version 1.0
Rhodopseudomonas palustris BisB5, complete genome - 1..4892717 4397 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 226 62.87 0 260510..262195 - 561 91974708 - RPD_0226 - methyl-accepting chemotaxis protein 227 65.42 0 262822..264990 - 722 91974709 - RPD_0227 - polynucleotide phosphorylase/polyadenylase 228 58.52 -1 265334..265603 - 89 91974710 rpsO RPD_0228 - 30S ribosomal protein S15 229 67.30 0 265606..266712 - 368 91974711 truB RPD_0229 - tRNA pseudouridine synthase B 230 65.69 0 266712..267122 - 136 91974712 rbfA RPD_0230 - ribosome-binding factor A 231 68.59 +1 267294..269945 - 883 91974713 infB RPD_0231 - translation initiation factor IF-2 232 64.28 0 269938..270732 - 264 91974714 - RPD_0232 - hypothetical protein 233 65.74 0 270895..272517 - 540 91974715 nusA RPD_0233 - transcription elongation factor NusA 234 68.19 0 272520..273308 - 262 91974716 - RPD_0234 - hypothetical protein 235 68.97 +1 273587..274672 + 361 91974717 - RPD_0235 - hypothetical protein 236 61.48 -1 274805..275575 - 256 91974718 trmB RPD_0236 - tRNA (guanine-N(7))-methyltransferase 237 60.71 -1 275694..276113 - 139 91974719 - RPD_0237 - XRE family transcriptional regulator 238 64.87 0 276304..277914 - 536 91974720 lnt RPD_0238 - apolipoprotein N-acyltransferase 239 66.93 0 277926..279053 - 375 91974721 - RPD_0239 - HlyC/CorC family transporters 240 64.97 0 279055..279642 - 195 91974722 - RPD_0240 - hypothetical protein 241 67.61 0 279642..280697 - 351 91974723 - RPD_0241 - PhoH-like protein 242 66.60 0 280703..282124 - 473 91974724 - RPD_0242 - tRNA-i(6)A37 modification enzyme MiaB 243 65.60 0 282222..282875 - 217 91974725 - RPD_0243 - HAD family hydrolase 244 60.19 -1 282970..283401 - 143 91974726 - RPD_0244 - ferric-uptake regulator 245 62.55 0 283463..283948 - 161 91974727 - RPD_0245 - ribosomal-protein-alanine acetyltransferase 246 71.55 +1 283959..284654 - 231 91974728 - RPD_0246 - peptidase M22, glycoprotease 247 64.73 0 284798..285364 - 188 91974729 - RPD_0247 - nitrogen-fixing NifU-like 248 68.89 +1 285516..286010 - 164 91974730 - RPD_0248 - hypothetical protein 249 64.09 0 286169..287215 - 348 162138292 - RPD_0249 - tryptophanyl-tRNA synthetase 250 71.48 +1 287292..288848 - 518 91974732 - RPD_0250 - integral membrane protein MviN 251 66.87 0 289114..290115 + 333 91974733 - RPD_0251 - PfkB 252 65.25 0 290262..291956 - 564 91974734 - RPD_0252 - acyl-CoA synthetase 253 63.30 0 292089..293276 - 395 91974735 - RPD_0253 - beta-lactamase 254 71.56 +1 293543..293869 + 108 91974736 - RPD_0254 - hypothetical protein 255 66.33 0 294048..295541 + 497 91974737 - RPD_0255 - succinic semialdehyde dehydrogenase 256 69.00 +1 295704..296390 - 228 91974738 - RPD_0256 - hypothetical protein 257 66.26 0 296392..297378 - 328 91974739 - RPD_0257 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 258 66.67 0 297378..298202 - 274 91974740 - RPD_0258 - binding-protein-dependent transport systems inner membrane component 259 70.11 +1 298199..299011 - 270 91974741 - RPD_0259 - ABC transporter related 260 62.75 0 299022..300143 - 373 91974742 - RPD_0260 - perplasmic binding protein of ABC transporter 261 71.96 +2 300297..301109 + 270 91974743 - RPD_0261 - creatininase 262 65.69 0 301191..302822 - 543 91974744 - RPD_0262 - ferredoxin-dependent glutamate synthase 263 68.39 0 303023..304009 + 328 91974745 - RPD_0263 - hypothetical protein 264 68.72 +1 304010..305326 + 438 91974746 - RPD_0264 - FolC bifunctional protein 265 67.17 0 305411..306409 + 332 91974747 - RPD_0265 - zinc-binding alcohol dehydrogenase 266 60.34 -1 306439..306675 - 78 91974748 - RPD_0266 - hypothetical protein 267 67.31 0 307917..308537 + 206 91974749 - RPD_0267 - hypothetical protein 268 63.44 0 308588..308866 + 92 91974750 - RPD_0268 - transglycosylase-associated protein 269 66.16 0 309048..309830 - 260 91974751 - RPD_0269 - short-chain dehydrogenase/reductase SDR 270 69.29 +1 310089..311156 + 355 91974752 - RPD_0270 - acyl-CoA dehydrogenase-like 271 66.15 0 311182..312342 + 386 91974753 - RPD_0271 - acyl-CoA dehydrogenase-like 272 67.66 0 312486..313292 + 268 91974754 - RPD_0272 - enoyl-CoA hydratase/isomerase 273 66.93 0 313355..314119 - 254 91974755 - RPD_0273 - hypothetical protein 274 67.81 0 314122..314910 - 262 91974756 - RPD_0274 - enoyl-CoA hydratase 275 62.69 0 315107..316312 - 401 91974757 - RPD_0275 - putative ureA/short-chain amide ABC transporter 276 66.29 0 316528..317322 + 264 91974758 - RPD_0276 - nuclease (SNase-like) 277 67.67 0 317343..318836 + 497 91974759 - RPD_0277 - peptidase M48, Ste24p 278 62.82 0 319035..320333 - 432 91974760 - RPD_0278 - transcription factor CarD 279 56.93 -2 320466..320804 - 112 91974761 - RPD_0279 - 4Fe-4S ferredoxin, iron-sulfur binding 280 65.56 0 320879..321148 - 89 91974762 - RPD_0280 - RNA-binding S4 281 67.86 0 321188..324547 - 1119 91974763 - RPD_0281 - helicase-like 282 65.31 0 324975..325856 - 293 91974764 - RPD_0282 - hypothetical protein 283 66.67 0 326169..326474 + 101 91974765 rpmB RPD_0283 - 50S ribosomal protein L28 284 64.26 0 326692..330009 + 1105 91974766 - RPD_0284 - multi-sensor hybrid histidine kinase 285 67.31 0 330097..331176 - 359 91974767 - RPD_0285 - hypothetical protein 286 67.56 0 331173..333068 - 631 91974768 - RPD_0286 - cobalt chelatase, pCobT subunit 287 63.15 0 333223..334218 - 331 91974769 - RPD_0287 - cobalt chelatase, pCobS small subunit 288 64.51 0 334887..335534 - 215 91974770 - RPD_0290 - heat shock protein DnaJ-like 289 61.76 0 335604..335909 + 101 91974771 - RPD_0291 - BolA-like protein 290 67.04 0 335951..337273 - 440 91974772 - RPD_0292 - hypothetical protein 291 69.63 +1 337288..338436 - 382 91974773 - RPD_0293 - 3-dehydroquinate synthase 292 70.08 +1 338433..339047 - 204 91974774 - RPD_0294 - shikimate kinase 293 53.74 -2 339225..339371 + 48 91974775 - RPD_0295 - hypothetical protein 294 67.05 0 339389..340444 + 351 91974776 - RPD_0296 - tyrosine recombinase XerD 295 66.46 0 340595..341569 + 324 91974777 - RPD_0297 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 296 66.12 0 341987..343450 + 487 91974778 - RPD_0298 - hypothetical protein 297 63.92 0 343844..346684 - 946 91974779 - RPD_0299 - preprotein translocase subunit SecA 298 64.81 0 347027..347944 + 305 91974780 - RPD_0300 - PpiC-type peptidyl-prolyl cis-trans isomerase 299 65.06 0 348152..349207 - 351 91974781 - RPD_0301 - acyltransferase 3 300 70.98 +1 349371..351848 + 825 91974782 - RPD_0302 - ATP-dependent helicase HrpB 301 66.28 0 351980..352492 + 170 91974783 - RPD_0303 - hypothetical protein 302 70.90 +1 352495..353367 - 290 91974784 - RPD_0304 - hypothetical protein 303 60.74 -1 353514..354239 - 241 91974785 - RPD_0305 - acetoacetyl-CoA reductase 304 66.58 0 354417..355595 - 392 91974786 - RPD_0306 - acetyl-CoA acetyltransferase 305 58.46 -1 355878..356486 + 202 91974787 - RPD_0307 - polyhydroxyalkanoate synthesis repressor PhaR 306 67.35 0 356488..358239 - 583 91974788 - RPD_0308 - GGDEF domain-containing protein 307 66.17 0 358341..358739 + 132 91974789 - RPD_0309 - hypothetical protein 308 66.51 0 358756..359406 - 216 91974790 - RPD_0310 - hypothetical protein 309 61.75 0 359642..359824 - 60 91974791 rpmF RPD_0311 - 50S ribosomal protein L32 310 67.68 0 360016..360705 - 229 91974792 mtgA RPD_0312 - monofunctional biosynthetic peptidoglycan transglycosylase 311 69.46 +1 360822..361787 + 321 91974793 - RPD_0313 - polyprenyl synthetase 312 66.38 0 361795..362481 + 228 91974794 - RPD_0314 - hypothetical protein 313 66.97 0 362564..364216 + 550 91974795 - RPD_0315 - Na+/H+ antiporter 314 63.15 0 364246..365580 - 444 91974796 - RPD_0316 - ferric reductase-like transmembrane component-like 315 66.59 0 365780..367105 - 441 91974797 ispG RPD_0317 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 316 65.68 0 367135..368049 - 304 91974798 - RPD_0318 - hypothetical protein 317 67.48 0 368182..368670 - 162 91974799 - RPD_0319 - zinc uptake regulator ZUR 318 70.06 +1 368865..370073 - 402 91974800 - RPD_0320 - beta-ketoadipyl CoA thiolase 319 70.35 +1 370238..373009 + 923 91974801 - RPD_0321 - DNA mismatch repair protein 320 64.68 0 373035..374597 - 520 91974802 - RPD_0322 - Acetyl-CoA hydrolase 321 63.39 0 375533..376999 - 488 91974803 - RPD_0323 - putative Omp2b porin 322 60.39 -1 377484..377993 + 169 91974804 - RPD_0324 - regulatory protein, MarR 323 64.65 0 378222..379013 - 263 91974805 - RPD_0325 - hypothetical protein 324 69.41 +1 379721..380266 + 181 91974806 - RPD_0326 - hypothetical protein 325 61.01 -1 380435..381637 + 400 91974807 - RPD_0327 - histidine kinase, dimerisation/phosphoacceptor 64.98 MEAN 3.46 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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