version 1.0
Rhodopseudomonas palustris BisB5, complete genome - 1..4892717 4397 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3487 65.68 0 3893215..3893517 - 100 91977969 ureA RPD_3504 - urease subunit gamma 3488 68.66 +1 3893583..3894434 - 283 91977970 - RPD_3505 - urease accessory protein UreD 3489 65.37 0 3894471..3895166 - 231 91977971 - RPD_3506 - ABC transporter related 3490 61.96 0 3895360..3896124 - 254 91977972 - RPD_3507 - ABC transporter related 3491 64.24 0 3896121..3897314 - 397 91977973 - RPD_3508 - inner-membrane translocator 3492 67.40 0 3897676..3899304 - 542 91977974 - RPD_3509 - inner-membrane translocator 3493 61.00 -1 3899447..3900769 - 440 91977975 - RPD_3510 - twin-arginine translocation pathway signal 3494 68.25 0 3901271..3902719 + 482 91977976 - RPD_3511 - DEAD/DEAH box helicase-like 3495 63.51 0 3902743..3903027 + 94 91977977 - RPD_3512 - translation initiation factor IF-1 3496 62.91 0 3903311..3903523 + 70 91977978 - RPD_3513 - cold-shock DNA-binding domain protein 3497 59.17 -1 3903663..3904289 - 208 91977979 - RPD_3514 - TadE-like 3498 60.44 -1 3904298..3904843 - 181 91977980 - RPD_3515 - TadE-like 3499 62.76 0 3905035..3905520 - 161 91977981 - RPD_3516 - hypothetical protein 3500 62.45 0 3905825..3906061 + 78 91977982 - RPD_3517 - Flp/Fap pilin component 3501 65.52 0 3906390..3906914 + 174 91977983 - RPD_3518 - peptidase A24A, prepilin type IV 3502 65.79 0 3907039..3907839 + 266 91977984 - RPD_3519 - Flp pilus assembly CpaB 3503 65.42 0 3907853..3909295 + 480 91977985 - RPD_3520 - type II and III secretion system protein 3504 67.90 0 3909315..3910046 + 243 91977986 - RPD_3521 - Type IV pili component-like 3505 65.49 0 3910043..3911320 + 425 91977987 - RPD_3522 - putative pilus assembly protein cpaE 3506 65.36 0 3911342..3912790 + 482 91977988 - RPD_3523 - type II secretion system protein E 3507 64.31 0 3912805..3913779 + 324 91977989 - RPD_3524 - type II secretion system protein 3508 63.18 0 3913791..3914765 + 324 91977990 - RPD_3525 - type II secretion system protein 3509 67.38 0 3914862..3915707 - 281 91977991 - RPD_3526 - tetratricopeptide TPR_2 3510 68.77 +1 3915781..3917160 + 459 91977992 - RPD_3527 - leucyl aminopeptidase 3511 68.78 +1 3917153..3918004 + 283 91977993 - RPD_3528 - NLP/P60 3512 67.61 0 3917988..3918626 - 212 91977994 - RPD_3529 - nucleoside diphosphate pyrophosphatase 3513 65.45 0 3918634..3920271 - 545 91977995 - RPD_3530 - ABC transporter related 3514 50.51 -2 3920271..3920759 - 162 91977996 - RPD_3531 - PilT protein-like 3515 62.85 0 3921007..3922185 - 392 91977997 - RPD_3532 - binding-protein-dependent transport systems inner membrane component 3516 61.62 0 3922185..3923294 - 369 91977998 - RPD_3533 - binding-protein-dependent transport systems inner membrane component 3517 66.03 0 3923295..3925175 - 626 91977999 - RPD_3534 - extracellular solute-binding protein 3518 64.72 0 3925190..3927085 - 631 91978000 - RPD_3535 - twin-arginine translocation pathway signal 3519 63.77 0 3927299..3927850 - 183 91978001 - RPD_3536 - cytochrome c, class I 3520 68.29 0 3928064..3928801 + 245 91978002 - RPD_3537 - 3-deoxy-manno-octulosonate cytidylyltransferase 3521 64.56 0 3928871..3929725 + 284 91978003 - RPD_3538 - prephenate dehydratase 3522 68.14 0 3929938..3930954 - 338 91978004 - RPD_3539 - luciferase-like 3523 66.44 0 3931375..3932262 + 295 91978005 - RPD_3540 - 5,10-methylenetetrahydrofolate reductase 3524 66.56 0 3932267..3936148 + 1293 91978006 metH RPD_3541 - B12-dependent methionine synthase 3525 69.23 +1 3936319..3936708 + 129 91978007 - RPD_3542 - hypothetical protein 3526 60.61 -1 3937190..3937783 - 197 91978008 - RPD_3543 - GCN5-related N-acetyltransferase 3527 67.33 0 3937805..3939307 - 500 91978009 - RPD_3544 - glycerol kinase 3528 59.35 -1 3939652..3940362 - 236 91978010 - RPD_3545 - regulatory protein, LuxR 3529 56.98 -2 3940531..3941583 - 350 91978011 - RPD_3546 - hypothetical protein 3530 59.55 -1 3942075..3943775 + 566 91978012 - RPD_3547 - chemotaxis sensory transducer 3531 66.80 0 3943975..3944748 - 257 91978013 - RPD_3548 - short-chain dehydrogenase/reductase SDR 3532 65.79 0 3944928..3946070 - 380 91978014 - RPD_3549 - acyl-CoA dehydrogenase-like 3533 62.80 0 3946263..3947453 - 396 91978015 - RPD_3550 - acyl-CoA dehydrogenase-like 3534 67.93 0 3947606..3948793 - 395 91978016 - RPD_3551 - Acetyl-CoA C-acyltransferase 3535 66.00 0 3948818..3950470 - 550 91978017 - RPD_3552 - AMP-dependent synthetase and ligase 3536 67.14 0 3950655..3952754 - 699 91978018 - RPD_3553 - 3-hydroxyacyl-CoA dehydrogenase, NAD-binding 3537 61.43 -1 3952896..3953774 + 292 91978019 - RPD_3554 - IclR family transcriptional regulator 3538 63.28 0 3953838..3954635 + 265 91978020 - RPD_3555 - ABC transporter related 3539 65.83 0 3954632..3955345 + 237 91978021 - RPD_3556 - ABC transporter related 3540 64.16 0 3955357..3956235 + 292 91978022 - RPD_3557 - inner-membrane translocator 3541 64.59 0 3956238..3957248 + 336 91978023 - RPD_3558 - inner-membrane translocator 3542 64.52 0 3957460..3958716 + 418 91978024 - RPD_3559 - extracellular ligand-binding receptor 3543 61.41 -1 3958898..3960133 + 411 91978025 - RPD_3560 - extracellular ligand-binding receptor 3544 59.43 -1 3960396..3961625 + 409 91978026 - RPD_3561 - extracellular ligand-binding receptor 3545 61.54 0 3961790..3963019 + 409 91978027 - RPD_3562 - putative leucine/isoleucine/valine-binding protein precursor 3546 61.88 0 3963140..3963640 - 166 91978028 - RPD_3563 - hypothetical protein 3547 66.80 0 3963828..3966002 + 724 91978029 - RPD_3564 - carbohydrate-selective porin OprB 3548 67.77 0 3966081..3967253 - 390 91978030 - RPD_3565 - peptidase M20D, amidohydrolase 3549 68.52 +1 3967408..3969027 + 539 91978031 - RPD_3566 - glucose-methanol-choline oxidoreductase 3550 64.91 0 3969220..3970074 - 284 91978032 - RPD_3567 - hypothetical protein 3551 64.87 0 3970217..3971608 - 463 91978033 - RPD_3568 - aminotransferase class-III 3552 64.86 0 3972036..3974642 - 868 91978034 - RPD_3569 - hypothetical protein 3553 63.28 0 3974943..3975887 + 314 91978035 ispH RPD_3570 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3554 62.70 0 3975928..3977088 + 386 91978036 - RPD_3571 - radical SAM family protein 3555 67.48 0 3977017..3977757 - 246 91978037 - RPD_3572 - hypothetical protein 3556 65.19 0 3977754..3979718 - 654 91978038 - RPD_3573 - squalene cyclase 3557 69.13 +1 3979758..3981014 - 418 91978039 - RPD_3574 - amine oxidase 3558 67.26 0 3981014..3981853 - 279 91978040 - RPD_3575 - squalene/phytoene synthase 3559 65.98 0 3981850..3982728 - 292 91978041 - RPD_3576 - squalene/phytoene synthase 3560 62.96 0 3982981..3983223 - 80 91978042 - RPD_3577 - hypothetical protein 3561 65.26 0 3983641..3984138 + 165 91978043 - RPD_3578 - hypothetical protein 3562 65.91 0 3984365..3986731 - 788 91978044 - RPD_3579 - RND superfamily transporter 3563 62.31 0 3987142..3988725 - 527 91978045 - RPD_3580 - radical SAM family protein 3564 66.31 0 3989044..3990747 - 567 91978046 - RPD_3581 - methyl-accepting chemotaxis sensory transducer 3565 60.31 -1 3990812..3991267 - 151 91978047 - RPD_3582 - Cache, type 2 3566 66.89 0 3991491..3992369 - 292 91978048 - RPD_3583 - transglutaminase-like 3567 70.38 +1 3992366..3994867 - 833 91978049 - RPD_3584 - hypothetical protein 3568 66.55 0 3994892..3998278 - 1128 91978050 - RPD_3585 - transglutaminase-like 3569 63.42 0 3998440..3999270 - 276 91978051 - RPD_3586 - HpcH/HpaI aldolase 3570 68.85 +1 3999364..4000464 - 366 91978052 - RPD_3587 - malate/L-lactate dehydrogenase 3571 64.65 0 4000578..4001072 - 164 91978053 - RPD_3588 - homoprotocatechuate degradation transcriptional regulator HpaR 3572 66.29 0 4001289..4002095 + 268 91978054 - RPD_3589 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 3573 65.66 0 4002115..4002513 + 132 91978055 - RPD_3590 - 5-carboxymethyl-2-hydroxymuconate isomerase 3574 67.82 0 4002506..4004062 + 518 91978056 - RPD_3591 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 3575 64.93 0 4004229..4005206 + 325 91978057 - RPD_3592 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD 3576 67.35 0 4005364..4006239 + 291 91978058 - RPD_3593 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 3577 69.43 +1 4006270..4007895 + 541 91978059 - RPD_3594 - hypothetical protein 3578 69.57 +1 4007919..4008572 - 217 91978060 - RPD_3595 - 2OG-Fe(II) oxygenase 3579 67.89 0 4008926..4009252 + 108 91978061 - RPD_3596 - hypothetical protein 3580 66.91 0 4009266..4009676 - 136 91978062 - RPD_3597 - hypothetical protein 3581 65.12 0 4009907..4010293 + 128 91978063 - RPD_3598 - hypothetical protein 3582 60.49 -1 4010376..4010780 - 134 91978064 - RPD_3599 - hypothetical protein 3583 69.20 +1 4011106..4011972 - 288 91978065 - RPD_3600 - hypothetical protein 3584 62.67 0 4012014..4012688 - 224 91978066 - RPD_3601 - cyclic nucleotide-binding 3585 69.73 +1 4013020..4013802 + 260 91978067 - RPD_3602 - enoyl-CoA hydratase/isomerase 3586 68.24 0 4013828..4014526 - 232 91978068 - RPD_3603 - nitroreductase 64.98 MEAN 3.46 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0