IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213
4813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
858	 62.81	0	957713..958801	+	362	39933938	-	RPA0861	-	cobalamin synthesis protein, P47K
859	 67.75	0	958798..959817	+	339	39933939	-	RPA0862	-	WD-40 repeat-containing G-protein
860	 66.94	0	959852..960574	+	240	39933940	-	RPA0863	-	Mg2+ transporter
861	 69.92	+1	960635..961033	+	132	39933941	-	RPA0864	-	hypothetical protein
862	 63.59	0	961340..962770	-	476	39933942	-	RPA0865	-	homospermidine synthase
863	 64.44	0	962880..963284	-	134	39933943	rnk	RPA0866	-	putative nucleoside diphosphate kinase regulator
864	 61.50	-1	963579..963965	-	128	39933944	-	RPA0867	-	endoribonuclease L-PSP
865	 72.96	+2	964063..964221	-	52	39933945	-	RPA0868	-	hypothetical protein
866	 72.28	+2	964232..964819	-	195	39933946	-	RPA0869	-	GCN5-related N-acetyltransferase
867	 65.27	0	964962..966104	-	380	39933947	-	RPA0870	-	ornithine decarboxylase
868	 66.28	0	966769..967029	-	86	39933948	-	RPA0871	-	hypothetical protein
869	 67.77	0	967238..969328	+	696	39933949	-	RPA0872	-	peptidyl-dipeptidase Dcp
870	 62.23	0	969333..969986	+	217	39933950	-	RPA0873	-	hypothetical protein
871	 67.96	0	969983..971296	+	437	39933951	-	RPA0874	-	high-affinity nickel-transporter
872	 64.55	0	971472..972509	+	345	39933952	hemH	RPA0875	-	ferrochelatase
873	 64.06	0	972666..973661	+	331	39933953	-	RPA0876	-	band 7 protein
874	 70.00	+1	973678..974127	+	149	39933954	-	RPA0877	-	hypothetical protein
875	 63.80	0	974231..975136	-	301	39933955	-	RPA0878	-	AraC family transcriptional regulator
876	 65.78	0	975442..976455	-	337	39933956	kpsF	RPA0879	-	CBS/sugar isomerase domain containing protein
877	 67.60	0	976660..978375	+	571	39933957	-	RPA0880	-	hypothetical protein
878	 66.76	0	978487..979503	+	338	39933958	-	RPA0881	-	hypothetical protein
879	 66.78	0	979493..980344	-	283	39933959	-	RPA0882	-	ABC transporter, permease
880	 67.42	0	980454..981248	-	264	39933960	-	RPA0883	-	ABC transporter, ATP-binding protein
881	 65.77	0	981450..982448	-	332	39933961	-	RPA0884	-	ABC transporter, substrate-binding protein
882	 68.50	+1	982576..982848	-	90	39933962	-	RPA0885	-	hypothetical protein
883	 65.41	0	983016..984524	+	502	39933963	-	RPA0886	-	putative diguanylate cyclase (GGDEF)
884	 64.73	0	984555..985430	-	291	39933964	exoN	RPA0887	-	UTP-glucose-1-phosphate uridylyltransferase
885	 65.71	0	985554..986600	-	348	39933965	-	RPA0888	-	alpha/beta hydrolase fold
886	 62.47	0	986719..987195	+	158	39933966	hspD	RPA0889	-	heat shock protein Hsp20
887	 72.20	+2	987337..988113	-	258	39933967	-	RPA0890	-	hypothetical protein
888	 65.04	0	988573..993300	+	1575	39933968	gltB	RPA0891	-	glutamate synthase ferredoxin subunit
889	 66.60	0	993473..994927	+	484	39933969	gltD	RPA0892	-	glutamate synthase subunit beta
890	 66.42	0	995274..995675	+	133	39933970	-	RPA0893	-	hypothetical protein
891	 66.98	0	995769..996728	-	319	39933971	-	RPA0894	-	putative transposase
892	 67.44	0	997027..997803	-	258	39933972	-	RPA0895	-	putative 3-oxoacyl-[ACP] reductase
893	 65.71	0	997944..998678	+	244	39933973	-	RPA0896	-	putative 3-oxoacyl-acyl carrier protein reductase
894	 69.73	+1	998750..1000444	-	564	39933974	-	RPA0897	-	hypothetical protein
895	 68.41	+1	1000591..1001508	-	305	39933975	dapA	RPA0898	-	dihydrodipicolinate synthase
896	 67.74	0	1002043..1003440	-	465	39933976	-	RPA0899	-	lytic murein transglycosylase
897	 68.25	0	1003627..1004259	+	210	39933977	-	RPA0900	-	Rht family  amino acid efflux protein
898	 66.54	0	1004276..1005043	-	255	39933978	-	RPA0901	-	hypothetical protein
899	 63.66	0	1005076..1005507	-	143	39933979	-	RPA0902	-	glyoxalase/bleomycin resistance protein/dioxygenase
900	 69.83	+1	1005555..1006154	+	199	39933980	-	RPA0903	-	TetR family transcriptional regulator
901	 63.74	0	1006170..1007090	-	306	39933981	-	RPA0904	-	histidinol-phosphate phosphatase, putative, inositol monophosphatase
902	 59.20	-1	1007654..1007827	-	57	39933982	-	RPA0905	-	Flp/Fap pilin component
903	 64.86	0	1007978..1008865	-	295	39933983	-	RPA0906	-	N-formylglutamate amidohydrolase
904	 60.00	-1	1009176..1009535	+	119	39933984	-	RPA0907	-	response regulator receiver (CheY-like protein)
905	 67.46	0	1009925..1010050	+	41	39933985	-	RPA0908	-	hypothetical protein
906	 66.67	0	1010498..1011097	-	199	39933986	wrbA	RPA0909	-	TrpR binding protein WrbA
907	 66.81	0	1011260..1011958	-	232	39933987	-	RPA0910	-	hypothetical protein
908	 70.78	+1	1012091..1013014	+	307	39933988	-	RPA0911	-	LysR family transcriptional regulator
909	 68.47	+1	1013029..1013862	-	277	39933989	-	RPA0912	-	hypothetical protein
910	 63.46	0	1013997..1014650	+	217	39933990	-	RPA0913	-	hypothetical protein
911	 66.35	0	1014871..1017750	-	959	39933991	-	RPA0914	-	diguanylate cyclase/phosphodiesterase
912	 65.97	0	1017873..1018871	-	332	39933992	-	RPA0915	-	putative NADPH quinone oxidoreductase
913	 59.38	-1	1018985..1019176	+	63	39933993	-	RPA0916	-	hypothetical protein
914	 67.06	0	1019597..1020106	+	169	39933994	-	RPA0917	-	AraC family transcriptional regulator
915	 61.40	-1	1020328..1020555	-	75	39933995	rpmE	RPA0918	-	50S ribosomal protein L31
916	 68.45	+1	1020753..1022657	+	634	39933996	-	RPA0919	-	ABC transporter permease/ATP-binding protein
917	 67.11	0	1022801..1023247	-	148	39933997	-	RPA0920	-	GCN5-related N-acetyltransferase
918	 66.76	0	1023394..1024419	-	341	39933998	-	RPA0921	-	hypothetical protein
919	 66.76	0	1024419..1025438	-	339	39933999	-	RPA0922	-	hypothetical protein
920	 65.94	0	1025618..1026445	+	275	39934000	-	RPA0923	-	hypothetical protein
921	 65.40	0	1026442..1027467	+	341	39934001	-	RPA0924	-	cyclopropane-fatty-acyl-phospholipid synthase
922	 63.59	0	1027750..1027944	+	64	39934002	-	RPA0925	-	hypothetical protein
923	 64.10	0	1028028..1028222	+	64	39934003	-	RPA0926	-	hypothetical protein
924	 60.00	-1	1028320..1028529	-	69	39934004	-	RPA0927	-	XRE family transcriptional regulator
925	 67.53	0	1028533..1029108	-	191	39934005	-	RPA0928	-	hypothetical protein
926	 65.14	0	1029178..1029765	+	195	39934006	-	RPA0929	-	hypothetical protein
927	 67.50	0	1029992..1030594	-	200	39934007	-	RPA0930	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
928	 66.54	0	1030591..1032129	-	512	39934008	ubiD	RPA0931	-	carboxylyase-like protein
929	 66.67	0	1032245..1032790	+	181	39934009	-	RPA0932	-	hypothetical protein
930	 66.36	0	1032794..1033771	+	325	39934010	-	RPA0933	-	peptidase U32
931	 65.91	0	1033840..1034760	+	306	39934011	-	RPA0934	-	peptidase U32
932	 62.21	0	1035248..1036549	-	433	39934012	-	RPA0935	-	hypothetical protein
933	 65.27	0	1036631..1037203	+	190	39934013	-	RPA0936	-	TetR family transcriptional regulator
934	 67.43	0	1037232..1038020	-	262	39934014	-	RPA0937	-	extragenic suppressor protein SuhB
935	 68.77	+1	1038125..1039216	-	363	39934015	-	RPA0938	-	hypothetical protein
936	 70.91	+1	1039233..1039892	-	219	39934016	-	RPA0939	-	thiamine monophosphate synthase
937	 65.31	0	1039898..1040932	-	344	39934017	-	RPA0940	-	fructose-bisphosphate aldolase
938	 58.02	-2	1040987..1041310	-	107	39934018	-	RPA0941	-	hypothetical protein
939	 62.11	0	1041307..1041591	-	94	39934019	-	RPA0942	-	hypothetical protein
940	 67.50	0	1041690..1042886	-	398	39934020	pgk	RPA0943	-	phosphoglycerate kinase
941	 63.59	0	1043108..1044115	-	335	39934021	cbbG	RPA0944	-	glyceraldehyde-3-phosphate dehydrogenase, type I
942	 67.47	0	1044331..1046316	-	661	39934022	cbbT2	RPA0945	-	transketolase
943	 69.31	+1	1046611..1046988	+	125	39934023	-	RPA0946	-	hypothetical protein
944	 68.86	+1	1046985..1047395	+	136	39934024	-	RPA0947	-	hypothetical protein
945	 67.96	0	1047902..1049140	-	412	39934025	-	RPA0948	-	putative RNA methyltransferase
946	 69.05	+1	1049187..1050611	-	474	39934026	matE2	RPA0949	-	MATE efflux family protein
947	 67.61	0	1050674..1051414	-	246	39934027	tly	RPA0950	-	hemolysin A
948	 66.31	0	1051417..1051980	-	187	39934028	-	RPA0951	-	nucleoside 2-deoxyribosyltransferase
949	 65.99	0	1052203..1054128	-	641	39934029	dxs	RPA0952	-	1-deoxy-D-xylulose-5-phosphate synthase
950	 63.10	0	1054542..1054793	-	83	39934030	xseB	RPA0953	-	exodeoxyribonuclease VII small subunit
951	 65.48	0	1054877..1055806	-	309	39934031	-	RPA0954	-	histone deacetylase superfamily
952	 65.45	0	1055912..1057630	-	572	39934032	-	RPA0955	-	putative 5`-nucleotidase family protein
953	 64.36	0	1057814..1058290	+	158	39934033	-	RPA0956	-	hypothetical protein
954	 63.14	0	1058329..1059123	-	264	39934034	-	RPA0957	-	enoyl-CoA hydratase/isomerase
955	 67.56	0	1059297..1061078	-	593	39934035	-	RPA0958	-	putative acyl-CoA dehydrogenase
956	 68.96	+1	1061498..1062499	+	333	39934036	hupU	RPA0959	-	uptake hydrogenase accessory protein hupU
957	 63.79	0	1064173..1065285	+	370	39934037	hupS	RPA0962	-	hydrogenase small chain
65.23	MEAN

3.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.