IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213
4813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
919	 66.76	0	1024419..1025438	-	339	39933999	-	RPA0922	-	hypothetical protein
920	 65.94	0	1025618..1026445	+	275	39934000	-	RPA0923	-	hypothetical protein
921	 65.40	0	1026442..1027467	+	341	39934001	-	RPA0924	-	cyclopropane-fatty-acyl-phospholipid synthase
922	 63.59	0	1027750..1027944	+	64	39934002	-	RPA0925	-	hypothetical protein
923	 64.10	0	1028028..1028222	+	64	39934003	-	RPA0926	-	hypothetical protein
924	 60.00	-1	1028320..1028529	-	69	39934004	-	RPA0927	-	XRE family transcriptional regulator
925	 67.53	0	1028533..1029108	-	191	39934005	-	RPA0928	-	hypothetical protein
926	 65.14	0	1029178..1029765	+	195	39934006	-	RPA0929	-	hypothetical protein
927	 67.50	0	1029992..1030594	-	200	39934007	-	RPA0930	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
928	 66.54	0	1030591..1032129	-	512	39934008	ubiD	RPA0931	-	carboxylyase-like protein
929	 66.67	0	1032245..1032790	+	181	39934009	-	RPA0932	-	hypothetical protein
930	 66.36	0	1032794..1033771	+	325	39934010	-	RPA0933	-	peptidase U32
931	 65.91	0	1033840..1034760	+	306	39934011	-	RPA0934	-	peptidase U32
932	 62.21	0	1035248..1036549	-	433	39934012	-	RPA0935	-	hypothetical protein
933	 65.27	0	1036631..1037203	+	190	39934013	-	RPA0936	-	TetR family transcriptional regulator
934	 67.43	0	1037232..1038020	-	262	39934014	-	RPA0937	-	extragenic suppressor protein SuhB
935	 68.77	+1	1038125..1039216	-	363	39934015	-	RPA0938	-	hypothetical protein
936	 70.91	+1	1039233..1039892	-	219	39934016	-	RPA0939	-	thiamine monophosphate synthase
937	 65.31	0	1039898..1040932	-	344	39934017	-	RPA0940	-	fructose-bisphosphate aldolase
938	 58.02	-2	1040987..1041310	-	107	39934018	-	RPA0941	-	hypothetical protein
939	 62.11	0	1041307..1041591	-	94	39934019	-	RPA0942	-	hypothetical protein
940	 67.50	0	1041690..1042886	-	398	39934020	pgk	RPA0943	-	phosphoglycerate kinase
941	 63.59	0	1043108..1044115	-	335	39934021	cbbG	RPA0944	-	glyceraldehyde-3-phosphate dehydrogenase, type I
942	 67.47	0	1044331..1046316	-	661	39934022	cbbT2	RPA0945	-	transketolase
943	 69.31	+1	1046611..1046988	+	125	39934023	-	RPA0946	-	hypothetical protein
944	 68.86	+1	1046985..1047395	+	136	39934024	-	RPA0947	-	hypothetical protein
945	 67.96	0	1047902..1049140	-	412	39934025	-	RPA0948	-	putative RNA methyltransferase
946	 69.05	+1	1049187..1050611	-	474	39934026	matE2	RPA0949	-	MATE efflux family protein
947	 67.61	0	1050674..1051414	-	246	39934027	tly	RPA0950	-	hemolysin A
948	 66.31	0	1051417..1051980	-	187	39934028	-	RPA0951	-	nucleoside 2-deoxyribosyltransferase
949	 65.99	0	1052203..1054128	-	641	39934029	dxs	RPA0952	-	1-deoxy-D-xylulose-5-phosphate synthase
950	 63.10	0	1054542..1054793	-	83	39934030	xseB	RPA0953	-	exodeoxyribonuclease VII small subunit
951	 65.48	0	1054877..1055806	-	309	39934031	-	RPA0954	-	histone deacetylase superfamily
952	 65.45	0	1055912..1057630	-	572	39934032	-	RPA0955	-	putative 5`-nucleotidase family protein
953	 64.36	0	1057814..1058290	+	158	39934033	-	RPA0956	-	hypothetical protein
954	 63.14	0	1058329..1059123	-	264	39934034	-	RPA0957	-	enoyl-CoA hydratase/isomerase
955	 67.56	0	1059297..1061078	-	593	39934035	-	RPA0958	-	putative acyl-CoA dehydrogenase
956	 68.96	+1	1061498..1062499	+	333	39934036	hupU	RPA0959	-	uptake hydrogenase accessory protein hupU
957	 63.79	0	1064173..1065285	+	370	39934037	hupS	RPA0962	-	hydrogenase small chain
958	 63.82	0	1065304..1067097	+	597	39934038	hupL	RPA0963	-	hydrogenase large chain
959	 59.67	-1	1067114..1067842	+	242	39934039	hupC	RPA0964	-	Ni/Fe-hydrogenase 1 B-type cytochrome subunit
960	 65.44	0	1067904..1068557	+	217	39934040	hupD	RPA0965	-	hydrogenase maturation protein hupD
961	 72.22	+2	1068571..1069164	+	197	39934041	hupE	RPA0966	-	putative membrane-bound hydrogenase component hupE
962	 67.33	0	1069185..1069487	+	100	39934042	hupF	RPA0967	-	hydrogenase expression/formation protein hupF
963	 68.16	0	1069708..1070109	+	133	39934043	hupG	RPA0968	-	putative hydrogenase expression/formation protein hupG
964	 67.01	0	1070106..1070972	+	288	39934044	hupH	RPA0969	-	hydrogenase expression/formation protein hupH
965	 69.01	+1	1070969..1071181	+	70	39934045	hupI	RPA0970	-	putative rubredoxin hupI
966	 70.10	+1	1071171..1071695	+	174	39934046	hupJ	RPA0971	-	putative hydrogenase expression/formation protein hupJ
967	 69.55	+1	1071692..1072801	+	369	39934047	hupK	RPA0972	-	putative hydrogenase expression/formation protein hupK
968	 65.20	0	1072794..1073135	+	113	39934048	hypA	RPA0973	-	hydrogenase formation/expression protein hypA
969	 63.74	0	1073135..1074091	+	318	39934049	hypB	RPA0974	-	hydrogenase expression/formation protein hypB
970	 69.96	+1	1074096..1076369	+	757	39934050	hypF	RPA0975	-	hydrogenase maturation protein hypF
971	 67.95	0	1076369..1076602	+	77	39934051	hypC	RPA0976	-	putative hypC
972	 66.93	0	1076599..1077741	+	380	39934052	hypD	RPA0977	-	hydrogenase expression/formation protein hypD
973	 69.15	+1	1077738..1078784	+	348	39934053	hypE	RPA0978	-	hydrogenase expression/formation protein hypE
974	 64.87	0	1078825..1080273	+	482	39934054	hoxA	RPA0979	-	two component sigma-54-dependent hydrogenase transcriptional regulator hoxA
975	 65.48	0	1080263..1081615	+	450	39934055	-	RPA0980	-	sensor histidine kinase
976	 65.79	0	1081721..1084108	+	795	39934056	-	RPA0981	-	sensor histidine kinase
977	 66.16	0	1084132..1084923	-	263	39934057	pcaR	RPA0982	-	transcriptional regulator PcaR
978	 65.78	0	1085284..1086642	+	452	39934058	-	RPA0983	-	phthalate dioxygenase
979	 64.89	0	1086639..1088099	+	486	39934059	glnA4	RPA0984	-	putative glutamine synthetase-like protein
980	 62.57	0	1088146..1089318	+	390	39934060	-	RPA0985	-	putative branched-chain amino acid transport system substrate-binding protein
981	 63.32	0	1089530..1090396	+	288	39934061	-	RPA0986	-	urea/short-chain amide transport system permease protein
982	 66.57	0	1090399..1091397	+	332	39934062	-	RPA0987	-	branched chain amino acid ABC transporter permease
983	 65.10	0	1091394..1092158	+	254	39934063	-	RPA0988	-	putative branched-chain amino acid ABC transporter, ATP-binding protein
984	 67.79	0	1092139..1092852	+	237	39934064	-	RPA0989	-	putative ATP-binding component of ABC transporter
985	 65.45	0	1092866..1095403	-	845	39934065	phyB5	RPA0990	-	bacteriophytochrome PhyB
986	 64.63	0	1095619..1096404	+	261	39934066	-	RPA0991	-	Crp/FNR family transcriptional regulator
987	 62.30	0	1096426..1097157	-	243	39934067	-	RPA0992	-	Crp/FNR family transcriptional regulator
988	 66.67	0	1097324..1097899	+	191	39934068	-	RPA0993	-	alpha-ribazole-5`-phosphate phosphatase CobC
989	 61.31	-1	1098342..1098677	+	111	39934069	-	RPA0994	-	hypothetical protein
990	 63.70	0	1098742..1099887	-	381	39934070	-	RPA0995	-	acyl-CoA dehydrogenase
991	 65.49	0	1100262..1101284	-	340	39934071	-	RPA0996	-	Alpha/beta hydrolase fold
992	 65.03	0	1101329..1101757	+	142	39934072	-	RPA0997	-	ArsR family transcriptional regulator
993	 67.45	0	1101771..1102151	-	126	39934073	-	RPA0998	-	rhodanese-like protein
994	 64.07	0	1102360..1102974	+	204	39934074	PA5115	RPA0999	-	hypothetical protein
995	 66.41	0	1102982..1103377	-	131	39934075	-	RPA1000	-	nitrogenase-associated protein
996	 68.19	0	1103391..1103981	-	196	39934076	-	RPA1001	-	hypothetical protein
997	 70.78	+1	1104195..1105070	+	291	39934077	modD	RPA1002	-	pyrophosphorylase ModD
998	 66.36	0	1105201..1106835	-	544	39934078	-	RPA1003	-	putative acyl-CoA synthase
999	 65.70	0	1107079..1107285	+	68	39934079	-	RPA1004	-	hypothetical protein
1000	 65.90	0	1107364..1108014	+	216	39934080	-	RPA1005	-	NUDIX hydrolase
1001	 64.18	0	1108128..1108529	+	133	39934081	-	RPA1006	-	protocatechuate 4,5-dioxygenase subunit alpha
1002	 65.27	0	1108545..1109402	+	285	39934082	mhpB	RPA1007	-	protocatechuate 4,5-dioxygenase subunit beta
1003	 65.88	0	1109469..1110359	-	296	39934083	-	RPA1008	-	AraC family transcriptional regulator
1004	 66.16	0	1110510..1111697	+	395	39934084	-	RPA1009	-	cytochrome P450
1005	 65.54	0	1111734..1113680	-	648	39934085	-	RPA1010	-	Beta-lactamase-like protein
1006	 64.37	0	1113940..1114593	+	217	39934086	-	RPA1011	-	DSBA oxidoreductase
1007	 64.44	0	1114724..1115488	+	254	39934087	-	RPA1012	-	integral membrane protein
1008	 64.86	0	1115514..1116956	-	480	39934088	fixG	RPA1013	-	nitrogen fixation protein FixG
1009	 60.54	-1	1117075..1117368	-	97	39934089	-	RPA1014	-	hypothetical protein
1010	 67.17	0	1117580..1118170	+	196	39934090	-	RPA1015	-	PadR family transcriptional regulator
1011	 66.67	0	1118259..1118792	+	177	39934091	petA	RPA1016	-	ubiquinol-cytochrome-c reductase, Rieske iron-sulfur protein
1012	 66.67	0	1119042..1119434	+	130	39934092	-	RPA1017	-	nitrogen fixation-related protein
1013	 62.69	0	1119616..1119816	-	66	39934093	-	RPA1018	-	hypothetical protein
1014	 63.45	0	1119897..1120238	+	113	39934094	-	RPA1019	-	NolR/HlyU transcriptional regulator
1015	 66.67	0	1120240..1121235	+	331	39934095	-	RPA1020	-	secretion protein HlyD
1016	 65.58	0	1121232..1124456	+	1074	39934096	-	RPA1021	-	AcrB/AcrD/AcrF family transporter
1017	 64.68	0	1124518..1125171	+	217	39934097	-	RPA1022	-	outer membrane protein
1018	 66.03	0	1125380..1125691	+	103	39934098	-	RPA1023	-	hypothetical protein
65.23	MEAN

3.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.