IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213
4813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
820	 65.94	0	920542..921093	+	183	39933900	-	RPA0823	-	hypothetical protein
821	 68.87	+1	921127..921897	-	256	39933901	lepB1	RPA0824	-	signal peptidase I
822	 66.88	0	921894..923321	-	475	39933902	-	RPA0825	-	peptidase U62, modulator of DNA gyrase
823	 63.06	0	923443..923664	+	73	39933903	-	RPA0826	-	hypothetical protein
824	 56.67	-2	923664..923993	+	109	39933904	-	RPA0827	-	hypothetical protein
825	 63.91	0	924075..924545	+	156	39933905	-	RPA0828	-	MarR family transcriptional regulator
826	 66.43	0	924660..925085	+	141	39933906	ohr	RPA0829	-	organic hydroperoxide resistance protein
827	 67.86	0	925367..926035	-	222	39933907	-	RPA0830	-	hypothetical protein
828	 61.54	-1	926324..927181	+	285	39933908	coxB	RPA0831	-	cytochrome-c oxidase
829	 62.05	-1	927249..928874	+	541	39933909	coxA	RPA0832	-	cytochrome-c oxidase
830	 66.67	0	928920..929885	+	321	39933910	coxE	RPA0833	-	protoheme IX farnesyltransferase
831	 65.56	0	929885..930064	+	59	39933911	CoxF	RPA0834	-	putative CoxF
832	 64.50	0	930061..930705	+	214	39933912	coxG	RPA0835	-	cytochrome C oxidase assembly protein
833	 62.92	0	930777..931631	+	284	39933913	coxC	RPA0836	-	cytochrome c oxidase, subunit III
834	 65.66	0	931794..932189	+	131	39933914	-	RPA0837	-	hypothetical protein
835	 68.78	+1	932186..932989	+	267	39933915	-	RPA0838	-	surfeit 1
836	 65.90	0	933124..934554	+	476	161610777	thrC	RPA0839	-	threonine synthase
837	 65.74	0	934551..935840	+	429	39933917	mpp	RPA0840	-	putative protease
838	 67.17	0	935893..936489	+	198	39933918	-	RPA0841	-	GCN5-related N-acetyltransferase
839	 66.51	0	936587..937240	+	217	39933919	-	RPA0842	-	hypothetical protein
840	 66.87	0	937373..937864	-	163	39933920	atpF1	RPA0843	-	H+-transporting two-sector ATPase, B/B' subunit
841	 66.13	0	937870..938427	-	185	39933921	atpF2	RPA0844	-	H+-transporting two-sector ATPase, B/B' subunit
842	 64.04	0	938485..938712	-	75	39933922	atpE	RPA0845	-	F0F1 ATP synthase subunit C
843	 59.97	-1	938761..939507	-	248	39933923	atpB	RPA0846	-	F0F1 ATP synthase subunit A
844	 60.72	-1	939577..939963	-	128	39933924	atpI	RPA0847	-	FoF1 ATP synthase, subunit I
845	 65.54	0	940266..940889	+	207	39933925	-	RPA0848	-	DSBA oxidoreductase
846	 65.81	0	940935..941519	+	194	39933926	-	RPA0849	-	hypothetical protein
847	 65.19	0	941543..942016	+	157	39933927	-	RPA0850	-	hypothetical protein
848	 63.30	0	942213..943877	-	554	39933928	-	RPA0851	-	general substrate transporter
849	 64.75	0	944214..944891	+	225	39933929	-	RPA0852	-	two-component LuxR family transcriptional regulator
850	 65.98	0	945053..948562	-	1169	39933930	-	RPA0853	-	periplasmic sensor hybrid histidine kinase
851	 63.74	0	948749..949978	-	409	39933931	hemO	RPA0854	-	5-aminolevulinate synthase
852	 63.10	0	950199..951263	-	354	39933932	-	RPA0855	-	Beta-lactamase-like
853	 65.73	0	951429..953567	-	712	39933933	-	RPA0856	-	methyl-accepting chemotaxis receptor/sensory transducer
854	 64.90	0	953782..954516	-	244	39933934	-	RPA0857	-	outer membrane protein
855	 65.20	0	955056..955805	+	249	39933935	-	RPA0858	-	ABC transporter ATP-binding protein
856	 65.29	0	955810..956682	+	290	39933936	-	RPA0859	-	hypothetical protein
857	 65.90	0	956688..957605	+	305	39933937	-	RPA0860	-	ABC transporter, periplasmic binding protein
858	 62.81	0	957713..958801	+	362	39933938	-	RPA0861	-	cobalamin synthesis protein, P47K
859	 67.75	0	958798..959817	+	339	39933939	-	RPA0862	-	WD-40 repeat-containing G-protein
860	 66.94	0	959852..960574	+	240	39933940	-	RPA0863	-	Mg2+ transporter
861	 69.92	+1	960635..961033	+	132	39933941	-	RPA0864	-	hypothetical protein
862	 63.59	0	961340..962770	-	476	39933942	-	RPA0865	-	homospermidine synthase
863	 64.44	0	962880..963284	-	134	39933943	rnk	RPA0866	-	putative nucleoside diphosphate kinase regulator
864	 61.50	-1	963579..963965	-	128	39933944	-	RPA0867	-	endoribonuclease L-PSP
865	 72.96	+2	964063..964221	-	52	39933945	-	RPA0868	-	hypothetical protein
866	 72.28	+2	964232..964819	-	195	39933946	-	RPA0869	-	GCN5-related N-acetyltransferase
867	 65.27	0	964962..966104	-	380	39933947	-	RPA0870	-	ornithine decarboxylase
868	 66.28	0	966769..967029	-	86	39933948	-	RPA0871	-	hypothetical protein
869	 67.77	0	967238..969328	+	696	39933949	-	RPA0872	-	peptidyl-dipeptidase Dcp
870	 62.23	0	969333..969986	+	217	39933950	-	RPA0873	-	hypothetical protein
871	 67.96	0	969983..971296	+	437	39933951	-	RPA0874	-	high-affinity nickel-transporter
872	 64.55	0	971472..972509	+	345	39933952	hemH	RPA0875	-	ferrochelatase
873	 64.06	0	972666..973661	+	331	39933953	-	RPA0876	-	band 7 protein
874	 70.00	+1	973678..974127	+	149	39933954	-	RPA0877	-	hypothetical protein
875	 63.80	0	974231..975136	-	301	39933955	-	RPA0878	-	AraC family transcriptional regulator
876	 65.78	0	975442..976455	-	337	39933956	kpsF	RPA0879	-	CBS/sugar isomerase domain containing protein
877	 67.60	0	976660..978375	+	571	39933957	-	RPA0880	-	hypothetical protein
878	 66.76	0	978487..979503	+	338	39933958	-	RPA0881	-	hypothetical protein
879	 66.78	0	979493..980344	-	283	39933959	-	RPA0882	-	ABC transporter, permease
880	 67.42	0	980454..981248	-	264	39933960	-	RPA0883	-	ABC transporter, ATP-binding protein
881	 65.77	0	981450..982448	-	332	39933961	-	RPA0884	-	ABC transporter, substrate-binding protein
882	 68.50	+1	982576..982848	-	90	39933962	-	RPA0885	-	hypothetical protein
883	 65.41	0	983016..984524	+	502	39933963	-	RPA0886	-	putative diguanylate cyclase (GGDEF)
884	 64.73	0	984555..985430	-	291	39933964	exoN	RPA0887	-	UTP-glucose-1-phosphate uridylyltransferase
885	 65.71	0	985554..986600	-	348	39933965	-	RPA0888	-	alpha/beta hydrolase fold
886	 62.47	0	986719..987195	+	158	39933966	hspD	RPA0889	-	heat shock protein Hsp20
887	 72.20	+2	987337..988113	-	258	39933967	-	RPA0890	-	hypothetical protein
888	 65.04	0	988573..993300	+	1575	39933968	gltB	RPA0891	-	glutamate synthase ferredoxin subunit
889	 66.60	0	993473..994927	+	484	39933969	gltD	RPA0892	-	glutamate synthase subunit beta
890	 66.42	0	995274..995675	+	133	39933970	-	RPA0893	-	hypothetical protein
891	 66.98	0	995769..996728	-	319	39933971	-	RPA0894	-	putative transposase
892	 67.44	0	997027..997803	-	258	39933972	-	RPA0895	-	putative 3-oxoacyl-[ACP] reductase
893	 65.71	0	997944..998678	+	244	39933973	-	RPA0896	-	putative 3-oxoacyl-acyl carrier protein reductase
894	 69.73	+1	998750..1000444	-	564	39933974	-	RPA0897	-	hypothetical protein
895	 68.41	+1	1000591..1001508	-	305	39933975	dapA	RPA0898	-	dihydrodipicolinate synthase
896	 67.74	0	1002043..1003440	-	465	39933976	-	RPA0899	-	lytic murein transglycosylase
897	 68.25	0	1003627..1004259	+	210	39933977	-	RPA0900	-	Rht family  amino acid efflux protein
898	 66.54	0	1004276..1005043	-	255	39933978	-	RPA0901	-	hypothetical protein
899	 63.66	0	1005076..1005507	-	143	39933979	-	RPA0902	-	glyoxalase/bleomycin resistance protein/dioxygenase
900	 69.83	+1	1005555..1006154	+	199	39933980	-	RPA0903	-	TetR family transcriptional regulator
901	 63.74	0	1006170..1007090	-	306	39933981	-	RPA0904	-	histidinol-phosphate phosphatase, putative, inositol monophosphatase
902	 59.20	-1	1007654..1007827	-	57	39933982	-	RPA0905	-	Flp/Fap pilin component
903	 64.86	0	1007978..1008865	-	295	39933983	-	RPA0906	-	N-formylglutamate amidohydrolase
904	 60.00	-1	1009176..1009535	+	119	39933984	-	RPA0907	-	response regulator receiver (CheY-like protein)
905	 67.46	0	1009925..1010050	+	41	39933985	-	RPA0908	-	hypothetical protein
906	 66.67	0	1010498..1011097	-	199	39933986	wrbA	RPA0909	-	TrpR binding protein WrbA
907	 66.81	0	1011260..1011958	-	232	39933987	-	RPA0910	-	hypothetical protein
908	 70.78	+1	1012091..1013014	+	307	39933988	-	RPA0911	-	LysR family transcriptional regulator
909	 68.47	+1	1013029..1013862	-	277	39933989	-	RPA0912	-	hypothetical protein
910	 63.46	0	1013997..1014650	+	217	39933990	-	RPA0913	-	hypothetical protein
911	 66.35	0	1014871..1017750	-	959	39933991	-	RPA0914	-	diguanylate cyclase/phosphodiesterase
912	 65.97	0	1017873..1018871	-	332	39933992	-	RPA0915	-	putative NADPH quinone oxidoreductase
913	 59.38	-1	1018985..1019176	+	63	39933993	-	RPA0916	-	hypothetical protein
914	 67.06	0	1019597..1020106	+	169	39933994	-	RPA0917	-	AraC family transcriptional regulator
915	 61.40	-1	1020328..1020555	-	75	39933995	rpmE	RPA0918	-	50S ribosomal protein L31
916	 68.45	+1	1020753..1022657	+	634	39933996	-	RPA0919	-	ABC transporter permease/ATP-binding protein
917	 67.11	0	1022801..1023247	-	148	39933997	-	RPA0920	-	GCN5-related N-acetyltransferase
918	 66.76	0	1023394..1024419	-	341	39933998	-	RPA0921	-	hypothetical protein
919	 66.76	0	1024419..1025438	-	339	39933999	-	RPA0922	-	hypothetical protein
65.23	MEAN

3.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.