IslandPath Analysis: Rhodopseudomonas palustris BisB5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.98   STD DEV: 3.46
Rhodopseudomonas palustris BisB5, complete genome - 1..4892717
4397 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
699	 69.63	+1	788186..789634	+	482	91975181	-	RPD_0701	-	PepSY-associated TM helix
700	 67.78	0	789647..791089	-	480	91975182	-	RPD_0702	-	TRAP transporter solute receptor TAXI family protein
701	 66.01	0	791260..791565	+	101	91975183	phhB	RPD_0703	-	pterin-4-alpha-carbinolamine dehydratase
702	 64.80	0	791652..792026	+	124	91975184	-	RPD_0704	-	hypothetical protein
703	 66.04	0	792049..792684	-	211	91975185	-	RPD_0705	-	regulatory protein, TetR
704	 67.50	0	792836..794989	+	717	91975186	-	RPD_0706	-	FAD dependent oxidoreductase
705	 65.85	0	795071..796045	-	324	91975187	-	RPD_0707	-	zinc-binding alcohol dehydrogenase
706	 68.57	+1	796333..796911	+	192	91975188	-	RPD_0708	-	hypothetical protein
707	 63.99	0	797170..798366	+	398	91975189	-	RPD_0709	-	hypothetical protein
708	 65.99	0	798371..798964	+	197	91975190	-	RPD_0710	-	metal-dependent phosphohydrolase
709	 67.44	0	798964..799482	+	172	91975191	-	RPD_0711	-	hypothetical protein
710	 67.95	0	799564..800340	+	258	91975192	-	RPD_0712	-	phosphoesterase, PA-phosphatase related
711	 63.38	0	800435..801772	+	445	91975193	-	RPD_0713	-	argininosuccinate synthase
712	 67.91	0	801988..803757	+	589	91975194	-	RPD_0714	-	alkaline phosphatase
713	 69.93	+1	803766..804347	-	193	91975195	-	RPD_0715	-	nuclease (SNase-like)
714	 68.47	+1	804487..804708	-	73	91975196	-	RPD_0716	-	hypothetical protein
715	 70.14	+1	804875..806227	+	450	91975197	-	RPD_0717	-	Fmu (Sun)
716	 67.36	0	806405..808291	+	628	91975198	-	RPD_0718	-	heparinase II/III-like
717	 67.11	0	808392..809984	+	530	91975199	purH	RPD_0719	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
718	 68.13	0	810141..811235	-	364	91975200	-	RPD_0720	-	phospho-2-dehydro-3-deoxyheptonate aldolase
719	 66.31	0	811448..812845	-	465	91975201	-	RPD_0721	-	major facilitator transporter
720	 67.73	0	812909..814693	+	594	91975202	-	RPD_0722	-	gamma-glutamyltransferase
721	 64.51	0	814812..815693	+	293	91975203	-	RPD_0723	-	short chain dehydrogenase
722	 65.17	0	815928..816596	-	222	91975204	-	RPD_0724	-	glutathione S-transferase-like
723	 65.18	0	816684..817019	-	111	91975205	-	RPD_0725	-	hypothetical protein
724	 71.73	+1	817134..817745	+	203	91975206	-	RPD_0726	-	hypothetical protein
725	 62.35	0	817829..818431	+	200	91975207	-	RPD_0727	-	DSBA oxidoreductase
726	 65.85	0	818574..819311	+	245	91975208	-	RPD_0728	-	short-chain dehydrogenase/reductase SDR
727	 68.19	0	819375..820295	+	306	91975209	-	RPD_0729	-	2-dehydropantoate 2-reductase
728	 63.33	0	820706..822352	+	548	91975210	-	RPD_0730	-	cytochrome c oxidase, cbb3-type, subunit I
729	 62.31	0	822364..823098	+	244	91975211	-	RPD_0731	-	cytochrome c oxidase, cbb3-type, subunit II
730	 55.76	-2	823108..823272	+	54	91975212	-	RPD_0732	-	Cbb3-type cytochrome oxidase component
731	 66.10	0	823280..824161	+	293	91975213	-	RPD_0733	-	cytochrome c oxidase, cbb3-type, subunit III
732	 63.65	0	824266..825723	+	485	91975214	-	RPD_0734	-	4Fe-4S ferredoxin, iron-sulfur binding
733	 64.87	0	825744..826244	+	166	91975215	-	RPD_0735	-	FixH
734	 68.03	0	826279..828474	+	731	91975216	-	RPD_0736	-	copper-translocating P-type ATPase
735	 69.05	+1	828474..828641	+	55	91975217	-	RPD_0737	-	cytochrome oxidase maturation protein, cbb3-type
736	 66.67	0	828657..828863	+	68	91975218	-	RPD_0738	-	hypothetical protein
737	 67.56	0	828989..829213	+	74	91975219	-	RPD_0739	-	hypothetical protein
738	 60.98	-1	829333..829842	+	169	91975220	-	RPD_0740	-	regulatory proteins, AsnC/Lrp
739	 63.53	0	830237..831925	+	562	91975221	-	RPD_0741	-	circadian clock protein KaiC
740	 60.22	-1	831935..832213	+	92	91975222	-	RPD_0742	-	KaiB
741	 66.80	0	832216..833667	+	483	91975223	-	RPD_0743	-	HWE histidine kinase
742	 65.31	0	834251..835432	+	393	91975224	-	RPD_0744	-	integrase catalytic subunit
743	 51.33	-2	835419..836774	+	451	91975225	-	RPD_0745	-	sugar transferase
744	 55.56	-2	836865..838133	+	422	91975226	-	RPD_0746	-	glycosyl transferase, group 1
745	 55.21	-2	838135..839007	+	290	91975227	-	RPD_0747	-	dTDP-4-dehydrorhamnose reductase
746	 55.29	-2	839030..840040	+	336	91975228	-	RPD_0748	-	polysaccharide biosynthesis protein CapD
747	 53.83	-2	840033..841154	+	373	91975229	-	RPD_0749	-	UDP-N-acetylglucosamine 2-epimerase
748	 53.80	-2	841434..842840	+	468	91975230	-	RPD_0750	-	polysaccharide biosynthesis protein
749	 56.11	-2	842837..843139	+	100	91975231	-	RPD_0751	-	hypothetical protein
750	 57.98	-2	843146..843790	+	214	91975232	-	RPD_0752	-	methyltransferase type 11
751	 56.94	-2	843795..844997	+	400	91975233	-	RPD_0753	-	glycosyl transferase family protein
752	 53.39	-2	845009..846439	+	476	91975234	-	RPD_0754	-	hypothetical protein
753	 57.68	-2	846436..847470	+	344	91975235	-	RPD_0755	-	glycosyl transferase, group 1
754	 55.63	-2	847530..848399	-	289	91975236	-	RPD_0756	-	methyltransferase type 11
755	 52.57	-2	848493..849173	+	226	91975237	-	RPD_0757	-	glycosyl transferase family protein
756	 55.16	-2	849170..849508	+	112	91975238	-	RPD_0758	-	hypothetical protein
757	 57.56	-2	849873..851354	-	493	91975239	-	RPD_0759	-	hypothetical protein
758	 63.54	0	851365..852099	-	244	91975240	-	RPD_0760	-	integrase catalytic subunit
759	 64.94	0	852742..853146	-	134	91975241	-	RPD_0761	-	hypothetical protein
760	 62.41	0	853465..853887	+	140	91975242	-	RPD_0762	-	hypothetical protein
761	 68.93	+1	854240..855832	-	530	91975243	-	RPD_0763	-	gamma-glutamyltransferase
762	 62.10	0	856152..858869	-	905	91975244	-	RPD_0764	-	GGDEF domain-containing protein
763	 63.68	0	859077..859478	-	133	91975245	-	RPD_0765	-	hypothetical protein
764	 61.03	-1	859924..860136	+	70	91975246	-	RPD_0766	-	hypothetical protein
765	 64.61	0	860137..861402	-	421	91975247	-	RPD_0767	-	acyl-CoA dehydrogenase-like
766	 66.95	0	861478..861825	-	115	91975248	-	RPD_0768	-	putative cytochrome c552 precursor
767	 62.87	0	861831..862304	-	157	91975249	-	RPD_0769	-	hypothetical protein
768	 63.01	0	862465..864297	-	610	91975250	-	RPD_0770	-	GGDEF domain-containing protein
769	 66.43	0	864476..865318	+	280	91975251	-	RPD_0771	-	short-chain dehydrogenase/reductase SDR
770	 66.59	0	865344..866723	-	459	91975252	-	RPD_0772	-	cytochrome P450
771	 67.88	0	866844..868241	-	465	91975253	-	RPD_0773	-	adenylyl cyclase class-3/4/guanylyl cyclase
772	 68.14	0	868288..869235	+	315	91975254	-	RPD_0774	-	heat shock protein HtpX
773	 68.01	0	869646..871058	+	470	91975255	-	RPD_0775	-	major facilitator transporter
774	 65.41	0	871259..872296	+	345	91975256	-	RPD_0776	-	inner-membrane translocator
775	 68.92	+1	872293..874065	+	590	91975257	-	RPD_0777	-	ABC transporter related
776	 66.80	0	874062..874787	+	241	91975258	-	RPD_0778	-	ABC transporter related
777	 65.28	0	874828..875979	+	383	91975259	-	RPD_0779	-	extracellular ligand-binding receptor
778	 68.18	0	876312..877499	-	395	91975260	-	RPD_0780	-	Serine--glyoxylate transaminase
779	 66.55	0	877563..878411	-	282	91975261	-	RPD_0781	-	hypothetical protein
780	 65.43	0	878431..879159	-	242	91975262	-	RPD_0782	-	nuclease (SNase-like)
781	 64.43	0	879319..881058	-	579	91975263	-	RPD_0783	-	hypothetical protein
782	 68.49	+1	881484..882359	+	291	91975264	-	RPD_0784	-	peptidase C14, caspase catalytic subunit p20
783	 63.90	0	882497..883255	-	252	91975265	-	RPD_0785	-	carbonate dehydratase
784	 65.40	0	883342..883974	-	210	91975266	-	RPD_0786	-	putative phage repressor
785	 68.41	0	884308..884652	+	114	91975267	-	RPD_0787	-	hypothetical protein
786	 68.77	+1	884649..885743	+	364	91975268	-	RPD_0788	-	dihydroorotate dehydrogenase 2
787	 63.67	0	885948..886682	-	244	91975269	-	RPD_0789	-	beta-lactamase-like
788	 64.40	0	886884..887588	-	234	91975270	-	RPD_0790	-	carbonic anhydrase
789	 67.70	0	887722..889077	-	451	91975271	-	RPD_0791	-	MATE efflux family protein
790	 66.67	0	889091..889393	-	100	91975272	-	RPD_0792	-	hypothetical protein
791	 67.41	0	889466..891358	-	630	91975273	-	RPD_0793	-	ATP-dependent DNA ligase
792	 69.43	+1	891355..892404	-	349	91975274	-	RPD_0794	-	putative mRNA 3-end processing factor
793	 66.08	0	892551..893915	-	454	91975275	-	RPD_0795	-	putative outer membrane protein
794	 61.92	0	894262..895482	+	406	91975276	-	RPD_0796	-	extracellular ligand-binding receptor
795	 67.48	0	895564..898278	+	904	91975277	-	RPD_0797	-	DEAD/DEAH box helicase-like
796	 69.31	+1	898317..899036	+	239	91975278	-	RPD_0798	-	metallophosphoesterase
797	 65.03	0	899116..899907	-	263	91975279	-	RPD_0799	-	hypothetical protein
798	 66.88	0	899907..900830	-	307	91975280	-	RPD_0800	-	hypothetical protein
64.98	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.