IslandPath Analysis: Rhodopseudomonas palustris BisB5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.98   STD DEV: 3.46
Rhodopseudomonas palustris BisB5, complete genome - 1..4892717
4397 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1947	 69.60	+1	2189716..2190294	-	192	91976429	-	RPD_1952	-	hypothetical protein
1948	 66.44	0	2190326..2192578	-	750	91976430	-	RPD_1953	-	penicillin-binding protein 1A
1949	 63.85	0	2193043..2195064	+	673	91976431	-	RPD_1954	-	ATPase
1950	 66.47	0	2195061..2195570	+	169	91976432	-	RPD_1955	-	hypothetical protein
1951	 63.48	0	2195992..2197059	-	355	91976433	-	RPD_1956	-	twin-arginine translocation pathway signal
1952	 67.00	0	2197446..2197742	+	98	91976434	-	RPD_1957	-	hypothetical protein
1953	 69.30	+1	2197957..2199549	+	530	91976435	-	RPD_1958	-	major facilitator transporter
1954	 68.66	+1	2199725..2201128	+	467	91976436	-	RPD_1959	-	hypothetical protein
1955	 59.52	-1	2201308..2201475	+	55	91976437	-	RPD_1960	-	Flp/Fap pilin component
1956	 63.70	0	2201747..2201881	+	44	91976438	-	RPD_1961	-	hypothetical protein
1957	 62.34	0	2202107..2202337	+	76	91976439	-	RPD_1962	-	hypothetical protein
1958	 67.35	0	2202441..2203316	+	291	91976440	-	RPD_1963	-	hypothetical protein
1959	 71.49	+1	2203420..2204580	+	386	91976441	-	RPD_1964	-	hypothetical protein
1960	 54.86	-2	2204685..2204972	-	95	91976442	-	RPD_1965	-	excinuclease ABC subunit C
1961	 69.64	+1	2205112..2206287	+	391	91976443	-	RPD_1966	-	Phage portal protein, HK97
1962	 67.12	0	2206328..2206546	+	72	91976444	-	RPD_1967	-	hypothetical protein
1963	 68.31	0	2206556..2206738	+	60	91976445	-	RPD_1968	-	hypothetical protein
1964	 69.63	+1	2207053..2207760	+	235	91976446	-	RPD_1969	-	peptidase U35, phage prohead HK97
1965	 67.67	0	2207879..2209174	+	431	91976447	-	RPD_1970	-	phage major capsid protein, HK97
1966	 50.91	-2	2209291..2209785	-	164	91976448	-	RPD_1971	-	hypothetical protein
1967	 56.14	-2	2210219..2211691	+	490	91976449	-	RPD_1972	-	DNA-cytosine methyltransferase
1968	 55.65	-2	2211750..2213102	+	450	91976450	-	RPD_1973	-	ATPase
1969	 53.95	-2	2213099..2214403	+	434	91976451	-	RPD_1974	-	hypothetical protein
1970	 69.91	+1	2214705..2215352	+	215	91976452	-	RPD_1975	-	hypothetical protein
1971	 71.07	+1	2215477..2216589	+	370	91976453	-	RPD_1976	-	hypothetical protein
1972	 67.91	0	2216808..2217128	+	106	91976454	-	RPD_1977	-	hypothetical protein
1973	 68.87	+1	2217228..2217545	-	105	91976455	-	RPD_1978	-	hypothetical protein
1974	 73.76	+2	2217764..2218468	-	234	91976456	-	RPD_1979	-	peptidase S1 and S6, chymotrypsin/Hap
1975	 71.93	+2	2218591..2219160	+	189	91976457	-	RPD_1980	-	bacteriophage protein
1976	 71.21	+1	2219157..2219486	+	109	91976458	-	RPD_1981	-	hypothetical protein
1977	 71.05	+1	2219557..2219967	+	136	91976459	-	RPD_1982	-	gene transfer agent (GTA) orfg8
1978	 67.65	0	2219981..2220388	+	135	91976460	-	RPD_1983	-	gene transfer agent (GTA) orf
1979	 72.64	+2	2220396..2220713	+	105	91976461	-	RPD_1984	-	gene transfer agent (GTA) orfg10
1980	 67.17	0	2220710..2220907	+	65	91976462	-	RPD_1985	-	hypothetical protein
1981	 69.31	+1	2220910..2221476	+	188	91976463	-	RPD_1986	-	gene transfer agent (GTA) orfg11
1982	 69.18	+1	2221564..2222199	+	211	91976464	-	RPD_1987	-	hypothetical protein
1983	 59.25	-1	2222512..2223873	+	453	91976465	-	RPD_1988	-	Xaa-Pro aminopeptidase-like
1984	 53.45	-2	2223929..2224609	+	226	91976466	-	RPD_1989	-	hypothetical protein
1985	 71.67	+1	2224870..2225049	+	59	91976467	-	RPD_1990	-	transposase and inactivated derivative
1986	 69.59	+1	2225261..2226184	+	307	91976468	-	RPD_1991	-	bacteriophage protein
1987	 70.95	+1	2226225..2226668	+	147	91976469	-	RPD_1992	-	putative phage cell wall peptidase, NlpC/P60
1988	 70.95	+1	2226929..2230780	+	1283	91976470	-	RPD_1993	-	gene transfer agent (GTA) orfg15
1989	 67.28	0	2230793..2232427	+	544	91976471	-	RPD_1994	-	hypothetical protein
1990	 69.92	+1	2232549..2233286	+	245	91976472	-	RPD_1995	-	putative glycohydrolase
1991	 68.24	0	2233289..2233861	+	190	91976473	-	RPD_1996	-	hypothetical protein
1992	 67.26	0	2233957..2234631	+	224	91976474	-	RPD_1997	-	winged helix family two component transcriptional regulator
1993	 67.31	0	2234685..2236082	+	465	91976475	-	RPD_1998	-	periplasmic sensor signal transduction histidine kinase
1994	 67.82	0	2236186..2236707	+	173	91976476	-	RPD_1999	-	LipA a lipoprotein
1995	 66.31	0	2236920..2238320	+	466	91976477	-	RPD_2000	-	hypothetical protein
1996	 70.81	+1	2238428..2239585	+	385	91976478	-	RPD_2001	-	cytochrome c-type biogenesis protein cycH
1997	 67.68	0	2239710..2240204	+	164	91976479	-	RPD_2002	-	cytochrome c-type biogenesis protein CcmE
1998	 66.77	0	2240201..2242183	+	660	91976480	-	RPD_2003	-	cytochrome c-type biogenesis protein CcmF
1999	 65.86	0	2242198..2242695	+	165	91976481	-	RPD_2004	-	cytochrome C biogenesis protein
2000	 65.63	0	2242785..2243843	-	352	91976482	-	RPD_2005	-	hypothetical protein
2001	 64.46	0	2243897..2245933	-	678	91976483	-	RPD_2006	-	endothelin-converting protein 1
2002	 64.21	0	2246081..2246731	-	216	91976484	-	RPD_2007	-	hypothetical protein
2003	 63.62	0	2247133..2247624	+	163	91976485	-	RPD_2008	-	hypothetical protein
2004	 64.01	0	2247663..2248151	-	162	91976486	-	RPD_2009	-	hypothetical protein
2005	 65.45	0	2248220..2249125	-	301	91976487	-	RPD_2010	-	ferredoxin
2006	 67.30	0	2249476..2251056	+	526	91976488	-	RPD_2011	-	peptidase S1C, Do
2007	 65.43	0	2251297..2252022	+	241	91976489	-	RPD_2012	-	winged helix family two component transcriptional regulator
2008	 67.21	0	2252006..2253478	+	490	91976490	-	RPD_2013	-	periplasmic sensor signal transduction histidine kinase
2009	 66.90	0	2253475..2256444	+	989	91976491	-	RPD_2014	-	glutamate-ammonia-ligase adenylyltransferase
2010	 65.98	0	2256448..2256738	-	96	91976492	-	RPD_2015	-	hypothetical protein
2011	 64.79	0	2256871..2257884	-	337	91976493	-	RPD_2016	-	helix-turn-helix, AraC type
2012	 66.03	0	2258299..2261769	+	1156	91976494	-	RPD_2017	-	Outer membrane autotransporter barrel
2013	 64.90	0	2261930..2264245	-	771	91976495	-	RPD_2018	-	ATP-binding region, ATPase-like
2014	 67.03	0	2264449..2265828	-	459	91976496	-	RPD_2019	-	cation diffusion facilitator family transporter
2015	 68.42	0	2265961..2266929	-	322	91976497	-	RPD_2020	-	zinc-binding alcohol dehydrogenase
2016	 65.36	0	2266957..2267952	-	331	91976498	-	RPD_2021	-	2-nitropropane dioxygenase, NPD
2017	 64.63	0	2268201..2268986	-	261	91976499	-	RPD_2022	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
2018	 66.36	0	2269138..2270112	-	324	91976500	-	RPD_2023	-	2-dehydropantoate 2-reductase
2019	 64.64	0	2270234..2271766	-	510	91976501	-	RPD_2024	-	hypothetical protein
2020	 63.65	0	2271794..2272291	-	165	91976502	-	RPD_2025	-	hypothetical protein
2021	 62.13	0	2272374..2273387	-	337	91976503	-	RPD_2026	-	hypothetical protein
2022	 64.40	0	2273593..2274870	-	425	91976504	-	RPD_2027	-	formyl-coenzyme A transferase
2023	 63.35	0	2275006..2275788	-	260	91976505	-	RPD_2028	-	GntR family transcriptional regulator
2024	 59.80	-1	2275915..2276307	-	130	91976506	-	RPD_2029	-	hypothetical protein
2025	 65.48	0	2276430..2277356	+	308	91976507	-	RPD_2030	-	pyrroloquinoline quinone biosynthesis protein PqqB
2026	 63.49	0	2277362..2278117	+	251	91976508	-	RPD_2031	-	pyrroloquinoline quinone biosynthesis protein PqqC
2027	 68.28	0	2278127..2278435	+	102	91976509	-	RPD_2032	-	coenzyme PQQ synthesis D
2028	 65.91	0	2278432..2279619	+	395	91976510	-	RPD_2033	-	pyrroloquinoline quinone biosynthesis protein PqqE
2029	 64.14	0	2279945..2281054	-	369	91976511	-	RPD_2034	-	zinc-binding alcohol dehydrogenase
2030	 69.56	+1	2281270..2282790	-	506	91976512	-	RPD_2035	-	ATPase
2031	 59.10	-1	2282962..2283582	-	206	91976513	-	RPD_2036	-	regulatory protein, TetR
2032	 65.38	0	2283664..2284755	+	363	91976514	-	RPD_2037	-	secretion protein HlyD
2033	 64.62	0	2284752..2285825	+	357	91976515	-	RPD_2038	-	secretion protein HlyD
2034	 62.19	0	2285822..2288878	+	1018	91976516	-	RPD_2039	-	acriflavin resistance protein
2035	 61.40	-1	2288875..2289159	+	94	91976517	-	RPD_2040	-	hypothetical protein
2036	 64.24	0	2289189..2290382	+	397	91976518	-	RPD_2041	-	patatin
2037	 60.33	-1	2290458..2291072	+	204	91976519	-	RPD_2042	-	hypothetical protein
2038	 65.09	0	2291255..2292208	+	317	91976520	-	RPD_2043	-	tRNA-dihydrouridine synthase A
2039	 67.23	0	2292249..2292779	-	176	91976521	-	RPD_2044	-	hypothetical protein
2040	 68.60	+1	2292790..2292996	-	68	91976522	-	RPD_2045	-	hypothetical protein
2041	 65.41	0	2293042..2294634	-	530	91976523	-	RPD_2046	-	periplasmic sensor signal transduction histidine kinase
2042	 64.15	0	2294807..2296000	-	397	91976524	-	RPD_2047	-	3-hydroxyisobutyrate dehydrogenase
2043	 68.45	+1	2296000..2297118	+	372	91976525	-	RPD_2048	-	MRP ATP/GTP-binding protein
2044	 61.34	-1	2297338..2298426	+	362	91976526	-	RPD_2049	-	twin-arginine translocation pathway signal
2045	 62.98	0	2298539..2300380	-	613	91976527	-	RPD_2050	-	TRAP dicarboxylate transporter- DctM subunit
2046	 58.08	-1	2300418..2301011	-	197	91976528	-	RPD_2051	-	tripartite ATP-independent periplasmic transporter DctQ
64.98	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.