version 1.0
Rhodopseudomonas palustris BisB5, complete genome - 1..4892717 4397 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3525 69.23 +1 3936319..3936708 + 129 91978007 - RPD_3542 - hypothetical protein 3526 60.61 -1 3937190..3937783 - 197 91978008 - RPD_3543 - GCN5-related N-acetyltransferase 3527 67.33 0 3937805..3939307 - 500 91978009 - RPD_3544 - glycerol kinase 3528 59.35 -1 3939652..3940362 - 236 91978010 - RPD_3545 - regulatory protein, LuxR 3529 56.98 -2 3940531..3941583 - 350 91978011 - RPD_3546 - hypothetical protein 3530 59.55 -1 3942075..3943775 + 566 91978012 - RPD_3547 - chemotaxis sensory transducer 3531 66.80 0 3943975..3944748 - 257 91978013 - RPD_3548 - short-chain dehydrogenase/reductase SDR 3532 65.79 0 3944928..3946070 - 380 91978014 - RPD_3549 - acyl-CoA dehydrogenase-like 3533 62.80 0 3946263..3947453 - 396 91978015 - RPD_3550 - acyl-CoA dehydrogenase-like 3534 67.93 0 3947606..3948793 - 395 91978016 - RPD_3551 - Acetyl-CoA C-acyltransferase 3535 66.00 0 3948818..3950470 - 550 91978017 - RPD_3552 - AMP-dependent synthetase and ligase 3536 67.14 0 3950655..3952754 - 699 91978018 - RPD_3553 - 3-hydroxyacyl-CoA dehydrogenase, NAD-binding 3537 61.43 -1 3952896..3953774 + 292 91978019 - RPD_3554 - IclR family transcriptional regulator 3538 63.28 0 3953838..3954635 + 265 91978020 - RPD_3555 - ABC transporter related 3539 65.83 0 3954632..3955345 + 237 91978021 - RPD_3556 - ABC transporter related 3540 64.16 0 3955357..3956235 + 292 91978022 - RPD_3557 - inner-membrane translocator 3541 64.59 0 3956238..3957248 + 336 91978023 - RPD_3558 - inner-membrane translocator 3542 64.52 0 3957460..3958716 + 418 91978024 - RPD_3559 - extracellular ligand-binding receptor 3543 61.41 -1 3958898..3960133 + 411 91978025 - RPD_3560 - extracellular ligand-binding receptor 3544 59.43 -1 3960396..3961625 + 409 91978026 - RPD_3561 - extracellular ligand-binding receptor 3545 61.54 0 3961790..3963019 + 409 91978027 - RPD_3562 - putative leucine/isoleucine/valine-binding protein precursor 3546 61.88 0 3963140..3963640 - 166 91978028 - RPD_3563 - hypothetical protein 3547 66.80 0 3963828..3966002 + 724 91978029 - RPD_3564 - carbohydrate-selective porin OprB 3548 67.77 0 3966081..3967253 - 390 91978030 - RPD_3565 - peptidase M20D, amidohydrolase 3549 68.52 +1 3967408..3969027 + 539 91978031 - RPD_3566 - glucose-methanol-choline oxidoreductase 3550 64.91 0 3969220..3970074 - 284 91978032 - RPD_3567 - hypothetical protein 3551 64.87 0 3970217..3971608 - 463 91978033 - RPD_3568 - aminotransferase class-III 3552 64.86 0 3972036..3974642 - 868 91978034 - RPD_3569 - hypothetical protein 3553 63.28 0 3974943..3975887 + 314 91978035 ispH RPD_3570 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3554 62.70 0 3975928..3977088 + 386 91978036 - RPD_3571 - radical SAM family protein 3555 67.48 0 3977017..3977757 - 246 91978037 - RPD_3572 - hypothetical protein 3556 65.19 0 3977754..3979718 - 654 91978038 - RPD_3573 - squalene cyclase 3557 69.13 +1 3979758..3981014 - 418 91978039 - RPD_3574 - amine oxidase 3558 67.26 0 3981014..3981853 - 279 91978040 - RPD_3575 - squalene/phytoene synthase 3559 65.98 0 3981850..3982728 - 292 91978041 - RPD_3576 - squalene/phytoene synthase 3560 62.96 0 3982981..3983223 - 80 91978042 - RPD_3577 - hypothetical protein 3561 65.26 0 3983641..3984138 + 165 91978043 - RPD_3578 - hypothetical protein 3562 65.91 0 3984365..3986731 - 788 91978044 - RPD_3579 - RND superfamily transporter 3563 62.31 0 3987142..3988725 - 527 91978045 - RPD_3580 - radical SAM family protein 3564 66.31 0 3989044..3990747 - 567 91978046 - RPD_3581 - methyl-accepting chemotaxis sensory transducer 3565 60.31 -1 3990812..3991267 - 151 91978047 - RPD_3582 - Cache, type 2 3566 66.89 0 3991491..3992369 - 292 91978048 - RPD_3583 - transglutaminase-like 3567 70.38 +1 3992366..3994867 - 833 91978049 - RPD_3584 - hypothetical protein 3568 66.55 0 3994892..3998278 - 1128 91978050 - RPD_3585 - transglutaminase-like 3569 63.42 0 3998440..3999270 - 276 91978051 - RPD_3586 - HpcH/HpaI aldolase 3570 68.85 +1 3999364..4000464 - 366 91978052 - RPD_3587 - malate/L-lactate dehydrogenase 3571 64.65 0 4000578..4001072 - 164 91978053 - RPD_3588 - homoprotocatechuate degradation transcriptional regulator HpaR 3572 66.29 0 4001289..4002095 + 268 91978054 - RPD_3589 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 3573 65.66 0 4002115..4002513 + 132 91978055 - RPD_3590 - 5-carboxymethyl-2-hydroxymuconate isomerase 3574 67.82 0 4002506..4004062 + 518 91978056 - RPD_3591 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 3575 64.93 0 4004229..4005206 + 325 91978057 - RPD_3592 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD 3576 67.35 0 4005364..4006239 + 291 91978058 - RPD_3593 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 3577 69.43 +1 4006270..4007895 + 541 91978059 - RPD_3594 - hypothetical protein 3578 69.57 +1 4007919..4008572 - 217 91978060 - RPD_3595 - 2OG-Fe(II) oxygenase 3579 67.89 0 4008926..4009252 + 108 91978061 - RPD_3596 - hypothetical protein 3580 66.91 0 4009266..4009676 - 136 91978062 - RPD_3597 - hypothetical protein 3581 65.12 0 4009907..4010293 + 128 91978063 - RPD_3598 - hypothetical protein 3582 60.49 -1 4010376..4010780 - 134 91978064 - RPD_3599 - hypothetical protein 3583 69.20 +1 4011106..4011972 - 288 91978065 - RPD_3600 - hypothetical protein 3584 62.67 0 4012014..4012688 - 224 91978066 - RPD_3601 - cyclic nucleotide-binding 3585 69.73 +1 4013020..4013802 + 260 91978067 - RPD_3602 - enoyl-CoA hydratase/isomerase 3586 68.24 0 4013828..4014526 - 232 91978068 - RPD_3603 - nitroreductase 3587 65.38 0 4014693..4015937 - 414 91978069 - RPD_3604 - acyl-CoA dehydrogenase-like 3588 66.03 0 4016118..4017365 - 415 91978070 - RPD_3605 - acyl-CoA dehydrogenase-like 3589 67.46 0 4017376..4018503 - 375 91978071 - RPD_3606 - acyl-CoA dehydrogenase-like 3590 66.93 0 4018649..4020523 - 624 91978072 - RPD_3607 - acyl-CoA synthetase 3591 66.17 0 4020582..4021388 - 268 91978073 - RPD_3608 - enoyl-CoA hydratase/isomerase 3592 67.85 0 4021580..4022338 - 252 91978074 - RPD_3609 - short-chain dehydrogenase/reductase SDR 3593 61.74 0 4022820..4023509 - 229 91978075 - RPD_3610 - TetR family transcriptional regulator 3594 66.84 0 4023640..4024815 + 391 91978076 - RPD_3611 - acetyl-CoA acetyltransferase 3595 64.72 0 4024975..4026519 + 514 91978077 - RPD_3612 - acyl-CoA synthetase 3596 69.62 +1 4026680..4027594 + 304 91978078 - RPD_3613 - hypothetical protein 3597 64.97 0 4027823..4028530 - 235 91978079 - RPD_3614 - putative outer membrane protein 3598 65.16 0 4028661..4030319 - 552 91978080 - RPD_3615 - hypothetical protein 3599 62.15 0 4030424..4030711 - 95 91978081 - RPD_3616 - twin-arginine translocation pathway signal 3600 67.86 0 4031300..4033315 - 671 91978082 - RPD_3617 - autotransporter beta-domain-containing protein 3601 65.43 0 4033900..4035756 - 618 91978083 - RPD_3618 - acyl-CoA dehydrogenase-like 3602 67.48 0 4035844..4036332 + 162 91978084 - RPD_3619 - CinA-like 3603 64.27 0 4036339..4036713 - 124 91978085 - RPD_3620 - crcB protein 3604 58.63 -1 4036876..4037472 - 198 91978086 - RPD_3621 - superoxide dismutase 3605 65.70 0 4037649..4038884 - 411 91978087 - RPD_3622 - major facilitator transporter 3606 69.36 +1 4039143..4040516 + 457 91978088 - RPD_3623 - MATE efflux family protein 3607 66.67 0 4040638..4041081 + 147 91978089 - RPD_3624 - hypothetical protein 3608 67.36 0 4041207..4042358 - 383 91978090 - RPD_3625 - hypothetical protein 3609 61.81 0 4042436..4042579 - 47 91978091 - RPD_3626 - hypothetical protein 3610 63.81 0 4042795..4044018 + 407 91978092 - RPD_3627 - metallophosphoesterase 3611 68.72 +1 4044015..4047470 + 1151 91978093 - RPD_3628 - hypothetical protein 3612 62.52 0 4048610..4049380 + 256 91978094 - RPD_3629 - hypothetical protein 3613 61.47 -1 4049364..4052885 + 1173 91978095 - RPD_3630 - DEAD/DEAH box helicase-like 3614 61.55 0 4052958..4054481 - 507 91978096 - RPD_3631 - hypothetical protein 3615 61.62 0 4054478..4055923 - 481 91978097 - RPD_3632 - hypothetical protein 3616 64.46 0 4056261..4056668 + 135 91978098 - RPD_3633 - hypothetical protein 3617 63.33 0 4056712..4057161 + 149 91978099 - RPD_3634 - hypothetical protein 3618 63.64 0 4057164..4057889 + 241 91978100 - RPD_3635 - hypothetical protein 3619 63.56 0 4058037..4059227 + 396 91978101 - RPD_3636 - DNA polymerase IV 3620 64.21 0 4059446..4061440 - 664 91978102 - RPD_3637 - iron permease FTR1 3621 63.40 0 4061600..4062580 - 326 91978103 - RPD_3638 - bile acid:sodium symporter 3622 57.00 -2 4062666..4063058 + 130 91978104 - RPD_3639 - regulatory protein, ArsR 3623 60.64 -1 4063165..4063413 - 82 91978105 - RPD_3640 - putative silver efflux pump-like 3624 62.86 0 4063410..4063724 - 104 91978106 - RPD_3641 - putative silver efflux pump-like 64.98 MEAN 3.46 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0