IslandPathversion 1.0

IslandPath Analysis: Rhodopseudomonas palustris BisB5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.98 STD DEV: 3.46
Rhodopseudomonas palustris BisB5, complete genome - 1..4892717
4397 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2278	 60.81	-1	2549448..2550506	+	352	91976760	-	RPD_2286	-	hypothetical protein
2279	 61.46	-1	2550620..2550907	+	95	91976761	-	RPD_2287	-	hypothetical protein
2280	 58.13	-1	2550900..2552528	+	542	91976762	-	RPD_2288	-	hypothetical protein
2281	 61.82	0	2552543..2554171	-	542	91976763	-	RPD_2289	-	superfamily I DNA/RNA helicase-like protein
2282	 60.20	-1	2554273..2556282	-	669	91976764	-	RPD_2290	-	ATP-dependent OLD family endonuclease
2283	 58.45	-1	2556737..2557174	+	145	91976765	-	RPD_2291	-	hypothetical protein
2284	 62.71	0	2557198..2558232	-	344	91976766	-	RPD_2292	-	patatin
2285	 63.99	0	2558229..2558639	-	136	91976767	-	RPD_2293	-	hypothetical protein
2286	 63.38	0	2558681..2559928	-	415	91976768	-	RPD_2294	-	hypothetical protein
2287	 60.44	-1	2560110..2560430	+	106	91976769	-	RPD_2295	-	transcriptional regulator
2288	 60.82	-1	2560427..2561350	+	307	91976770	-	RPD_2296	-	hypothetical protein
2289	 59.56	-1	2561370..2562002	+	210	91976771	-	RPD_2297	-	hypothetical protein
2290	 62.86	0	2562005..2563999	+	664	91976772	-	RPD_2298	-	tetratricopeptide TPR_2
2291	 65.15	0	2564406..2565329	-	307	91976773	-	RPD_2299	-	hypothetical protein
2292	 64.22	0	2566056..2567240	-	394	91976774	-	RPD_2300	-	acetylornithine and succinylornithine aminotransferases
2293	 62.24	0	2567237..2568502	-	421	91976775	-	RPD_2301	-	5-aminolevulinate synthase
2294	 65.17	0	2568499..2569365	-	288	91976776	-	RPD_2302	-	pyridoxal kinase
2295	 64.06	0	2569362..2570627	-	421	91976777	-	RPD_2303	-	benzoate transporter
2296	 65.27	0	2570747..2572174	+	475	91976778	-	RPD_2304	-	regulatory protein GntR, HTH
2297	 63.75	0	2572328..2573632	+	434	91976779	-	RPD_2305	-	serine hydroxymethyltransferase
2298	 62.87	0	2573651..2574466	+	271	91976780	-	RPD_2306	-	hypothetical protein
2299	 60.40	-1	2574611..2575009	-	132	91976781	-	RPD_2307	-	Cu(I)-responsive transcriptional regulator
2300	 64.09	0	2575121..2577646	-	841	91976782	-	RPD_2308	-	heavy metal translocating P-type ATPase
2301	 60.78	-1	2577884..2578087	+	67	91976783	-	RPD_2309	-	heavy metal transport/detoxification protein
2302	 60.30	-1	2578292..2581480	-	1062	91976784	-	RPD_2310	-	hydrophobe/amphiphile efflux-1 HAE1
2303	 62.72	0	2581477..2582718	-	413	91976785	-	RPD_2311	-	secretion protein HlyD
2304	 69.71	+1	2582974..2583729	-	251	91976786	-	RPD_2312	-	uroporphyrin-III C-methyltransferase
2305	 70.26	+1	2583729..2585090	-	453	91976787	-	RPD_2313	-	cobyrinic acid a,c-diamide synthase
2306	 70.26	+1	2585077..2585856	-	259	91976788	-	RPD_2314	-	precorrin-4 C11-methyltransferase
2307	 73.03	+2	2585853..2586245	-	130	91976789	-	RPD_2315	-	cobalamin biosynthesis protein G; CbiG
2308	 71.80	+1	2586242..2587351	-	369	91976790	-	RPD_2316	-	precorrin-6y C5,15-methyltransferase, subunit CbiE
2309	 71.47	+1	2587497..2588246	+	249	91976791	-	RPD_2317	-	cobalt-precorrin-6x reductase
2310	 69.69	+1	2588213..2588974	-	253	91976792	-	RPD_2318	-	precorrin-3B C17-methyltransferase
2311	 68.04	0	2588971..2589699	-	242	91976793	-	RPD_2319	-	precorrin-2 C20-methyltransferase
2312	 70.00	+1	2589696..2590325	-	209	91976794	cobH	RPD_2320	-	precorrin-8X methylmutase
2313	 64.12	0	2590322..2590909	-	195	91976795	-	RPD_2321	-	hypothetical protein
2314	 67.29	0	2591366..2592496	-	376	91976796	-	RPD_2322	-	citrate utilization protein B
2315	 68.59	+1	2592483..2593781	-	432	91976797	-	RPD_2323	-	tricarballylate dehydrogenase
2316	 67.65	0	2594293..2595405	+	370	91976798	-	RPD_2324	-	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
2317	 66.80	0	2595402..2596178	+	258	91976799	-	RPD_2325	-	cobalamin 5'-phosphate synthase
2318	 61.42	-1	2596247..2597008	+	253	91976800	-	RPD_2326	-	precorrin 6A synthase
2319	 67.00	0	2597048..2598526	-	492	91976801	-	RPD_2327	-	pyruvate kinase
2320	 60.63	-1	2598754..2599101	+	115	91976802	-	RPD_2328	-	hypothetical protein
2321	 60.98	-1	2599330..2600085	+	251	91976803	-	RPD_2329	-	ABC transporter related
2322	 65.06	0	2600078..2600824	+	248	91976804	-	RPD_2330	-	ABC transporter related
2323	 61.64	0	2600864..2601739	+	291	91976805	-	RPD_2331	-	inner-membrane translocator
2324	 63.59	0	2601741..2602715	+	324	91976806	-	RPD_2332	-	inner-membrane translocator
2325	 65.83	0	2603101..2605623	-	840	91976807	-	RPD_2333	-	hypothetical protein
2326	 62.33	0	2606211..2606855	+	214	91976808	-	RPD_2334	-	hypothetical protein
2327	 67.36	0	2606870..2607880	+	336	91976809	-	RPD_2335	-	phosphate transporter
2328	 62.86	0	2608101..2608415	-	104	91976810	-	RPD_2336	-	small multidrug resistance protein
2329	 65.31	0	2608618..2610243	+	541	91976811	-	RPD_2337	-	peptide chain release factor 3
2330	 68.73	+1	2610357..2610695	+	112	91976812	-	RPD_2338	-	hypothetical protein
2331	 47.76	-2	2610904..2612463	+	519	91976813	-	RPD_2339	-	hypothetical protein
2332	 68.40	0	2612477..2612881	-	134	91976814	-	RPD_2340	-	integral membrane protein
2333	 70.79	+1	2612912..2613736	-	274	91976815	-	RPD_2341	-	NmrA-like
2334	 69.28	+1	2613835..2614485	+	216	91976816	-	RPD_2342	-	regulatory protein, TetR
2335	 70.94	+1	2614703..2615428	+	241	91976817	-	RPD_2343	-	hypothetical protein
2336	 63.82	0	2615672..2617006	+	444	91976818	-	RPD_2344	-	hypothetical protein
2337	 65.64	0	2617018..2618763	+	581	91976819	-	RPD_2345	-	hypothetical protein
2338	 67.89	0	2619049..2621331	+	760	91976820	-	RPD_2346	-	CHASE2
2339	 65.54	0	2621445..2622860	-	471	91976821	-	RPD_2347	-	multi-sensor signal transduction histidine kinase
2340	 65.52	0	2623195..2623980	-	261	91976822	-	RPD_2348	-	hemin importer ATP-binding subunit
2341	 67.86	0	2623977..2625062	-	361	91976823	-	RPD_2349	-	transport system permease protein
2342	 65.23	0	2625059..2626030	-	323	91976824	-	RPD_2350	-	periplasmic binding protein
2343	 56.67	-2	2626027..2626236	-	69	91976825	-	RPD_2351	-	hypothetical protein
2344	 67.50	0	2626562..2628004	+	480	91976826	-	RPD_2352	-	coproporphyrinogen III oxidase
2345	 68.15	0	2628066..2628737	+	223	91976827	-	RPD_2353	-	NmrA-like
2346	 63.63	0	2628950..2631286	+	778	91976828	-	RPD_2354	-	TonB-dependent haem/haemoglobin receptor
2347	 60.91	-1	2631279..2631695	+	138	91976829	-	RPD_2355	-	antibiotic biosynthesis monooxygenase
2348	 64.77	0	2631716..2632243	+	175	91976830	-	RPD_2356	-	hypothetical protein
2349	 70.43	+1	2632236..2633033	+	265	91976831	-	RPD_2357	-	MotA/TolQ/ExbB proton channel
2350	 64.84	0	2633043..2633480	+	145	91976832	-	RPD_2358	-	biopolymer transport protein ExbD/TolR
2351	 71.45	+1	2633477..2634313	+	278	91976833	-	RPD_2359	-	TonB-like
2352	 63.64	0	2634347..2635138	-	263	91976834	-	RPD_2360	-	regulatory proteins, IclR
2353	 62.93	0	2635313..2636464	+	383	91976835	-	RPD_2361	-	extracellular ligand-binding receptor
2354	 63.47	0	2636529..2637404	+	291	91976836	-	RPD_2362	-	inner-membrane translocator
2355	 64.52	0	2637409..2638386	+	325	91976837	-	RPD_2363	-	inner-membrane translocator
2356	 64.77	0	2638383..2639120	+	245	91976838	-	RPD_2364	-	ABC transporter related
2357	 65.40	0	2639107..2639814	+	235	91976839	-	RPD_2365	-	ABC transporter related
2358	 64.77	0	2639835..2641151	+	438	91976840	-	RPD_2366	-	aminotransferase class-III
2359	 66.23	0	2641306..2642898	+	530	91976841	-	RPD_2367	-	5-oxoprolinase (ATP-hydrolyzing)
2360	 66.57	0	2642910..2644952	+	680	91976842	-	RPD_2368	-	5-oxoprolinase (ATP-hydrolyzing)
2361	 61.06	-1	2645423..2645779	-	118	91976843	-	RPD_2369	-	hypothetical protein
2362	 64.32	0	2645785..2647998	+	737	91976844	-	RPD_2370	-	flagellin
2363	 62.43	0	2648071..2648637	+	188	91976845	-	RPD_2371	-	hypothetical protein
2364	 60.11	-1	2648768..2649514	+	248	91976846	-	RPD_2372	-	regulatory protein, LuxR
2365	 60.76	-1	2649869..2650477	+	202	91976847	-	RPD_2373	-	regulatory protein, LuxR
2366	 59.81	-1	2650805..2651767	-	320	91976848	-	RPD_2374	-	beta-lactamase-like
2367	 63.66	0	2652083..2652514	+	143	91976849	-	RPD_2375	-	thioredoxin-related
2368	 64.78	0	2652637..2653218	+	193	91976850	-	RPD_2376	-	cytochrome c family protein
2369	 64.30	0	2653481..2655760	+	759	91976851	-	RPD_2377	-	ATP-binding region, ATPase-like
2370	 64.76	0	2655841..2657568	+	575	91976852	-	RPD_2378	-	TrkA-N
2371	 64.46	0	2658828..2660144	+	438	91976853	-	RPD_2380	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2372	 61.87	0	2660157..2660531	+	124	91976854	-	RPD_2381	-	hypothetical protein
2373	 63.50	0	2660672..2661145	+	157	91976855	-	RPD_2382	-	thioesterase superfamily protein
2374	 65.09	0	2662006..2662641	+	211	91976856	-	RPD_2383	-	transcriptional regulator PadR-like
2375	 59.84	-1	2662843..2663457	+	204	91976857	-	RPD_2384	-	4-hydroxybenzoyl-CoA thioesterase
2376	 58.15	-1	2663451..2663720	+	89	91976858	-	RPD_2385	-	hypothetical protein
2377	 63.17	0	2663804..2664289	+	161	91976859	-	RPD_2386	-	hypothetical protein
64.98	MEAN

3.46	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.