IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213
4813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
741	 67.72	0	821440..821724	-	94	39933821	-	RPA0744	-	putative high potential iron sulfur protein (HiPIP)
742	 61.98	-1	821865..824297	-	810	39933822	-	RPA0745	-	outer membrane protein precursor
743	 67.73	0	824397..826001	-	534	39933823	-	RPA0746	-	deca-heme c-type cytochrome
744	 65.62	0	826776..827822	-	348	39933824	cysA	RPA0747	-	sulphate transport system permease protein 1
745	 64.04	0	827812..828726	-	304	39933825	cysW	RPA0748	-	sulfate ABC transporter, permease component
746	 64.76	0	828731..829567	-	278	39933826	cysT	RPA0749	-	putative sulfate ABC transporter, permease component
747	 62.63	0	829860..830849	-	329	39933827	sbp	RPA0750	-	thiosulphate-binding protein
748	 64.10	0	830974..831714	-	246	39933828	cysH	RPA0751	-	phosphoadenosine phosphosulfate reductase
749	 65.06	0	832014..832883	+	289	39933829	cysD	RPA0752	-	sulfate adenylyltransferase subunit 2
750	 68.66	+1	832905..834815	+	636	39933830	cysN	RPA0753	-	putative CysN/CysC bifunctional enzyme, ATP-sulfurylase large subunit and adenylyl sulfate kinase
751	 63.95	0	834822..836258	-	478	39933831	-	RPA0754	-	signal transduction histidine kinase
752	 68.51	+1	836321..837298	-	325	39933832	-	RPA0755	-	putative oligopeptide ABC transporter, ATP-binding component
753	 68.93	+1	837299..838711	-	470	39933833	-	RPA0756	-	putative amidase
754	 62.56	0	838708..838902	-	64	39933834	-	RPA0757	-	hypothetical protein
755	 66.57	0	838916..839974	-	352	39933835	-	RPA0758	-	putative oligopeptide ABC transporter, ATP-binding component
756	 66.34	0	839979..840884	-	301	39933836	-	RPA0759	-	putative oligopeptide ABC transporter, permease component
757	 67.61	0	840889..841842	-	317	39933837	-	RPA0760	-	putative oligopeptide ABC transporter, permease component
758	 63.90	0	842040..843701	-	553	39933838	-	RPA0761	-	oligopeptide ABC transporter, periplasmic binding protein component
759	 62.35	0	843889..845487	+	532	39933839	-	RPA0762	-	oligopeptide ABC transporter, periplasmic binding protein component
760	 68.93	+1	845640..846434	+	264	39933840	-	RPA0763	-	methyltransferase
761	 64.14	0	846490..846924	-	144	39933841	-	RPA0764	-	hypothetical protein
762	 67.26	0	846945..849308	-	787	39933842	-	RPA0765	-	putative outer membrane receptor for iron transport
763	 66.24	0	849702..850409	+	235	39933843	-	RPA0766	-	Crp/FNR family transcriptional regulator
764	 66.77	0	850515..851456	+	313	39933844	-	RPA0767	-	diguanylate cyclase
765	 65.92	0	851947..852750	+	267	39933845	-	RPA0768	-	transposase
766	 47.08	-2	853002..853823	+	273	39933846	-	RPA0769	-	hypothetical protein
767	 63.74	0	853839..854762	-	307	39933847	-	RPA0770	-	integrase catalytic subunit
768	 58.05	-2	854756..855022	-	88	39933848	-	RPA0771	-	protein commonly found in insertion elements
769	 52.21	-2	855099..856412	+	437	39933849	-	RPA0772	-	pentapeptide repeat-containing protein
770	 52.94	-2	856721..857179	-	152	39933850	-	RPA0773	-	hypothetical protein
771	 65.49	0	857784..858209	+	141	39933851	-	RPA0774	-	hypothetical protein
772	 63.16	0	858557..859069	+	170	39933852	-	RPA0775	-	hypothetical protein
773	 70.18	+1	859102..860694	-	530	39933853	-	RPA0776	-	gamma-glutamyltranspeptidase precursor
774	 65.16	0	860813..863527	-	904	39933854	-	RPA0777	-	diguanylate cyclase/phosphodiesterase
775	 64.68	0	863776..864177	-	133	39933855	-	RPA0778	-	hypothetical protein
776	 67.69	0	864609..864803	+	64	39933856	-	RPA0779	-	hypothetical protein
777	 64.85	0	864804..866069	-	421	39933857	-	RPA0780	-	acyl-CoA dehydrogenase
778	 64.67	0	866150..866500	-	116	39933858	-	RPA0781	-	putative cytochrome c552 precursor
779	 65.29	0	866503..866937	-	144	39933859	-	RPA0782	-	hypothetical protein
780	 64.85	0	867126..868943	-	605	39933860	-	RPA0783	-	putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
781	 66.79	0	869122..869964	+	280	39933861	-	RPA0784	-	short-chain dehydrogenase/reductase SDR
782	 66.23	0	870091..871470	-	459	39933862	-	RPA0785	-	cytochrome P450
783	 68.75	+1	871591..872985	-	464	39933863	-	RPA0786	-	putative adenylate/guanylate cyclase
784	 67.90	0	873042..874016	+	324	39933864	-	RPA0787	-	heat shock protein HtpX
785	 69.42	+1	874269..875684	+	471	39933865	-	RPA0788	-	major facilitator superfamily drug efflux transporter
786	 68.35	0	875681..876868	-	395	39933866	-	RPA0789	-	putative serine-glyoxylate aminotransferase
787	 66.32	0	876924..877778	-	284	39933867	-	RPA0790	-	hypothetical protein
788	 65.33	0	877812..878633	-	273	39933868	exoI1	RPA0791	-	nuclease
789	 65.17	0	878657..880396	-	579	39933869	-	RPA0792	-	hypothetical protein
790	 67.70	0	880850..881716	+	288	39933870	-	RPA0793	-	peptidase C14, caspase catalytic subunit p20
791	 64.03	0	881807..882565	-	252	39933871	acaP	RPA0794	-	carbonate dehydratase
792	 63.82	0	882652..883284	-	210	39933872	-	RPA0795	-	S24 family peptidase
793	 67.68	0	883368..883958	+	196	39933873	-	RPA0796	-	hypothetical protein
794	 68.77	+1	883955..885049	+	364	39933874	uraI	RPA0797	-	dihydroorotate dehydrogenase 2
795	 63.13	0	885190..885924	-	244	39933875	-	RPA0798	-	Beta-lactamase-like
796	 69.52	+1	886068..886733	-	221	39933876	-	RPA0799	-	putative carbonic anhydrase
797	 66.97	0	886913..888235	-	440	39933877	matE1	RPA0800	-	MATE efflux family protein
798	 63.99	0	888254..888589	-	111	39933878	-	RPA0801	-	hypothetical protein
799	 66.93	0	888628..890493	-	621	39933879	-	RPA0802	-	ATP-dependent DNA ligase
800	 68.67	+1	890490..891536	-	348	39933880	-	RPA0803	-	putative mRNA 3-end processing factor
801	 68.48	+1	891595..892530	+	311	39933881	-	RPA0804	-	hypothetical protein
802	 65.41	0	892683..894032	-	449	39933882	-	RPA0805	-	outer membrane protein
803	 63.06	0	894376..895596	+	406	39933883	-	RPA0806	-	high-affinity branched-chain amino acid transport system substrate-binding protein
804	 67.14	0	895772..898489	+	905	39933884	-	RPA0807	-	ATP dependent DNA helicase
805	 70.90	+1	898734..899276	+	180	39933885	-	RPA0808	-	hypothetical protein
806	 68.75	+1	899416..900279	-	287	39933886	-	RPA0809	-	LysR family transcriptional regulator
807	 68.62	+1	900378..901298	+	306	39933887	-	RPA0810	-	DMT family permease
808	 65.92	0	901384..902730	+	448	39933888	-	RPA0811	-	putative manganese transp
809	 65.17	0	902897..903697	-	266	39933889	-	RPA0812	-	hypothetical protein
810	 67.39	0	903694..904656	-	320	39933890	-	RPA0813	-	hypothetical protein
811	 70.35	+1	904892..908287	-	1131	39933891	-	RPA0814	-	hypothetical protein
812	 60.34	-1	909116..909763	+	215	39933892	-	RPA0815	-	hypothetical protein
813	 65.94	0	909857..911647	+	596	39933893	-	RPA0816	-	putative acyl-CoA dehydrogenase
814	 66.17	0	911818..913026	+	402	39933894	-	RPA0817	-	acetyl-CoA acetyltransferase
815	 63.96	0	913151..915367	+	738	39933895	-	RPA0818	-	3-hydroxyacyl-CoA dehydrogenase
816	 49.34	-2	915791..917596	+	601	39933896	-	RPA0819	-	hypothetical protein
817	 63.56	0	917708..918319	-	203	39933897	gst2	RPA0820	-	putative glutathionine S-transferase
818	 64.73	0	918366..918932	+	188	39933898	-	RPA0821	-	MarR family transcriptional regulator
819	 66.25	0	918960..920396	+	478	39933899	gshA	RPA0822	-	glutamate--cysteine ligase
820	 65.94	0	920542..921093	+	183	39933900	-	RPA0823	-	hypothetical protein
821	 68.87	+1	921127..921897	-	256	39933901	lepB1	RPA0824	-	signal peptidase I
822	 66.88	0	921894..923321	-	475	39933902	-	RPA0825	-	peptidase U62, modulator of DNA gyrase
823	 63.06	0	923443..923664	+	73	39933903	-	RPA0826	-	hypothetical protein
824	 56.67	-2	923664..923993	+	109	39933904	-	RPA0827	-	hypothetical protein
825	 63.91	0	924075..924545	+	156	39933905	-	RPA0828	-	MarR family transcriptional regulator
826	 66.43	0	924660..925085	+	141	39933906	ohr	RPA0829	-	organic hydroperoxide resistance protein
827	 67.86	0	925367..926035	-	222	39933907	-	RPA0830	-	hypothetical protein
828	 61.54	-1	926324..927181	+	285	39933908	coxB	RPA0831	-	cytochrome-c oxidase
829	 62.05	-1	927249..928874	+	541	39933909	coxA	RPA0832	-	cytochrome-c oxidase
830	 66.67	0	928920..929885	+	321	39933910	coxE	RPA0833	-	protoheme IX farnesyltransferase
831	 65.56	0	929885..930064	+	59	39933911	CoxF	RPA0834	-	putative CoxF
832	 64.50	0	930061..930705	+	214	39933912	coxG	RPA0835	-	cytochrome C oxidase assembly protein
833	 62.92	0	930777..931631	+	284	39933913	coxC	RPA0836	-	cytochrome c oxidase, subunit III
834	 65.66	0	931794..932189	+	131	39933914	-	RPA0837	-	hypothetical protein
835	 68.78	+1	932186..932989	+	267	39933915	-	RPA0838	-	surfeit 1
836	 65.90	0	933124..934554	+	476	161610777	thrC	RPA0839	-	threonine synthase
837	 65.74	0	934551..935840	+	429	39933917	mpp	RPA0840	-	putative protease
838	 67.17	0	935893..936489	+	198	39933918	-	RPA0841	-	GCN5-related N-acetyltransferase
839	 66.51	0	936587..937240	+	217	39933919	-	RPA0842	-	hypothetical protein
840	 66.87	0	937373..937864	-	163	39933920	atpF1	RPA0843	-	H+-transporting two-sector ATPase, B/B' subunit
65.23	MEAN

3.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.