IslandPath Analysis: Rhodopseudomonas palustris BisB5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.98   STD DEV: 3.46
Rhodopseudomonas palustris BisB5, complete genome - 1..4892717
4397 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
61	 62.06	0	71131..71868	+	245	91974543	-	RPD_0061	-	undecaprenyl diphosphate synthase
62	 60.48	-1	71985..73535	+	516	91974544	-	RPD_0062	-	magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
63	 61.34	-1	73673..74686	+	337	91974545	-	RPD_0063	-	hypothetical protein
64	 57.47	-2	75240..76196	-	318	91974546	-	RPD_0064	-	helix-turn-helix, AraC type
65	 62.70	0	76970..79036	+	688	91974547	-	RPD_0065	-	chemotaxis sensory transducer
66	 61.20	-1	79164..81395	+	743	91974548	-	RPD_0066	-	GGDEF domain-containing protein
67	 66.67	0	82163..83650	-	495	91974549	-	RPD_0067	-	ATP-binding region, ATPase-like
68	 64.47	0	83786..84514	+	242	91974550	-	RPD_0068	-	ribonuclease P protein component
69	 63.24	0	84531..86396	+	621	91974551	-	RPD_0069	-	putative inner membrane protein translocase component YidC
70	 66.21	0	86689..87342	+	217	91974552	-	RPD_0070	-	GTPase EngB
71	 72.36	+2	87339..87707	+	122	91974553	-	RPD_0071	-	hypothetical protein
72	 64.27	0	87857..88816	+	319	91974554	-	RPD_0072	-	acetylglutamate kinase
73	 67.62	0	88816..89970	+	384	91974555	-	RPD_0073	-	peptidoglycan binding domain-containing protein
74	 64.25	0	89967..90668	+	233	91974556	-	RPD_0074	-	pyrimidine 5-nucleotidase
75	 68.32	0	90762..91607	+	281	91974557	dapD	RPD_0075	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
76	 55.21	-2	91810..92097	+	95	91974558	-	RPD_0076	-	hypothetical protein
77	 66.24	0	92115..93281	+	388	91974559	-	RPD_0077	-	succinyl-diaminopimelate desuccinylase
78	 64.80	0	93536..94498	-	320	91974560	-	RPD_0078	-	transposase, IS4
79	 69.51	+1	94698..95435	-	245	91974561	truA	RPD_0079	-	tRNA pseudouridine synthase A
80	 69.35	+1	95609..96541	-	310	91974562	fmt	RPD_0080	-	methionyl-tRNA formyltransferase
81	 62.31	0	96621..97148	-	175	91974563	-	RPD_0081	-	peptide deformylase
82	 66.50	0	97298..98515	+	405	91974564	-	RPD_0082	-	hypothetical protein
83	 67.83	0	98724..100097	+	457	91974565	-	RPD_0083	-	major facilitator transporter
84	 67.13	0	100126..100554	-	142	91974566	-	RPD_0084	-	hypothetical protein
85	 67.66	0	100574..101179	-	201	91974567	recR	RPD_0085	-	recombination protein RecR
86	 67.29	0	101293..101613	-	106	91974568	-	RPD_0086	-	hypothetical protein
87	 67.79	0	101648..103522	-	624	91974569	-	RPD_0087	-	DNA polymerase III subunits gamma and tau
88	 64.81	0	103996..104481	+	161	91974570	-	RPD_0088	-	histidine triad (HIT) protein
89	 66.67	0	104486..105418	+	310	91974571	-	RPD_0089	-	NUDIX hydrolase
90	 67.53	0	105415..106344	+	309	91974572	-	RPD_0090	-	PfkB
91	 64.96	0	106399..107100	-	233	91974573	-	RPD_0091	-	hypothetical protein
92	 71.10	+1	107176..107604	-	142	91974574	-	RPD_0092	-	hypothetical protein
93	 65.10	0	107613..108380	-	255	91974575	-	RPD_0093	-	hydroxyacylglutathione hydrolase
94	 70.07	+1	108557..109321	+	254	91974576	-	RPD_0094	-	methyltransferase type 11
95	 66.25	0	109382..110107	-	241	91974577	-	RPD_0095	-	hypothetical protein
96	 69.97	+1	110600..111478	-	292	91974578	-	RPD_0096	-	HemK family modification methylase
97	 66.11	0	111521..112606	-	361	91974579	prfA	RPD_0097	-	peptide chain release factor 1
98	 67.90	0	112658..114925	-	755	91974580	-	RPD_0098	-	PTSINtr with GAF domain, PtsP
99	 66.19	0	115231..116484	-	417	91974581	-	RPD_0099	-	aspartate kinase
100	 65.62	0	116843..117604	+	253	91974582	-	RPD_0100	-	3-demethylubiquinone-9 3-methyltransferase
101	 66.42	0	117713..118528	-	271	91974583	-	RPD_0101	-	hypothetical protein
102	 68.33	0	118681..119580	+	299	91974584	-	RPD_0102	-	hypothetical protein
103	 65.75	0	119581..120015	-	144	91974585	-	RPD_0103	-	hypothetical protein
104	 65.67	0	120224..120727	-	167	91974586	-	RPD_0104	-	hypothetical protein
105	 66.55	0	120724..121599	-	291	91974587	-	RPD_0105	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
106	 64.26	0	121596..121886	-	96	91974588	-	RPD_0106	-	glutaredoxin GrxC
107	 69.47	+1	121938..122756	-	272	91974589	-	RPD_0107	-	phosphoribosyltransferase
108	 66.01	0	122868..123170	+	100	91974590	-	RPD_0108	-	hypothetical protein
109	 70.26	+1	123232..124065	+	277	91974591	-	RPD_0109	-	methyltransferase type 11
110	 66.42	0	124127..124528	-	133	91974592	-	RPD_0110	-	NUDIX hydrolase
111	 68.28	0	124701..125942	-	413	91974593	argJ	RPD_0111	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
112	 68.24	0	126213..126722	-	169	91974594	-	RPD_0112	-	OsmC-like protein
113	 70.48	+1	126781..127566	-	261	91974595	-	RPD_0113	-	ABC transporter related
114	 68.87	+1	127566..128426	-	286	91974596	-	RPD_0114	-	binding-protein-dependent transport systems inner membrane component
115	 64.74	0	128620..129606	-	328	91974597	-	RPD_0115	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
116	 65.77	0	129849..132650	+	933	91974598	-	RPD_0116	-	PII uridylyl-transferase
117	 68.25	0	132778..133347	+	189	91974599	-	RPD_0117	-	putative threonine efflux protein-like
118	 65.62	0	133645..135261	-	538	91974600	-	RPD_0118	-	HWE histidine kinase
119	 66.19	0	135398..138127	-	909	91974601	-	RPD_0119	-	sensor histidine kinase with PAS/PAC
120	 63.17	0	138274..138702	-	142	91974602	-	RPD_0120	-	hypothetical protein
121	 60.77	-1	138971..140191	+	406	91974603	-	RPD_0121	-	extracellular ligand-binding receptor
122	 60.24	-1	140396..140815	+	139	91974604	-	RPD_0122	-	hypothetical protein
123	 65.48	0	140960..141211	-	83	91974605	-	RPD_0123	-	hypothetical protein
124	 67.64	0	141403..143565	+	720	91974606	-	RPD_0124	-	penicillin-binding protein 1A
125	 66.80	0	143897..144667	-	256	91974607	-	RPD_0125	-	hypothetical protein
126	 62.97	0	144990..146315	-	441	91974608	-	RPD_0126	-	polyhydroxyalkanoate depolymerase, intracellular
127	 61.11	-1	146905..147660	+	251	91974609	-	RPD_0127	-	methyltransferase type 12
128	 61.85	0	147710..148540	-	276	91974610	-	RPD_0128	-	hypothetical protein
129	 68.18	0	148537..149331	-	264	91974611	-	RPD_0129	-	ABC transporter related
130	 65.99	0	149441..150763	+	440	91974612	-	RPD_0130	-	periplasmic sensor signal transduction histidine kinase
131	 67.57	0	150866..151420	+	184	91974613	-	RPD_0131	-	response regulator receiver
132	 64.79	0	151611..152090	-	159	91974614	-	RPD_0132	-	hypothetical protein
133	 66.13	0	152241..153359	+	372	91974615	-	RPD_0133	-	von Willebrand factor, type A
134	 64.87	0	153579..154247	+	222	91974616	-	RPD_0134	-	beta-lactamase-like
135	 63.94	0	154717..155706	+	329	91974617	-	RPD_0135	-	helix-turn-helix, AraC type
136	 66.43	0	155814..156233	-	139	91974618	-	RPD_0136	-	hypothetical protein
137	 66.07	0	156463..157641	-	392	91974619	-	RPD_0137	-	esterase, PHB depolymerase
138	 58.94	-1	157856..158101	-	81	91974620	-	RPD_0138	-	hypothetical protein
139	 68.18	0	158217..159605	-	462	91974621	-	RPD_0139	-	chromate transporter
140	 69.28	+1	159602..160213	-	203	91974622	-	RPD_0140	-	hypothetical protein
141	 65.12	0	160419..160742	-	107	91974623	-	RPD_0141	-	hypothetical protein
142	 64.14	0	160993..161466	+	157	91974624	-	RPD_0142	-	hypothetical protein
143	 68.78	+1	161499..161972	+	157	91974625	-	RPD_0143	-	hypothetical protein
144	 69.95	+1	161969..162517	+	182	91974626	-	RPD_0144	-	hypothetical protein
145	 70.97	+1	162595..163710	-	371	91974627	-	RPD_0145	-	hypothetical protein
146	 68.27	0	163879..165252	+	457	91974628	-	RPD_0146	-	MmgE/PrpD
147	 61.74	0	165321..165929	+	202	91974629	-	RPD_0147	-	hypothetical protein
148	 67.09	0	166201..167619	+	472	91974630	-	RPD_0148	-	malonyl-CoA decarboxylase
149	 66.99	0	167670..168587	+	305	91974631	-	RPD_0149	-	Pirin-like
150	 67.65	0	168656..169573	+	305	91974632	-	RPD_0150	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
151	 69.86	+1	169820..170602	+	260	91974633	-	RPD_0151	-	enoyl-CoA hydratase
152	 65.97	0	170705..171424	-	239	91974634	radC	RPD_0152	-	DNA repair protein RadC
153	 64.07	0	171562..173370	-	602	91974635	-	RPD_0153	-	chemotaxis sensory transducer
154	 62.41	0	173763..174749	+	328	91974636	-	RPD_0154	-	hypothetical protein
155	 64.85	0	175023..175847	-	274	91974637	-	RPD_0155	-	methionine aminopeptidase, type I
156	 64.84	0	175945..177258	-	437	91974638	-	RPD_0156	-	MscS mechanosensitive ion channel
157	 68.62	+1	177483..179273	+	596	91974639	-	RPD_0157	-	potassium/proton antiporter
158	 71.07	+1	179274..180227	-	317	91974640	mepA	RPD_0158	-	penicillin-insensitive murein endopeptidase
159	 66.62	0	180631..182859	+	742	91974641	-	RPD_0159	-	GGDEF domain-containing protein
160	 64.44	0	183064..184008	-	314	91974642	-	RPD_0160	-	hypothetical protein
64.98	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.