version 1.0
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213 4813 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 601 64.83 0 670503..671756 + 417 39933681 lysC RPA0604 - aspartate kinase 602 66.83 0 671957..674359 + 800 39933682 ptsP RPA0605 - PTSINtr with GAF domain, PtsP 603 65.65 0 674416..675501 + 361 39933683 prfA RPA0606 - peptide chain release factor 1 604 65.29 0 675498..676367 + 289 39933684 hemK RPA0607 - modification methylase, HemK family 605 68.10 0 676819..677514 + 231 39933685 - RPA0608 - hypothetical protein 606 68.72 +1 677617..678396 - 259 39933686 - RPA0609 - methyltransferase type 11 607 63.67 0 678565..679332 + 255 39933687 - RPA0610 - hydroxyacylglutathione hydrolase 608 70.32 +1 679329..679766 + 145 39933688 - RPA0611 - hypothetical protein 609 67.63 0 679887..680825 - 312 39933689 - RPA0612 - PfkB 610 67.52 0 680822..681754 - 310 39933690 - RPA0613 - NUDIX hydrolase 611 64.66 0 681759..682256 - 165 39933691 - RPA0614 - histidine triad (HIT) protein 612 67.95 0 682649..684520 + 623 39933692 dnaX RPA0615 - DNA polymerase III subunits gamma and tau 613 64.80 0 684542..684862 + 106 39933693 - RPA0616 - hypothetical protein 614 63.85 0 684958..685560 + 200 39933694 recR RPA0617 - recombination protein RecR 615 66.90 0 685580..686008 + 142 39933695 - RPA0618 - hypothetical protein 616 67.21 0 686049..687347 - 432 39933696 ampG RPA0619 - major facilitator transporter 617 66.02 0 687496..688728 - 410 39933697 - RPA0620 - hypothetical protein 618 60.98 -1 688848..689375 + 175 39933698 def RPA0621 - peptide deformylase 619 67.74 0 689454..690386 + 310 39933699 fmt RPA0622 - methionyl-tRNA formyltransferase 620 67.47 0 690564..691310 + 248 39933700 truA RPA0623 - tRNA pseudouridine synthase A 621 65.38 0 691642..692805 - 387 39933701 dapE RPA0624 - succinyl-diaminopimelate desuccinylase 622 64.77 0 692805..693278 - 157 39933702 - RPA0625 - hypothetical protein 623 67.02 0 693297..694142 - 281 39933703 dapD RPA0626 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 624 64.67 0 694327..695028 - 233 39933704 - RPA0627 - haloacid dehalogenase superfamily hydrolase 625 67.38 0 695025..696146 - 373 39933705 - RPA0628 - hypothetical protein 626 64.66 0 696146..697042 - 298 39933706 argB RPA0629 - acetylglutamate kinase 627 70.73 +1 697167..697535 - 122 39933707 - RPA0630 - hypothetical protein 628 67.43 0 697535..698185 - 216 39933708 - RPA0631 - GTPase EngB 629 63.46 0 698337..700205 - 622 39933709 - RPA0632 - putative inner membrane protein translocase component YidC 630 66.67 0 700222..700563 - 113 39933710 rnpA RPA0633 - ribonuclease p protein component (protein c5) 631 68.15 0 700587..700721 - 44 39933711 rpmH RPA0634 - 50S ribosomal protein L34 632 65.58 0 701052..702530 + 492 39933712 - RPA0635 - sensor histidine kinase 633 64.71 0 702970..703479 - 169 39933713 - RPA0636 - hypothetical protein 634 68.32 0 703506..704834 - 442 39933714 - RPA0637 - hypothetical protein 635 64.84 0 704911..707313 - 800 39933715 - RPA0638 - hypothetical protein 636 63.95 0 707816..708514 + 232 39933716 sigE RPA0639 - RNA polymerase sigma factor 637 65.09 0 708657..709481 + 274 39933717 fliC RPA0640 - putative flagellin 638 61.71 -1 709543..711258 + 571 39933718 fliD RPA0641 - flagellar hook-associated protein 2 (FliD, filament cap protein) 639 67.43 0 711258..711650 + 130 39933719 - RPA0642 - hypothetical protein 640 66.16 0 711650..712045 + 131 39933720 - RPA0643 - hypothetical protein 641 62.78 0 712294..713091 + 265 39933721 flgD RPA0644 - basal-body rod modification protein flgD 642 61.61 -1 713111..714376 + 421 39933722 flgE RPA0645 - flagellar hook protein FlgE 643 67.83 0 714382..714639 + 85 39933723 - RPA0646 - hypothetical protein 644 66.45 0 714655..715116 + 153 39933724 - RPA0647 - hypothetical protein 645 64.12 0 715138..716901 + 587 39933725 flgK1 RPA0648 - flagellar hook-associated protein 1 (HAP1, FlgK protein) 646 64.36 0 716917..717828 + 303 39933726 flgL RPA0649 - flagellar hook-associated protein FlgL 647 66.92 0 717848..718624 - 258 39933727 badK RPA0650 - cyclohex-1-ene-1-carboxyl-CoA hydratase 648 66.18 0 718652..720295 - 547 39933728 aliA RPA0651 - cyclohexanecarboxylate-CoA ligase 649 67.71 0 720352..721503 - 383 39933729 aliB RPA0652 - cyclohexanecarboxyl-CoA dehydrogenase 650 62.84 0 721568..722350 - 260 39933730 badI RPA0653 - 2-ketocyclohexanecarboxyl-CoA hydrolase 651 68.23 0 722381..723148 - 255 39933731 badH RPA0654 - 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase 652 61.74 -1 723271..723798 + 175 39933732 badR RPA0655 - benzoate anaerobic degradation transcription regulator BadR 653 67.45 0 723872..724891 + 339 39933733 badC RPA0656 - putative alcohol dehydrogenase 654 62.95 0 725062..726246 + 394 39933734 badD RPA0657 - benzoyl-CoA reductase subunit 655 60.49 -1 726243..727553 + 436 39933735 badE RPA0658 - benzoyl-CoA reductase subunit 656 65.22 0 727565..728878 + 437 39933736 badF RPA0659 - benzoyl-CoA reductase subunit 657 65.83 0 728971..729804 + 277 39933737 badG RPA0660 - benzoyl-CoA reductase subunit 658 66.35 0 729921..731495 + 524 39933738 badA RPA0661 - benzoate-CoA ligase 659 65.04 0 731512..731757 + 81 39933739 badB RPA0662 - ferredoxin 660 63.48 0 731806..732276 - 156 39933740 badM RPA0663 - putative transcriptional regulator, badM 661 60.62 -1 732331..732810 - 159 39933741 badL RPA0664 - acetyltransferase 662 64.87 0 732909..733631 - 240 39933742 hbaH RPA0665 - putative ABC transporter subunit, ATP-binding component 663 67.39 0 733628..735415 - 595 39933743 hbaG RPA0666 - ABC transporter ATP-binding protein 664 63.07 0 735418..736278 - 286 39933744 hbaF RPA0667 - inner-membrane translocator 665 64.80 0 736364..737542 - 392 39933745 hbaE RPA0668 - putative ABC transporter subunit, substrate-binding component 666 64.32 0 737719..739338 - 539 39933746 hbaA RPA0669 - 4-hydroxybenzoate-CoA ligase 667 65.45 0 739505..739996 + 163 39933747 hbaB RPA0670 - 4-hydroxybenzoyl-CoA reductase, first of three subunits 668 65.42 0 739993..742326 + 777 39933748 hbaC RPA0671 - 4-hydroxybenzoyl-CoA reductase,second of three subunits 669 68.39 0 742323..743306 + 327 39933749 hbaD RPA0672 - 4-hydroxybenzoyl-CoA reductase, third of three subunits 670 65.15 0 743331..744056 - 241 39933750 hbaR RPA0673 - hydroxybenzoate anaerobic degradation regulatory protein HbaR 671 66.94 0 744248..745360 + 370 39933751 - RPA0674 - alcohol dehydrogenase 672 65.94 0 745396..746217 + 273 39933752 - RPA0675 - alpha/beta fold family hydrolase 673 64.78 0 746346..748040 + 564 39933753 - RPA0676 - enoyl-CoA hydratase 674 63.29 0 748211..749662 + 483 39933754 - RPA0677 - hypothetical protein 675 64.19 0 749989..752973 + 994 161610778 gltA RPA0678 - trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein 676 64.80 0 752997..755030 - 677 39933756 - RPA0679 - hypothetical protein 677 65.86 0 755097..755714 - 205 39933757 - RPA0680 - TetR family transcriptional regulator 678 64.73 0 755856..756890 + 344 39933758 - RPA0681 - membrane permeases, cation efflux pump 679 63.54 0 756887..759601 + 904 39933759 - RPA0682 - ABC transporter ATP-binding protein 680 60.32 -1 759598..760731 + 377 39933760 - RPA0683 - ABC transporter permease 681 59.44 -1 760739..760918 - 59 39933761 - RPA0684 - hypothetical protein 682 67.24 0 761061..761936 + 291 39933762 - RPA0685 - IclR family transcriptional regulator 683 66.56 0 762097..763071 + 324 39933763 - RPA0686 - hypothetical protein 684 66.36 0 763121..763768 - 215 39933764 - RPA0687 - hypothetical protein 685 69.74 +1 763749..764333 - 194 39933765 phnN RPA0688 - phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN 686 67.99 0 764330..765466 - 378 39933766 phnM1 RPA0689 - phosphonate utilization (C-P lyase) component 687 68.23 0 765505..766209 - 234 39933767 phnL RPA0690 - phosphonate ABC transporter ATP-binding protein 688 67.28 0 766215..767033 - 272 39933768 phnK RPA0691 - phosphonates transport ATP-binding protein 689 64.28 0 767026..767904 - 292 39933769 phnJ RPA0692 - phosphonate metabolism PhnJ 690 66.67 0 767901..768998 - 365 39933770 phnI RPA0693 - phosphonate metabolism 691 67.00 0 769002..769604 - 200 39933771 phnH RPA0694 - carbon-phosphorus lyase complex subunit 692 69.20 +1 769607..770080 - 157 39933772 phnG RPA0695 - phosphonate metabolism PhnG 693 70.10 +1 770192..770920 + 242 39933773 - RPA0696 - GntR family transcriptional regulator 694 64.13 0 771245..772111 - 288 39933774 phnE1 RPA0697 - phosphonate ABC transporter permease 695 63.83 0 772108..772989 - 293 39933775 phnE2 RPA0698 - phosphonate ABC transporter permease 696 62.05 -1 773058..773966 - 302 39933776 phnD RPA0699 - phosphonate ABC transporter periplasmic phosphonate-binding protein 697 67.16 0 774076..774888 - 270 39933777 phnC RPA0700 - phosphonate ABC transporter ATP-binding 698 64.44 0 775029..775748 + 239 39933778 - RPA0701 - putative acetyltransferase (virginiamycin, streptogramin A, chloramphenicol) 699 68.17 0 775745..776938 + 397 39933779 phnM2 RPA0702 - phosphonate ABC transporter permease 700 65.82 0 776961..777665 + 234 39933780 - RPA0703 - hypothetical protein 65.23 MEAN 3.17 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0