IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213
4813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
787	 66.32	0	876924..877778	-	284	39933867	-	RPA0790	-	hypothetical protein
788	 65.33	0	877812..878633	-	273	39933868	exoI1	RPA0791	-	nuclease
789	 65.17	0	878657..880396	-	579	39933869	-	RPA0792	-	hypothetical protein
790	 67.70	0	880850..881716	+	288	39933870	-	RPA0793	-	peptidase C14, caspase catalytic subunit p20
791	 64.03	0	881807..882565	-	252	39933871	acaP	RPA0794	-	carbonate dehydratase
792	 63.82	0	882652..883284	-	210	39933872	-	RPA0795	-	S24 family peptidase
793	 67.68	0	883368..883958	+	196	39933873	-	RPA0796	-	hypothetical protein
794	 68.77	+1	883955..885049	+	364	39933874	uraI	RPA0797	-	dihydroorotate dehydrogenase 2
795	 63.13	0	885190..885924	-	244	39933875	-	RPA0798	-	Beta-lactamase-like
796	 69.52	+1	886068..886733	-	221	39933876	-	RPA0799	-	putative carbonic anhydrase
797	 66.97	0	886913..888235	-	440	39933877	matE1	RPA0800	-	MATE efflux family protein
798	 63.99	0	888254..888589	-	111	39933878	-	RPA0801	-	hypothetical protein
799	 66.93	0	888628..890493	-	621	39933879	-	RPA0802	-	ATP-dependent DNA ligase
800	 68.67	+1	890490..891536	-	348	39933880	-	RPA0803	-	putative mRNA 3-end processing factor
801	 68.48	+1	891595..892530	+	311	39933881	-	RPA0804	-	hypothetical protein
802	 65.41	0	892683..894032	-	449	39933882	-	RPA0805	-	outer membrane protein
803	 63.06	0	894376..895596	+	406	39933883	-	RPA0806	-	high-affinity branched-chain amino acid transport system substrate-binding protein
804	 67.14	0	895772..898489	+	905	39933884	-	RPA0807	-	ATP dependent DNA helicase
805	 70.90	+1	898734..899276	+	180	39933885	-	RPA0808	-	hypothetical protein
806	 68.75	+1	899416..900279	-	287	39933886	-	RPA0809	-	LysR family transcriptional regulator
807	 68.62	+1	900378..901298	+	306	39933887	-	RPA0810	-	DMT family permease
808	 65.92	0	901384..902730	+	448	39933888	-	RPA0811	-	putative manganese transp
809	 65.17	0	902897..903697	-	266	39933889	-	RPA0812	-	hypothetical protein
810	 67.39	0	903694..904656	-	320	39933890	-	RPA0813	-	hypothetical protein
811	 70.35	+1	904892..908287	-	1131	39933891	-	RPA0814	-	hypothetical protein
812	 60.34	-1	909116..909763	+	215	39933892	-	RPA0815	-	hypothetical protein
813	 65.94	0	909857..911647	+	596	39933893	-	RPA0816	-	putative acyl-CoA dehydrogenase
814	 66.17	0	911818..913026	+	402	39933894	-	RPA0817	-	acetyl-CoA acetyltransferase
815	 63.96	0	913151..915367	+	738	39933895	-	RPA0818	-	3-hydroxyacyl-CoA dehydrogenase
816	 49.34	-2	915791..917596	+	601	39933896	-	RPA0819	-	hypothetical protein
817	 63.56	0	917708..918319	-	203	39933897	gst2	RPA0820	-	putative glutathionine S-transferase
818	 64.73	0	918366..918932	+	188	39933898	-	RPA0821	-	MarR family transcriptional regulator
819	 66.25	0	918960..920396	+	478	39933899	gshA	RPA0822	-	glutamate--cysteine ligase
820	 65.94	0	920542..921093	+	183	39933900	-	RPA0823	-	hypothetical protein
821	 68.87	+1	921127..921897	-	256	39933901	lepB1	RPA0824	-	signal peptidase I
822	 66.88	0	921894..923321	-	475	39933902	-	RPA0825	-	peptidase U62, modulator of DNA gyrase
823	 63.06	0	923443..923664	+	73	39933903	-	RPA0826	-	hypothetical protein
824	 56.67	-2	923664..923993	+	109	39933904	-	RPA0827	-	hypothetical protein
825	 63.91	0	924075..924545	+	156	39933905	-	RPA0828	-	MarR family transcriptional regulator
826	 66.43	0	924660..925085	+	141	39933906	ohr	RPA0829	-	organic hydroperoxide resistance protein
827	 67.86	0	925367..926035	-	222	39933907	-	RPA0830	-	hypothetical protein
828	 61.54	-1	926324..927181	+	285	39933908	coxB	RPA0831	-	cytochrome-c oxidase
829	 62.05	-1	927249..928874	+	541	39933909	coxA	RPA0832	-	cytochrome-c oxidase
830	 66.67	0	928920..929885	+	321	39933910	coxE	RPA0833	-	protoheme IX farnesyltransferase
831	 65.56	0	929885..930064	+	59	39933911	CoxF	RPA0834	-	putative CoxF
832	 64.50	0	930061..930705	+	214	39933912	coxG	RPA0835	-	cytochrome C oxidase assembly protein
833	 62.92	0	930777..931631	+	284	39933913	coxC	RPA0836	-	cytochrome c oxidase, subunit III
834	 65.66	0	931794..932189	+	131	39933914	-	RPA0837	-	hypothetical protein
835	 68.78	+1	932186..932989	+	267	39933915	-	RPA0838	-	surfeit 1
836	 65.90	0	933124..934554	+	476	161610777	thrC	RPA0839	-	threonine synthase
837	 65.74	0	934551..935840	+	429	39933917	mpp	RPA0840	-	putative protease
838	 67.17	0	935893..936489	+	198	39933918	-	RPA0841	-	GCN5-related N-acetyltransferase
839	 66.51	0	936587..937240	+	217	39933919	-	RPA0842	-	hypothetical protein
840	 66.87	0	937373..937864	-	163	39933920	atpF1	RPA0843	-	H+-transporting two-sector ATPase, B/B' subunit
841	 66.13	0	937870..938427	-	185	39933921	atpF2	RPA0844	-	H+-transporting two-sector ATPase, B/B' subunit
842	 64.04	0	938485..938712	-	75	39933922	atpE	RPA0845	-	F0F1 ATP synthase subunit C
843	 59.97	-1	938761..939507	-	248	39933923	atpB	RPA0846	-	F0F1 ATP synthase subunit A
844	 60.72	-1	939577..939963	-	128	39933924	atpI	RPA0847	-	FoF1 ATP synthase, subunit I
845	 65.54	0	940266..940889	+	207	39933925	-	RPA0848	-	DSBA oxidoreductase
846	 65.81	0	940935..941519	+	194	39933926	-	RPA0849	-	hypothetical protein
847	 65.19	0	941543..942016	+	157	39933927	-	RPA0850	-	hypothetical protein
848	 63.30	0	942213..943877	-	554	39933928	-	RPA0851	-	general substrate transporter
849	 64.75	0	944214..944891	+	225	39933929	-	RPA0852	-	two-component LuxR family transcriptional regulator
850	 65.98	0	945053..948562	-	1169	39933930	-	RPA0853	-	periplasmic sensor hybrid histidine kinase
851	 63.74	0	948749..949978	-	409	39933931	hemO	RPA0854	-	5-aminolevulinate synthase
852	 63.10	0	950199..951263	-	354	39933932	-	RPA0855	-	Beta-lactamase-like
853	 65.73	0	951429..953567	-	712	39933933	-	RPA0856	-	methyl-accepting chemotaxis receptor/sensory transducer
854	 64.90	0	953782..954516	-	244	39933934	-	RPA0857	-	outer membrane protein
855	 65.20	0	955056..955805	+	249	39933935	-	RPA0858	-	ABC transporter ATP-binding protein
856	 65.29	0	955810..956682	+	290	39933936	-	RPA0859	-	hypothetical protein
857	 65.90	0	956688..957605	+	305	39933937	-	RPA0860	-	ABC transporter, periplasmic binding protein
858	 62.81	0	957713..958801	+	362	39933938	-	RPA0861	-	cobalamin synthesis protein, P47K
859	 67.75	0	958798..959817	+	339	39933939	-	RPA0862	-	WD-40 repeat-containing G-protein
860	 66.94	0	959852..960574	+	240	39933940	-	RPA0863	-	Mg2+ transporter
861	 69.92	+1	960635..961033	+	132	39933941	-	RPA0864	-	hypothetical protein
862	 63.59	0	961340..962770	-	476	39933942	-	RPA0865	-	homospermidine synthase
863	 64.44	0	962880..963284	-	134	39933943	rnk	RPA0866	-	putative nucleoside diphosphate kinase regulator
864	 61.50	-1	963579..963965	-	128	39933944	-	RPA0867	-	endoribonuclease L-PSP
865	 72.96	+2	964063..964221	-	52	39933945	-	RPA0868	-	hypothetical protein
866	 72.28	+2	964232..964819	-	195	39933946	-	RPA0869	-	GCN5-related N-acetyltransferase
867	 65.27	0	964962..966104	-	380	39933947	-	RPA0870	-	ornithine decarboxylase
868	 66.28	0	966769..967029	-	86	39933948	-	RPA0871	-	hypothetical protein
869	 67.77	0	967238..969328	+	696	39933949	-	RPA0872	-	peptidyl-dipeptidase Dcp
870	 62.23	0	969333..969986	+	217	39933950	-	RPA0873	-	hypothetical protein
871	 67.96	0	969983..971296	+	437	39933951	-	RPA0874	-	high-affinity nickel-transporter
872	 64.55	0	971472..972509	+	345	39933952	hemH	RPA0875	-	ferrochelatase
873	 64.06	0	972666..973661	+	331	39933953	-	RPA0876	-	band 7 protein
874	 70.00	+1	973678..974127	+	149	39933954	-	RPA0877	-	hypothetical protein
875	 63.80	0	974231..975136	-	301	39933955	-	RPA0878	-	AraC family transcriptional regulator
876	 65.78	0	975442..976455	-	337	39933956	kpsF	RPA0879	-	CBS/sugar isomerase domain containing protein
877	 67.60	0	976660..978375	+	571	39933957	-	RPA0880	-	hypothetical protein
878	 66.76	0	978487..979503	+	338	39933958	-	RPA0881	-	hypothetical protein
879	 66.78	0	979493..980344	-	283	39933959	-	RPA0882	-	ABC transporter, permease
880	 67.42	0	980454..981248	-	264	39933960	-	RPA0883	-	ABC transporter, ATP-binding protein
881	 65.77	0	981450..982448	-	332	39933961	-	RPA0884	-	ABC transporter, substrate-binding protein
882	 68.50	+1	982576..982848	-	90	39933962	-	RPA0885	-	hypothetical protein
883	 65.41	0	983016..984524	+	502	39933963	-	RPA0886	-	putative diguanylate cyclase (GGDEF)
884	 64.73	0	984555..985430	-	291	39933964	exoN	RPA0887	-	UTP-glucose-1-phosphate uridylyltransferase
885	 65.71	0	985554..986600	-	348	39933965	-	RPA0888	-	alpha/beta hydrolase fold
886	 62.47	0	986719..987195	+	158	39933966	hspD	RPA0889	-	heat shock protein Hsp20
65.23	MEAN

3.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.