IslandPath Analysis: Rhodopseudomonas palustris BisB5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.98   STD DEV: 3.46
Rhodopseudomonas palustris BisB5, complete genome - 1..4892717
4397 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
642	 66.20	0	730592..730804	-	70	91975124	-	RPD_0644	-	hypothetical protein
643	 59.70	-1	730929..731258	+	109	91975125	-	RPD_0645	-	CutA1 divalent ion tolerance protein
644	 70.11	+1	731296..731760	-	154	91975126	-	RPD_0646	-	hypothetical protein
645	 62.05	0	731828..732022	-	64	91975127	-	RPD_0647	-	hypothetical protein
646	 71.81	+1	732250..733221	+	323	91975128	-	RPD_0648	-	hypothetical protein
647	 63.49	0	733338..733526	+	62	91975129	-	RPD_0649	-	hypothetical protein
648	 69.30	+1	733611..734483	-	290	91975130	-	RPD_0650	-	hypothetical protein
649	 64.12	0	734561..735268	-	235	91975131	-	RPD_0651	-	phosphoglycerate mutase
650	 70.79	+1	735384..737810	-	808	91975132	-	RPD_0652	-	hypothetical protein
651	 70.06	+1	737830..739389	-	519	91975133	-	RPD_0653	-	NADH/ubiquinone/plastoquinone (complex I)
652	 65.22	0	739498..740397	+	299	91975134	-	RPD_0654	-	regulatory protein, LysR
653	 66.67	0	740427..740645	-	72	91975135	-	RPD_0655	-	hypothetical protein
654	 66.11	0	740669..741208	-	179	91975136	-	RPD_0656	-	hypothetical protein
655	 64.96	0	741649..742233	+	194	91975137	-	RPD_0657	-	hypothetical protein
656	 66.46	0	742397..743344	-	315	91975138	-	RPD_0658	-	dihydrodipicolinate synthase
657	 65.54	0	743349..743792	-	147	91975139	-	RPD_0659	-	hypothetical protein
658	 64.16	0	743823..744101	-	92	91975140	-	RPD_0660	-	hypothetical protein
659	 57.20	-2	744381..744644	-	87	91975141	-	RPD_0661	-	hypothetical protein
660	 64.14	0	744806..746509	+	567	91975142	-	RPD_0662	-	potassium-transporting ATPase subunit A
661	 65.25	0	746532..748655	+	707	91975143	-	RPD_0663	-	potassium-transporting ATPase subunit B
662	 66.50	0	748667..749272	+	201	91975144	-	RPD_0664	-	potassium-transporting ATPase, C subunit
663	 65.86	0	749315..752038	+	907	91975145	-	RPD_0665	-	osmosensitive K+ channel His kinase sensor
664	 62.66	0	752035..752757	+	240	91975146	-	RPD_0666	-	response regulator receiver
665	 63.31	0	752792..753238	+	148	91975147	-	RPD_0667	-	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
666	 66.53	0	753652..754383	-	243	91975148	-	RPD_0668	-	hypothetical protein
667	 61.96	0	754399..754674	-	91	91975149	-	RPD_0669	-	hypothetical protein
668	 64.75	0	755121..756110	-	329	91975150	-	RPD_0670	-	hypothetical protein
669	 66.19	0	756225..756647	-	140	91975151	-	RPD_0671	-	putative monovalent cation/H+ antiporter subunit G
670	 61.11	-1	756655..756924	-	89	91975152	-	RPD_0672	-	putative monovalent cation/H+ antiporter subunit F
671	 61.76	0	756921..757409	-	162	91975153	-	RPD_0673	-	putative monovalent cation/H+ antiporter subunit E
672	 68.16	0	757406..758941	-	511	91975154	-	RPD_0674	-	putative monovalent cation/H+ antiporter subunit D
673	 65.05	0	758938..759309	-	123	91975155	-	RPD_0675	-	putative monovalent cation/H+ antiporter subunit C
674	 68.72	+1	759310..762186	-	958	91975156	-	RPD_0676	-	putative monovalent cation/H+ antiporter subunit A
675	 68.61	+1	762526..762936	-	136	91975157	-	RPD_0677	-	putative flagellar basal-body rod protein flgC
676	 65.26	0	763039..764598	-	519	91975158	-	RPD_0678	-	hypothetical protein
677	 68.30	0	764854..765771	-	305	91975159	-	RPD_0679	-	PepSY-associated TM helix
678	 58.80	-1	766076..766342	+	88	91975160	-	RPD_0680	-	hypothetical protein
679	 63.10	0	766525..766917	+	130	91975161	-	RPD_0681	-	hypothetical protein
680	 61.48	-1	766999..767403	+	134	91975162	-	RPD_0682	-	hypothetical protein
681	 58.19	-1	767746..768087	+	113	91975163	-	RPD_0683	-	hypothetical protein
682	 63.47	0	768258..768476	+	72	91975164	-	RPD_0684	-	hypothetical protein
683	 70.28	+1	768592..770280	-	562	91975165	-	RPD_0685	-	protein of unknown function DUF894, DitE
684	 69.75	+1	770389..771816	+	475	91975166	-	RPD_0686	-	twin-arginine translocation pathway signal
685	 68.83	+1	771892..773280	+	462	91975167	-	RPD_0687	-	cytochrome P450
686	 61.01	-1	773545..774021	+	158	91975168	-	RPD_0688	-	hypothetical protein
687	 65.51	0	774216..774995	+	259	91975169	-	RPD_0689	-	short-chain dehydrogenase/reductase SDR
688	 65.67	0	775218..775718	+	166	91975170	-	RPD_0690	-	hypothetical protein
689	 67.04	0	775790..776602	+	270	91975171	-	RPD_0691	-	enoyl-CoA hydratase
690	 57.73	-2	777078..777368	+	96	91975172	-	RPD_0692	-	protein of unknown function YGGT
691	 70.99	+1	777401..777724	+	107	91975173	-	RPD_0693	-	hypothetical protein
692	 67.12	0	777825..778712	+	295	91975174	-	RPD_0694	-	methenyltetrahydrofolate cyclohydrolase
693	 66.40	0	778880..780361	-	493	91975175	-	RPD_0695	-	hypothetical protein
694	 61.45	-1	780398..780934	-	178	91975176	-	RPD_0696	-	inorganic pyrophosphatase
695	 67.65	0	781009..781518	-	169	91975177	-	RPD_0697	-	GCN5-related N-acetyltransferase
696	 68.92	+1	781739..782983	-	414	91975178	-	RPD_0698	-	amine oxidase
697	 64.42	0	783101..784924	-	607	91975179	-	RPD_0699	-	GTP-binding protein TypA
698	 65.64	0	785853..788183	+	776	91975180	-	RPD_0700	-	TonB-dependent siderophore receptor
699	 69.63	+1	788186..789634	+	482	91975181	-	RPD_0701	-	PepSY-associated TM helix
700	 67.78	0	789647..791089	-	480	91975182	-	RPD_0702	-	TRAP transporter solute receptor TAXI family protein
701	 66.01	0	791260..791565	+	101	91975183	phhB	RPD_0703	-	pterin-4-alpha-carbinolamine dehydratase
702	 64.80	0	791652..792026	+	124	91975184	-	RPD_0704	-	hypothetical protein
703	 66.04	0	792049..792684	-	211	91975185	-	RPD_0705	-	regulatory protein, TetR
704	 67.50	0	792836..794989	+	717	91975186	-	RPD_0706	-	FAD dependent oxidoreductase
705	 65.85	0	795071..796045	-	324	91975187	-	RPD_0707	-	zinc-binding alcohol dehydrogenase
706	 68.57	+1	796333..796911	+	192	91975188	-	RPD_0708	-	hypothetical protein
707	 63.99	0	797170..798366	+	398	91975189	-	RPD_0709	-	hypothetical protein
708	 65.99	0	798371..798964	+	197	91975190	-	RPD_0710	-	metal-dependent phosphohydrolase
709	 67.44	0	798964..799482	+	172	91975191	-	RPD_0711	-	hypothetical protein
710	 67.95	0	799564..800340	+	258	91975192	-	RPD_0712	-	phosphoesterase, PA-phosphatase related
711	 63.38	0	800435..801772	+	445	91975193	-	RPD_0713	-	argininosuccinate synthase
712	 67.91	0	801988..803757	+	589	91975194	-	RPD_0714	-	alkaline phosphatase
713	 69.93	+1	803766..804347	-	193	91975195	-	RPD_0715	-	nuclease (SNase-like)
714	 68.47	+1	804487..804708	-	73	91975196	-	RPD_0716	-	hypothetical protein
715	 70.14	+1	804875..806227	+	450	91975197	-	RPD_0717	-	Fmu (Sun)
716	 67.36	0	806405..808291	+	628	91975198	-	RPD_0718	-	heparinase II/III-like
717	 67.11	0	808392..809984	+	530	91975199	purH	RPD_0719	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
718	 68.13	0	810141..811235	-	364	91975200	-	RPD_0720	-	phospho-2-dehydro-3-deoxyheptonate aldolase
719	 66.31	0	811448..812845	-	465	91975201	-	RPD_0721	-	major facilitator transporter
720	 67.73	0	812909..814693	+	594	91975202	-	RPD_0722	-	gamma-glutamyltransferase
721	 64.51	0	814812..815693	+	293	91975203	-	RPD_0723	-	short chain dehydrogenase
722	 65.17	0	815928..816596	-	222	91975204	-	RPD_0724	-	glutathione S-transferase-like
723	 65.18	0	816684..817019	-	111	91975205	-	RPD_0725	-	hypothetical protein
724	 71.73	+1	817134..817745	+	203	91975206	-	RPD_0726	-	hypothetical protein
725	 62.35	0	817829..818431	+	200	91975207	-	RPD_0727	-	DSBA oxidoreductase
726	 65.85	0	818574..819311	+	245	91975208	-	RPD_0728	-	short-chain dehydrogenase/reductase SDR
727	 68.19	0	819375..820295	+	306	91975209	-	RPD_0729	-	2-dehydropantoate 2-reductase
728	 63.33	0	820706..822352	+	548	91975210	-	RPD_0730	-	cytochrome c oxidase, cbb3-type, subunit I
729	 62.31	0	822364..823098	+	244	91975211	-	RPD_0731	-	cytochrome c oxidase, cbb3-type, subunit II
730	 55.76	-2	823108..823272	+	54	91975212	-	RPD_0732	-	Cbb3-type cytochrome oxidase component
731	 66.10	0	823280..824161	+	293	91975213	-	RPD_0733	-	cytochrome c oxidase, cbb3-type, subunit III
732	 63.65	0	824266..825723	+	485	91975214	-	RPD_0734	-	4Fe-4S ferredoxin, iron-sulfur binding
733	 64.87	0	825744..826244	+	166	91975215	-	RPD_0735	-	FixH
734	 68.03	0	826279..828474	+	731	91975216	-	RPD_0736	-	copper-translocating P-type ATPase
735	 69.05	+1	828474..828641	+	55	91975217	-	RPD_0737	-	cytochrome oxidase maturation protein, cbb3-type
736	 66.67	0	828657..828863	+	68	91975218	-	RPD_0738	-	hypothetical protein
737	 67.56	0	828989..829213	+	74	91975219	-	RPD_0739	-	hypothetical protein
738	 60.98	-1	829333..829842	+	169	91975220	-	RPD_0740	-	regulatory proteins, AsnC/Lrp
739	 63.53	0	830237..831925	+	562	91975221	-	RPD_0741	-	circadian clock protein KaiC
740	 60.22	-1	831935..832213	+	92	91975222	-	RPD_0742	-	KaiB
741	 66.80	0	832216..833667	+	483	91975223	-	RPD_0743	-	HWE histidine kinase
64.98	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.