version 1.0
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213 4813 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3655 56.74 -2 4146950..4147483 - 177 39936736 - RPA3674 - hypothetical protein 3656 59.39 -1 4148391..4148555 + 54 39936737 - RPA3675 - Flp/Fap pilin component 3657 63.81 0 4148883..4149407 + 174 39936738 - RPA3676 - peptidase A24A, prepilin type IV 3658 66.49 0 4149514..4150095 + 193 39936739 - RPA3677 - hypothetical protein 3659 64.31 0 4150110..4151552 + 480 39936740 - RPA3678 - type II and III secretion system protein 3660 65.16 0 4151572..4152300 + 242 39936741 - RPA3679 - pilus assembly protein cpaD 3661 65.17 0 4152297..4153568 + 423 39936742 - RPA3680 - pilus assembly protein cpaE 3662 63.05 0 4153661..4155043 + 460 39936743 - RPA3681 - type II secretion system protein E 3663 60.72 -1 4155056..4156030 + 324 39936744 - RPA3682 - type II secretion system protein 3664 61.64 -1 4156039..4157013 + 324 39936745 - RPA3683 - type II secretion system protein 3665 67.28 0 4157037..4157846 - 269 39936746 - RPA3684 - TPR repeat-containing protein 3666 68.11 0 4157949..4159331 + 460 39936747 - RPA3685 - leucyl aminopeptidase 3667 67.61 0 4159324..4160169 + 281 39936748 - RPA3686 - NLP/P60 3668 66.67 0 4160153..4160791 - 212 39936749 - RPA3687 - nucleoside diphosphate pyrophosphatase 3669 64.35 0 4160799..4162436 - 545 39936750 - RPA3688 - peptide ABC transporter, ATP-binding protein 3670 62.17 0 4162442..4163620 - 392 39936751 - RPA3689 - binding-protein-dependent transport systems inner membrane component 3671 61.62 -1 4163620..4164729 - 369 39936752 - RPA3690 - binding-protein-dependent transport systems inner membrane component 3672 63.83 0 4164731..4166596 - 621 39936753 - RPA3691 - extracellular solute-binding protein, family 5 3673 62.63 0 4166611..4168470 - 619 39936754 - RPA3692 - putative peptide ABC transporter, periplasmic peptide-binding protein 3674 61.44 -1 4168719..4169273 - 184 39936755 - RPA3693 - putative cytochrome c 3675 70.19 +1 4169473..4170210 + 245 39936756 kdsB RPA3694 - 3-deoxy-manno-octulosonate cytidylyltransferase 3676 64.06 0 4170282..4171124 + 280 39936757 - RPA3695 - prephenate dehydratase 3677 66.83 0 4171164..4171790 - 208 39936758 - RPA3696 - TetR family transcriptional regulator 3678 67.35 0 4171914..4173092 + 392 39936759 emrA RPA3697 - putative multidrug resistance protein 3679 64.91 0 4173089..4174621 + 510 39936760 emrB2 RPA3698 - MFS family drug efflux pump 3680 65.57 0 4174638..4175366 + 242 39936761 - RPA3699 - iron-chelator utilization protein 3681 65.68 0 4175434..4176450 - 338 39936762 - RPA3700 - luciferase-like 3682 66.44 0 4176861..4177748 + 295 39936763 metF RPA3701 - 5,10-methylenetetrahydrofolate reductase 3683 66.25 0 4177761..4181642 + 1293 39936764 metH RPA3702 - B12-dependent methionine synthase 3684 65.96 0 4181818..4182099 + 93 39936765 - RPA3703 - hypothetical protein 3685 57.64 -2 4182776..4183063 + 95 39936766 - RPA3704 - excinuclease ABC subunit C 3686 68.00 0 4183381..4184883 - 500 39936767 glpK RPA3705 - glycerol kinase 3687 62.05 -1 4185092..4185676 + 194 39936768 nasT RPA3706 - putative two-component response regulator:antitermination factor NasT 3688 70.11 +1 4185673..4186833 + 386 39936769 - RPA3707 - nitrate transporter component, nrtA 3689 67.57 0 4186852..4187292 + 146 39936770 - RPA3708 - globin-like protein 3690 69.95 +1 4187646..4188071 + 141 39936771 - RPA3709 - hemoprotein 3691 66.78 0 4188114..4189886 + 590 39936772 nirA RPA3710 - ferredoxin-nitrite reductase 3692 67.84 0 4189883..4191502 + 539 39936773 - RPA3711 - sulfite reductase 3693 66.14 0 4192563..4193705 - 380 39936774 pimD RPA3713 - pimeloyl-CoA dehydrogenase (small subunit) 3694 62.30 0 4193874..4195064 - 396 39936775 pimC RPA3714 - pimeloyl-CoA dehydrogenase (large subunit) 3695 68.10 0 4195279..4196466 - 395 39936776 pimB RPA3715 - acetyl-CoA acetyltransferase 3696 65.28 0 4196498..4198156 - 552 39936777 pimA RPA3716 - AMP-dependent synthetase and ligase 3697 67.05 0 4198335..4200434 - 699 39936778 pimF RPA3717 - enoyl-CoA hydratase 3698 62.17 0 4200567..4201433 + 288 39936779 - RPA3718 - IclR family transcriptional regulator 3699 62.55 0 4201464..4202264 + 266 39936780 ilvG RPA3719 - putative high-affinity branched-chain amino acid transport system ATP-binding protein 3700 64.57 0 4202261..4202974 + 237 39936781 ilvF RPA3720 - putative branched-chain amino acid transport system ATP-binding protein 3701 64.51 0 4202985..4203863 + 292 39936782 - RPA3721 - ABC transporter permease 3702 65.59 0 4203866..4204885 + 339 39936783 ilvM RPA3722 - putative branched-chain amino acid transport system permease protein 3703 66.67 0 4205084..4206319 + 411 39936784 - RPA3723 - leucine/isoleucine/valine-binding protein precursor 3704 60.75 -1 4206500..4207732 + 410 39936785 ilvK RPA3724 - high-affinity leucine-isoleucine-valine transport system; periplasmic binding protein 3705 59.92 -1 4208080..4209309 + 409 39936786 ilvJ RPA3725 - leucine/isoleucine/valine-binding protein precursor 3706 61.28 -1 4209434..4209934 - 166 39936787 - RPA3726 - hypothetical protein 3707 67.63 0 4210179..4211219 + 346 39936788 - RPA3727 - CorA metal Ion (Mg2+/Co2+) transporter (MIT) family protein 3708 68.06 0 4211408..4213420 + 670 39936789 - RPA3728 - hypothetical protein 3709 68.63 +1 4213681..4214853 - 390 39936790 - RPA3729 - peptidase M20D, amidohydrolase 3710 67.96 0 4214978..4216597 + 539 39936791 - RPA3730 - GMC-type oxidoreductase 3711 68.33 0 4216597..4217499 + 300 39936792 - RPA3731 - alpha/beta fold hydrolase 3712 64.80 0 4217524..4218915 - 463 39936793 argD1 RPA3732 - aminotransferase class-III 3713 64.68 0 4219247..4221859 - 870 39936794 - RPA3733 - hypothetical protein 3714 64.50 0 4222189..4223109 + 306 39936795 ispH RPA3734 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3715 63.82 0 4223149..4224309 + 386 39936796 - RPA3735 - radical SAM family protein 3716 63.68 0 4224384..4225388 - 334 39936797 pstS2 RPA3736 - putative phosphate transport system substrate-binding protein 3717 64.74 0 4225422..4226666 - 414 39936798 - RPA3737 - putative phosphonoacetate hydrolase 3718 63.86 0 4226824..4227714 + 296 39936799 - RPA3738 - LysR family transcriptional regulator 3719 67.47 0 4227805..4228548 - 247 39936800 - RPA3739 - hypothetical protein 3720 65.24 0 4228545..4230506 - 653 39936801 sqhC RPA3740 - squalene cyclase 3721 69.69 +1 4230540..4231796 - 418 39936802 - RPA3741 - amine oxidase 3722 66.67 0 4231796..4232635 - 279 39936803 - RPA3742 - squalene/phytoene synthase 3723 64.73 0 4232632..4233510 - 292 39936804 - RPA3743 - squalene/phytoene synthase 3724 61.25 -1 4233715..4233954 - 79 39936805 - RPA3744 - hypothetical protein 3725 66.87 0 4234344..4234847 + 167 39936806 - RPA3745 - hypothetical protein 3726 65.36 0 4234942..4237311 - 789 39936807 - RPA3746 - RND superfamily transporter 3727 72.53 +2 4237519..4238286 - 255 39936808 eutC RPA3747 - ethanolamine ammonia-lyase small subunit 3728 61.68 -1 4238294..4239877 - 527 39936809 - RPA3748 - radical SAM family protein 3729 65.65 0 4240105..4241487 - 460 39936810 eutB RPA3749 - ethanolamine ammonia lyase large subunit 3730 66.73 0 4241549..4243252 - 567 39936811 - RPA3750 - methyl-accepting chemotaxis sensory transducer 3731 61.84 -1 4243306..4243761 - 151 39936812 - RPA3751 - hypothetical protein 3732 67.80 0 4243965..4244843 - 292 39936813 - RPA3752 - transglutaminase-like domain-containing protein 3733 69.54 +1 4244840..4247341 - 833 39936814 - RPA3753 - hypothetical protein 3734 65.84 0 4247367..4250762 - 1131 39936815 - RPA3754 - transglutaminase-like domain-containing protein 3735 63.32 0 4251014..4251790 - 258 39936816 hpcH RPA3755 - HpcH/HpaI aldolase 3736 67.40 0 4251974..4253059 - 361 39936817 - RPA3756 - malate dehydrogenase-like protein 3737 67.96 0 4253100..4253639 - 179 39936818 - RPA3757 - MarR family transcriptional regulator 3738 65.30 0 4253885..4254691 + 268 39936819 hpcG RPA3758 - 2-oxo-hepta-3-ene-1,7-dioate hydratase 3739 64.16 0 4254712..4255110 + 132 39936820 hpcD RPA3759 - putative 5-carboxymethyl-2-hydroxymuconate isomerase 3740 66.67 0 4255103..4256644 + 513 39936821 hpcC RPA3760 - 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase 3741 64.52 0 4256841..4257818 + 325 39936822 - RPA3761 - putative catechol 2,3-dioxygenase 3742 66.09 0 4257949..4258821 + 290 39936823 - RPA3762 - putative 2-oxo-3-ene-1,7-dioic acid hydratase 3743 67.96 0 4258850..4260475 + 541 39936824 ilvB RPA3763 - hypothetical protein 3744 65.93 0 4260666..4261754 - 362 39936825 - RPA3764 - phenylacetate-CoA oxygenase/reductase, PaaK subunit 3745 68.25 0 4261763..4262266 - 167 39936826 paaD RPA3765 - phenylacetate-CoA oxygenase, PaaJ subunit 3746 65.12 0 4262260..4263036 - 258 39936827 paaC RPA3766 - phenylacetate-CoA oxygenase, PaaI subunit 3747 66.67 0 4263153..4263440 - 95 39936828 paaB RPA3767 - phenylacetate-CoA oxygenase subunit PaaB 3748 65.85 0 4263613..4264596 - 327 39936829 paaA RPA3768 - phenylacetate-CoA oxygenase subunit PaaA 3749 65.79 0 4264719..4265399 + 226 39936830 - RPA3769 - TetR family transcriptional regulator 3750 61.11 -1 4265634..4266137 - 167 39936831 - RPA3770 - phasin 2 3751 65.73 0 4266349..4266669 - 106 39936832 - RPA3771 - hypothetical protein 3752 68.31 0 4266718..4267509 - 263 39936833 - RPA3772 - hypothetical protein 3753 57.65 -2 4267528..4267782 - 84 39936834 - RPA3773 - hypothetical protein 3754 69.30 +1 4267873..4269126 - 417 39936835 - RPA3774 - D-amino-acid dehydrogenase 65.23 MEAN 3.17 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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