IslandPath Analysis: Rhodopseudomonas palustris BisB5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.98   STD DEV: 3.46
Rhodopseudomonas palustris BisB5, complete genome - 1..4892717
4397 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
613	 63.61	0	695994..696941	-	315	91975095	-	RPD_0615	-	ATPase
614	 68.71	+1	696938..698014	-	358	91975096	-	RPD_0616	-	acyl-CoA dehydrogenase-like
615	 62.17	0	698230..700362	-	710	91975097	-	RPD_0617	-	catalase
616	 64.48	0	700581..701219	-	212	91975098	-	RPD_0618	-	cytochrome c, class I
617	 62.12	0	701286..702539	-	417	91975099	-	RPD_0619	-	putative L-sorbosone dehydrogenase
618	 65.09	0	702900..704549	-	549	91975100	-	RPD_0620	-	major facilitator transporter
619	 65.74	0	704612..704827	-	71	91975101	-	RPD_0621	-	putative NAD-dependent formate dehydrogenase delta subunit
620	 68.84	+1	704817..705644	-	275	91975102	-	RPD_0622	-	formate dehydrogenase accessory protein
621	 66.03	0	705647..708493	-	948	91975103	-	RPD_0623	-	formate dehydrogenase, alpha subunit
622	 67.89	0	708505..710061	-	518	91975104	-	RPD_0624	-	NADH dehydrogenase (quinone)
623	 69.85	+1	710058..710528	-	156	91975105	-	RPD_0625	-	formate dehydrogenase subunit gamma
624	 64.58	0	710645..711601	-	318	91975106	-	RPD_0626	-	LysR, substrate-binding
625	 65.77	0	711847..713070	-	407	91975107	-	RPD_0627	-	S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase
626	 66.95	0	713221..713928	+	235	91975108	-	RPD_0628	-	methyltransferase type 11
627	 64.34	0	714391..715464	+	357	91975109	-	RPD_0629	-	high-affinity nickel-transporter
628	 69.10	+1	715471..716496	+	341	91975110	-	RPD_0630	-	transport system permease protein
629	 69.73	+1	716493..717275	+	260	91975111	-	RPD_0631	-	ABC transporter related
630	 66.43	0	717279..718118	+	279	91975112	-	RPD_0632	-	periplasmic binding protein
631	 67.59	0	718120..719091	+	323	91975113	-	RPD_0633	-	cobalamin biosynthesis protein CobD
632	 68.75	+1	719064..720551	-	495	91975114	-	RPD_0634	-	cobyric acid synthase
633	 63.80	0	720805..721431	-	208	91975115	-	RPD_0635	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
634	 70.89	+1	721428..725171	-	1247	91975116	cobN	RPD_0636	-	cobaltochelatase
635	 70.63	+1	725307..726314	-	335	91975117	-	RPD_0637	-	cobalamin (vitamin B12) biosynthesis CobW
636	 70.04	+1	726318..726851	-	177	91975118	-	RPD_0638	-	cobalbumin biosynthesis enzyme
637	 71.09	+1	726848..727435	-	195	91975119	-	RPD_0639	-	hypothetical protein
638	 70.55	+1	727743..728798	+	351	91975120	-	RPD_0640	-	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
639	 69.52	+1	728795..729496	+	233	91975121	-	RPD_0641	-	Cob(II)yrinic acid a,c-diamide reductase
640	 66.67	0	729640..729906	+	88	91975122	-	RPD_0642	-	hypothetical protein
641	 70.33	+1	729952..730470	-	172	91975123	-	RPD_0643	-	hypothetical protein
642	 66.20	0	730592..730804	-	70	91975124	-	RPD_0644	-	hypothetical protein
643	 59.70	-1	730929..731258	+	109	91975125	-	RPD_0645	-	CutA1 divalent ion tolerance protein
644	 70.11	+1	731296..731760	-	154	91975126	-	RPD_0646	-	hypothetical protein
645	 62.05	0	731828..732022	-	64	91975127	-	RPD_0647	-	hypothetical protein
646	 71.81	+1	732250..733221	+	323	91975128	-	RPD_0648	-	hypothetical protein
647	 63.49	0	733338..733526	+	62	91975129	-	RPD_0649	-	hypothetical protein
648	 69.30	+1	733611..734483	-	290	91975130	-	RPD_0650	-	hypothetical protein
649	 64.12	0	734561..735268	-	235	91975131	-	RPD_0651	-	phosphoglycerate mutase
650	 70.79	+1	735384..737810	-	808	91975132	-	RPD_0652	-	hypothetical protein
651	 70.06	+1	737830..739389	-	519	91975133	-	RPD_0653	-	NADH/ubiquinone/plastoquinone (complex I)
652	 65.22	0	739498..740397	+	299	91975134	-	RPD_0654	-	regulatory protein, LysR
653	 66.67	0	740427..740645	-	72	91975135	-	RPD_0655	-	hypothetical protein
654	 66.11	0	740669..741208	-	179	91975136	-	RPD_0656	-	hypothetical protein
655	 64.96	0	741649..742233	+	194	91975137	-	RPD_0657	-	hypothetical protein
656	 66.46	0	742397..743344	-	315	91975138	-	RPD_0658	-	dihydrodipicolinate synthase
657	 65.54	0	743349..743792	-	147	91975139	-	RPD_0659	-	hypothetical protein
658	 64.16	0	743823..744101	-	92	91975140	-	RPD_0660	-	hypothetical protein
659	 57.20	-2	744381..744644	-	87	91975141	-	RPD_0661	-	hypothetical protein
660	 64.14	0	744806..746509	+	567	91975142	-	RPD_0662	-	potassium-transporting ATPase subunit A
661	 65.25	0	746532..748655	+	707	91975143	-	RPD_0663	-	potassium-transporting ATPase subunit B
662	 66.50	0	748667..749272	+	201	91975144	-	RPD_0664	-	potassium-transporting ATPase, C subunit
663	 65.86	0	749315..752038	+	907	91975145	-	RPD_0665	-	osmosensitive K+ channel His kinase sensor
664	 62.66	0	752035..752757	+	240	91975146	-	RPD_0666	-	response regulator receiver
665	 63.31	0	752792..753238	+	148	91975147	-	RPD_0667	-	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
666	 66.53	0	753652..754383	-	243	91975148	-	RPD_0668	-	hypothetical protein
667	 61.96	0	754399..754674	-	91	91975149	-	RPD_0669	-	hypothetical protein
668	 64.75	0	755121..756110	-	329	91975150	-	RPD_0670	-	hypothetical protein
669	 66.19	0	756225..756647	-	140	91975151	-	RPD_0671	-	putative monovalent cation/H+ antiporter subunit G
670	 61.11	-1	756655..756924	-	89	91975152	-	RPD_0672	-	putative monovalent cation/H+ antiporter subunit F
671	 61.76	0	756921..757409	-	162	91975153	-	RPD_0673	-	putative monovalent cation/H+ antiporter subunit E
672	 68.16	0	757406..758941	-	511	91975154	-	RPD_0674	-	putative monovalent cation/H+ antiporter subunit D
673	 65.05	0	758938..759309	-	123	91975155	-	RPD_0675	-	putative monovalent cation/H+ antiporter subunit C
674	 68.72	+1	759310..762186	-	958	91975156	-	RPD_0676	-	putative monovalent cation/H+ antiporter subunit A
675	 68.61	+1	762526..762936	-	136	91975157	-	RPD_0677	-	putative flagellar basal-body rod protein flgC
676	 65.26	0	763039..764598	-	519	91975158	-	RPD_0678	-	hypothetical protein
677	 68.30	0	764854..765771	-	305	91975159	-	RPD_0679	-	PepSY-associated TM helix
678	 58.80	-1	766076..766342	+	88	91975160	-	RPD_0680	-	hypothetical protein
679	 63.10	0	766525..766917	+	130	91975161	-	RPD_0681	-	hypothetical protein
680	 61.48	-1	766999..767403	+	134	91975162	-	RPD_0682	-	hypothetical protein
681	 58.19	-1	767746..768087	+	113	91975163	-	RPD_0683	-	hypothetical protein
682	 63.47	0	768258..768476	+	72	91975164	-	RPD_0684	-	hypothetical protein
683	 70.28	+1	768592..770280	-	562	91975165	-	RPD_0685	-	protein of unknown function DUF894, DitE
684	 69.75	+1	770389..771816	+	475	91975166	-	RPD_0686	-	twin-arginine translocation pathway signal
685	 68.83	+1	771892..773280	+	462	91975167	-	RPD_0687	-	cytochrome P450
686	 61.01	-1	773545..774021	+	158	91975168	-	RPD_0688	-	hypothetical protein
687	 65.51	0	774216..774995	+	259	91975169	-	RPD_0689	-	short-chain dehydrogenase/reductase SDR
688	 65.67	0	775218..775718	+	166	91975170	-	RPD_0690	-	hypothetical protein
689	 67.04	0	775790..776602	+	270	91975171	-	RPD_0691	-	enoyl-CoA hydratase
690	 57.73	-2	777078..777368	+	96	91975172	-	RPD_0692	-	protein of unknown function YGGT
691	 70.99	+1	777401..777724	+	107	91975173	-	RPD_0693	-	hypothetical protein
692	 67.12	0	777825..778712	+	295	91975174	-	RPD_0694	-	methenyltetrahydrofolate cyclohydrolase
693	 66.40	0	778880..780361	-	493	91975175	-	RPD_0695	-	hypothetical protein
694	 61.45	-1	780398..780934	-	178	91975176	-	RPD_0696	-	inorganic pyrophosphatase
695	 67.65	0	781009..781518	-	169	91975177	-	RPD_0697	-	GCN5-related N-acetyltransferase
696	 68.92	+1	781739..782983	-	414	91975178	-	RPD_0698	-	amine oxidase
697	 64.42	0	783101..784924	-	607	91975179	-	RPD_0699	-	GTP-binding protein TypA
698	 65.64	0	785853..788183	+	776	91975180	-	RPD_0700	-	TonB-dependent siderophore receptor
699	 69.63	+1	788186..789634	+	482	91975181	-	RPD_0701	-	PepSY-associated TM helix
700	 67.78	0	789647..791089	-	480	91975182	-	RPD_0702	-	TRAP transporter solute receptor TAXI family protein
701	 66.01	0	791260..791565	+	101	91975183	phhB	RPD_0703	-	pterin-4-alpha-carbinolamine dehydratase
702	 64.80	0	791652..792026	+	124	91975184	-	RPD_0704	-	hypothetical protein
703	 66.04	0	792049..792684	-	211	91975185	-	RPD_0705	-	regulatory protein, TetR
704	 67.50	0	792836..794989	+	717	91975186	-	RPD_0706	-	FAD dependent oxidoreductase
705	 65.85	0	795071..796045	-	324	91975187	-	RPD_0707	-	zinc-binding alcohol dehydrogenase
706	 68.57	+1	796333..796911	+	192	91975188	-	RPD_0708	-	hypothetical protein
707	 63.99	0	797170..798366	+	398	91975189	-	RPD_0709	-	hypothetical protein
708	 65.99	0	798371..798964	+	197	91975190	-	RPD_0710	-	metal-dependent phosphohydrolase
709	 67.44	0	798964..799482	+	172	91975191	-	RPD_0711	-	hypothetical protein
710	 67.95	0	799564..800340	+	258	91975192	-	RPD_0712	-	phosphoesterase, PA-phosphatase related
711	 63.38	0	800435..801772	+	445	91975193	-	RPD_0713	-	argininosuccinate synthase
712	 67.91	0	801988..803757	+	589	91975194	-	RPD_0714	-	alkaline phosphatase
64.98	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.