version 1.0
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213 4813 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3590 63.39 0 4070637..4072286 - 549 39936671 - RPA3609 - putative ABC transporter ATP-binding protein 3591 65.17 0 4072527..4072727 + 66 39936672 - RPA3610 - hypothetical protein 3592 70.62 +1 4072807..4073691 - 294 39936673 - RPA3611 - ErfK/YbiS/YcfS/YnhG 3593 73.53 +2 4074440..4075474 + 344 39936674 - RPA3612 - hypothetical protein 3594 68.76 +1 4075487..4076347 - 286 39936675 - RPA3613 - putative thiosulfate sulfurtransferase 3595 63.55 0 4076464..4076880 - 138 39936676 - RPA3614 - rhodanese-like protein 3596 61.31 -1 4077026..4078201 - 391 39936677 - RPA3615 - hypothetical protein 3597 65.12 0 4078368..4080302 + 644 39936678 - RPA3616 - diguanylate cyclase 3598 63.92 0 4080472..4080726 + 84 39936679 - RPA3617 - hypothetical protein 3599 62.04 -1 4080841..4081683 + 280 39936680 - RPA3618 - ATPase 3600 65.71 0 4082101..4083144 + 347 39936681 vanA RPA3619 - putative vanillate O-demethylase oxygenase, iron-sulfur subunit 3601 68.12 0 4083148..4083903 + 251 39936682 vanR RPA3620 - GntR family transcriptional regulator 3602 67.67 0 4083934..4084926 + 330 39936683 vanB RPA3621 - putative vanillate O-demethylase oxidoreductase 3603 65.26 0 4085029..4085313 - 94 39936684 - RPA3622 - hypothetical protein 3604 62.81 0 4085453..4086049 - 198 39936685 - RPA3623 - GCN5-related N-acetyltransferase 3605 66.45 0 4086198..4087127 - 309 39936686 - RPA3624 - gluconolactonase precursor 3606 68.24 0 4087553..4088125 + 190 39936687 - RPA3625 - excinuclease ABC subunit C 3607 62.35 0 4088910..4089164 - 84 39936688 - RPA3626 - hypothetical protein 3608 59.12 -1 4089161..4089637 - 158 39936689 - RPA3627 - putative glutathione peroxidase 3609 69.67 +1 4089656..4091053 - 465 39936690 - RPA3628 - amidase 3610 63.18 0 4091125..4091382 - 85 39936691 - RPA3629 - hypothetical protein 3611 68.48 +1 4091519..4092508 + 329 39936692 - RPA3630 - proline iminopeptidase 3612 68.86 +1 4092518..4093291 - 257 39936693 - RPA3631 - putative glucose dehydrogenase 3613 66.25 0 4093389..4093871 + 160 39936694 - RPA3632 - MarR family transcriptional regulator 3614 65.48 0 4093891..4094565 + 224 39936695 - RPA3633 - hypothetical protein 3615 65.71 0 4094709..4097633 + 974 39936696 tal RPA3634 - bifunctional transaldolase/phosoglucose isomerase 3616 65.80 0 4097820..4098860 + 346 39936697 gnd RPA3635 - 6-phosphogluconate dehydrogenase-like protein 3617 64.29 0 4098857..4100371 + 504 39936698 zwf RPA3636 - glucose-6-phosphate 1-dehydrogenase 3618 68.56 +1 4100374..4101111 + 245 39936699 pgl RPA3637 - 6-phosphogluconolactonase 3619 68.26 0 4101080..4101643 + 187 39936700 - RPA3638 - carbohydrate kinase, thermoresistant glucokinase 3620 66.06 0 4101767..4102585 + 272 39936701 cof RPA3639 - Cof-like hydrolase 3621 66.50 0 4102582..4104390 - 602 39936702 - RPA3640 - glycoside hydrolase family protein 3622 66.56 0 4104395..4106347 - 650 39936703 malQ RPA3641 - 4-alpha-glucanotransferase 3623 62.41 0 4106445..4108511 + 688 39936704 - RPA3642 - alpha amylase, catalytic region 3624 64.67 0 4108522..4111824 + 1100 39936705 - RPA3643 - putative trehalose synthase 3625 64.16 0 4111821..4113971 + 716 39936706 glgB RPA3644 - glycogen branching enzyme 3626 64.79 0 4114210..4116291 + 693 39936707 glgX RPA3645 - glycogen debranching protein GlgX 3627 66.16 0 4116288..4118054 + 588 39936708 - RPA3646 - putative maltooligosyltrehalose trehalohydrolase 3628 66.52 0 4118054..4120840 + 928 39936709 - RPA3647 - malto-oligosyltrehalose synthase 3629 63.11 0 4121257..4121565 - 102 39936710 - RPA3648 - hypothetical protein 3630 60.61 -1 4121610..4121906 + 98 39936711 - RPA3649 - hypothetical protein 3631 65.14 0 4122046..4124790 - 914 39936712 ligD RPA3650 - ATP-dependent DNA ligase 3632 63.49 0 4124924..4125805 + 293 39936713 - RPA3651 - Ku domain-containing protein 3633 61.40 -1 4126028..4126426 - 132 39936714 - RPA3652 - hypothetical protein 3634 63.22 0 4126487..4126747 - 86 39936715 - RPA3653 - SirA-like 3635 71.18 +1 4126878..4127498 + 206 39936716 mobA RPA3654 - molybdopterin-guanine dinucleotide biosynthesis protein A 3636 66.19 0 4127608..4128660 - 350 39936717 - RPA3655 - alcohol dehydrogenase 3637 66.26 0 4128739..4129728 - 329 39936718 - RPA3656 - hypothetical protein 3638 66.54 0 4129813..4131375 + 520 39936719 fadD2 RPA3657 - acyl-CoA synthetase 3639 68.80 +1 4131439..4132374 - 311 39936720 ureF RPA3658 - urease accessory protein UreF 3640 62.33 0 4132804..4133103 - 99 39936721 - RPA3659 - hypothetical protein 3641 64.39 0 4133317..4135029 - 570 39936722 ureC RPA3660 - urease subunit alpha 3642 67.60 0 4135026..4135562 - 178 39936723 - RPA3661 - metal dependent phosphohydrolase 3643 63.07 0 4135562..4135867 - 101 39936724 ureB RPA3662 - urease subunit beta 3644 65.68 0 4136029..4136331 - 100 39936725 ureA RPA3663 - urease subunit gamma 3645 67.76 0 4136378..4137295 - 305 39936726 ureD RPA3664 - urease accessory protein UreD 3646 64.37 0 4137494..4138189 - 231 39936727 - RPA3665 - possible ATP-binding component of ABC transporter 3647 64.05 0 4138409..4139173 - 254 39936728 - RPA3666 - possible ATP-binding component of ABC transporter 3648 64.08 0 4139170..4140369 - 399 39936729 - RPA3667 - inner-membrane translocator 3649 66.36 0 4140443..4142056 - 537 39936730 - RPA3668 - inner-membrane translocator 3650 62.66 0 4142166..4143488 - 440 39936731 - RPA3669 - putative urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor 3651 67.23 0 4143976..4145400 + 474 39936732 - RPA3670 - putative ATP-dependent RNA helicase 3652 61.65 -1 4145425..4145703 + 92 39936733 infA RPA3671 - translation initiation factor IF-1 3653 61.57 -1 4145943..4146197 + 84 39936734 cspA5 RPA3672 - cold-shock DNA-binding domain protein 3654 59.01 -1 4146311..4146937 - 208 39936735 - RPA3673 - hypothetical protein 3655 56.74 -2 4146950..4147483 - 177 39936736 - RPA3674 - hypothetical protein 3656 59.39 -1 4148391..4148555 + 54 39936737 - RPA3675 - Flp/Fap pilin component 3657 63.81 0 4148883..4149407 + 174 39936738 - RPA3676 - peptidase A24A, prepilin type IV 3658 66.49 0 4149514..4150095 + 193 39936739 - RPA3677 - hypothetical protein 3659 64.31 0 4150110..4151552 + 480 39936740 - RPA3678 - type II and III secretion system protein 3660 65.16 0 4151572..4152300 + 242 39936741 - RPA3679 - pilus assembly protein cpaD 3661 65.17 0 4152297..4153568 + 423 39936742 - RPA3680 - pilus assembly protein cpaE 3662 63.05 0 4153661..4155043 + 460 39936743 - RPA3681 - type II secretion system protein E 3663 60.72 -1 4155056..4156030 + 324 39936744 - RPA3682 - type II secretion system protein 3664 61.64 -1 4156039..4157013 + 324 39936745 - RPA3683 - type II secretion system protein 3665 67.28 0 4157037..4157846 - 269 39936746 - RPA3684 - TPR repeat-containing protein 3666 68.11 0 4157949..4159331 + 460 39936747 - RPA3685 - leucyl aminopeptidase 3667 67.61 0 4159324..4160169 + 281 39936748 - RPA3686 - NLP/P60 3668 66.67 0 4160153..4160791 - 212 39936749 - RPA3687 - nucleoside diphosphate pyrophosphatase 3669 64.35 0 4160799..4162436 - 545 39936750 - RPA3688 - peptide ABC transporter, ATP-binding protein 3670 62.17 0 4162442..4163620 - 392 39936751 - RPA3689 - binding-protein-dependent transport systems inner membrane component 3671 61.62 -1 4163620..4164729 - 369 39936752 - RPA3690 - binding-protein-dependent transport systems inner membrane component 3672 63.83 0 4164731..4166596 - 621 39936753 - RPA3691 - extracellular solute-binding protein, family 5 3673 62.63 0 4166611..4168470 - 619 39936754 - RPA3692 - putative peptide ABC transporter, periplasmic peptide-binding protein 3674 61.44 -1 4168719..4169273 - 184 39936755 - RPA3693 - putative cytochrome c 3675 70.19 +1 4169473..4170210 + 245 39936756 kdsB RPA3694 - 3-deoxy-manno-octulosonate cytidylyltransferase 3676 64.06 0 4170282..4171124 + 280 39936757 - RPA3695 - prephenate dehydratase 3677 66.83 0 4171164..4171790 - 208 39936758 - RPA3696 - TetR family transcriptional regulator 3678 67.35 0 4171914..4173092 + 392 39936759 emrA RPA3697 - putative multidrug resistance protein 3679 64.91 0 4173089..4174621 + 510 39936760 emrB2 RPA3698 - MFS family drug efflux pump 3680 65.57 0 4174638..4175366 + 242 39936761 - RPA3699 - iron-chelator utilization protein 3681 65.68 0 4175434..4176450 - 338 39936762 - RPA3700 - luciferase-like 3682 66.44 0 4176861..4177748 + 295 39936763 metF RPA3701 - 5,10-methylenetetrahydrofolate reductase 3683 66.25 0 4177761..4181642 + 1293 39936764 metH RPA3702 - B12-dependent methionine synthase 3684 65.96 0 4181818..4182099 + 93 39936765 - RPA3703 - hypothetical protein 3685 57.64 -2 4182776..4183063 + 95 39936766 - RPA3704 - excinuclease ABC subunit C 3686 68.00 0 4183381..4184883 - 500 39936767 glpK RPA3705 - glycerol kinase 3687 62.05 -1 4185092..4185676 + 194 39936768 nasT RPA3706 - putative two-component response regulator:antitermination factor NasT 3688 70.11 +1 4185673..4186833 + 386 39936769 - RPA3707 - nitrate transporter component, nrtA 3689 67.57 0 4186852..4187292 + 146 39936770 - RPA3708 - globin-like protein 65.23 MEAN 3.17 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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