IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213
4813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2939	 66.99	0	3340667..3341911	+	414	39936020	mex	RPA2955	-	RND efflux membrane fusion protein precursor
2940	 65.87	0	3341940..3345080	+	1046	39936021	mexF	RPA2956	-	putative RND multidrug efflux transporter MexF
2941	 66.48	0	3345579..3348227	+	882	39936022	-	RPA2957	-	putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
2942	 60.61	-1	3348336..3349376	-	346	39936023	-	RPA2958	-	putative DNA-binding protein
2943	 63.54	0	3349571..3352003	-	810	39936024	lon	RPA2959	-	ATP-dependent protease La
2944	 62.59	0	3352313..3353587	-	424	39936025	clpX	RPA2960	-	ATP-dependent protease ATP-binding subunit
2945	 62.13	0	3353980..3354618	-	212	39936026	clpP	RPA2961	-	endopeptidase Clp
2946	 64.31	0	3354932..3356290	-	452	39936027	tig	RPA2962	-	trigger factor
2947	 61.81	-1	3356681..3357154	-	157	39936028	-	RPA2963	-	hypothetical protein
2948	 69.49	+1	3357277..3358482	+	401	39936029	-	RPA2964	-	multicopper oxidase, type 1
2949	 70.53	+1	3358531..3360030	-	499	39936030	yjeF	RPA2965	-	hypothetical protein
2950	 59.88	-1	3360442..3360780	+	112	39936031	glnB	RPA2966	-	nitrogen regulatory protein P-II
2951	 61.99	-1	3360870..3362279	+	469	39936032	glnA	RPA2967	-	glutamine synthetase, type I
2952	 67.33	0	3362578..3363327	+	249	39936033	-	RPA2968	-	TetR family transcriptional regulator
2953	 66.67	0	3363340..3363951	+	203	39936034	-	RPA2969	-	hypothetical protein
2954	 66.51	0	3364094..3365371	-	425	39936035	bioA	RPA2970	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2955	 69.01	+1	3365368..3366006	-	212	39936036	bioD	RPA2971	-	dithiobiotin synthetase
2956	 68.35	0	3366003..3367133	-	376	39936037	bioF	RPA2972	-	8-amino-7-oxononanoate synthase
2957	 68.26	0	3367274..3367837	-	187	39936038	-	RPA2973	-	hypothetical protein
2958	 66.11	0	3367926..3369356	-	476	39936039	-	RPA2974	-	putative 6-aminohexanoate-cyclic-dimer hydrolase
2959	 67.37	0	3369556..3370545	-	329	39936040	serA1	RPA2975	-	putative phosphoglycerate dehydrogenase
2960	 70.67	+1	3370654..3371553	-	299	39936041	-	RPA2976	-	DMT family permease
2961	 65.53	0	3372218..3375991	+	1257	39936042	nrd	RPA2977	-	ribonucleotide-diphosphate reductase subunit alpha
2962	 45.94	-2	3376115..3377209	+	364	39936043	-	RPA2978	-	hypothetical protein
2963	 65.86	0	3377373..3377621	+	82	39936044	-	RPA2979	-	hypothetical protein
2964	 63.48	0	3377728..3378324	-	198	39936045	-	RPA2980	-	integrase
2965	 63.61	0	3378321..3378647	-	108	39936046	-	RPA2981	-	P2 ISBm2
2966	 58.05	-2	3378641..3378907	-	88	39936047	-	RPA2982	-	hypothetical protein
2967	 63.75	0	3379718..3380197	+	159	39936048	-	RPA2983	-	hypothetical protein
2968	 65.54	0	3380294..3381445	-	383	39936049	-	RPA2984	-	putative diguanylate cyclase (GGDEF)
2969	 69.14	+1	3381693..3382379	+	228	39936050	-	RPA2985	-	hypothetical protein
2970	 66.96	0	3383055..3383399	-	114	39936051	-	RPA2986	-	5-carboxymethyl-2-hydroxymuconate delta isomerase
2971	 71.87	+2	3383593..3384438	+	281	39936052	-	RPA2987	-	hypothetical protein
2972	 65.28	0	3384525..3385103	+	192	39936053	yrkN	RPA2988	-	GCN5-related N-acetyltransferase
2973	 69.76	+1	3385144..3386145	+	333	39936054	-	RPA2989	-	putative quinone oxidoreductase
2974	 63.82	0	3386280..3386771	-	163	39936055	-	RPA2990	-	hypothetical protein
2975	 68.01	0	3386893..3387189	-	98	39936056	-	RPA2991	-	hypothetical protein
2976	 65.50	0	3387497..3388180	-	227	39936057	-	RPA2992	-	hypothetical protein
2977	 70.95	+1	3388210..3388863	-	217	39936058	-	RPA2993	-	hypothetical protein
2978	 67.92	0	3388995..3389873	-	292	39936059	-	RPA2994	-	LysR family transcriptional regulator
2979	 69.85	+1	3389982..3391553	+	523	39936060	nuoL3	RPA2995	-	NADH-ubiquinone/plastoquinone (complex I)
2980	 68.15	0	3391575..3394001	+	808	39936061	-	RPA2996	-	hypothetical protein
2981	 59.03	-1	3394158..3394445	+	95	39936062	-	RPA2997	-	hypothetical protein
2982	 65.15	0	3394449..3395372	+	307	39936063	dapA1	RPA2998	-	putative dihydrodipicolinate synthase
2983	 66.44	0	3395404..3395850	-	148	39936064	ptsN2	RPA2999	-	putative nitrogen regulatory IIA protein
2984	 62.57	0	3395874..3396557	-	227	39936065	kdpE	RPA3000	-	two-component osmotic transcriptional regulator KdpE
2985	 66.12	0	3396563..3399286	-	907	39936066	kdpD	RPA3001	-	two component osmosensitive K+channel and sensor histidine kinase, KdpD
2986	 66.50	0	3399332..3399937	-	201	39936067	kdpC	RPA3002	-	potassium-transporting ATPase, C subunit
2987	 65.31	0	3399950..3402079	-	709	39936068	kdpB	RPA3003	-	potassium-transporting ATPase subunit B
2988	 63.09	0	3402089..3403792	-	567	39936069	kdpA	RPA3004	-	potassium-transporting ATPase subunit A
2989	 62.24	0	3404124..3404417	+	97	39936070	-	RPA3005	-	hypothetical protein
2990	 64.53	0	3404723..3405283	+	186	39936071	-	RPA3006	-	hypothetical protein
2991	 63.56	0	3405291..3406031	+	246	39936072	-	RPA3007	-	hypothetical protein
2992	 62.15	0	3406021..3407925	-	634	39936073	kup2	RPA3008	-	potassium uptake protein Kup
2993	 57.69	-2	3408431..3408586	+	51	39936074	pucBc	RPA3009	-	light harvesting protein B-800-850, beta chain C (antenna pigment protein, beta chain C) (LH II-C beta)
2994	 59.47	-1	3409321..3409959	-	212	39936075	-	RPA3011	-	hypothetical protein
2995	 58.89	-2	3410110..3410289	-	59	39936076	pucAd	RPA3012	-	light harvesting protein B-800-850, alpha chain D (antenna pigment protein, alpha chain D) (LH II-D alpha)
2996	 57.69	-2	3410302..3410457	-	51	39936077	pucBd	RPA3013	-	light harvesting protein B-800-850, beta chain D (antenna pigment protein, beta chain D) (LH II-D beta)
2997	 63.56	0	3410877..3411584	+	235	39936078	-	RPA3014	-	two-component LuxR family transcriptional regulator
2998	 64.38	0	3411808..3414084	+	758	39936079	phyB1	RPA3015	-	bacteriophytochrome PhyB
2999	 64.30	0	3414088..3416415	+	775	39936080	phyB2	RPA3016	-	bacteriophytochrome PhyB
3000	 62.15	0	3416416..3416880	+	154	39936081	rphyB	RPA3017	-	response regulator receiver (CheY-like protein)
3001	 65.08	0	3416877..3418013	+	378	39936082	-	RPA3018	-	response regulator receiver sensor signal transduction histidine kinase
3002	 66.67	0	3421479..3422678	-	399	39936083	mexE	RPA3020	-	RND multidrug efflux membrane fusion protein MexE precursor
3003	 68.37	0	3422874..3423461	+	195	39936084	-	RPA3021	-	TetR family transcriptional regulator
3004	 66.92	0	3423592..3424758	+	388	39936085	-	RPA3022	-	putative diguanylate cyclase (GGDEF)
3005	 64.03	0	3424892..3425878	+	328	39936086	-	RPA3023	-	aldo/keto reductase
3006	 64.23	0	3425900..3426310	-	136	39936087	-	RPA3024	-	hypothetical protein
3007	 67.28	0	3426447..3426773	+	108	39936088	-	RPA3025	-	hypothetical protein
3008	 64.82	0	3426819..3427469	+	216	39936089	-	RPA3026	-	abortive infection protein
3009	 64.47	0	3427479..3429341	-	620	39936090	kup1	RPA3027	-	K+ potassium transporter
3010	 66.90	0	3429602..3430441	-	279	39936091	-	RPA3028	-	hypothetical protein
3011	 50.27	-2	3430730..3430912	+	60	39936092	-	RPA3029	-	hypothetical protein
3012	 63.97	0	3431088..3431384	+	98	39936093	-	RPA3030	-	hypothetical protein
3013	 62.18	0	3431503..3432126	-	207	39936094	-	RPA3031	-	acetyltransferase
3014	 64.91	0	3432381..3432779	-	132	39936095	-	RPA3032	-	phenylacetic acid degradation-like protein
3015	 63.31	0	3432927..3434207	-	426	39936096	argE	RPA3033	-	acetylornithine deacetylase
3016	 64.02	0	3434340..3434603	+	87	39936097	-	RPA3034	-	hypothetical protein
3017	 64.27	0	3434632..3435048	-	138	39936098	-	RPA3035	-	hypothetical protein
3018	 58.63	-2	3435160..3435408	-	82	39936099	-	RPA3036	-	hypothetical protein
3019	 61.49	-1	3436290..3436868	-	192	39936100	-	RPA3037	-	CreA family protein
3020	 66.11	0	3437018..3438631	+	537	39936101	-	RPA3038	-	hypothetical protein
3021	 65.71	0	3438785..3439723	+	312	39936102	-	RPA3039	-	polysaccharide deacetylase
3022	 68.97	+1	3439761..3440324	+	187	39936103	-	RPA3040	-	hypothetical protein
3023	 64.44	0	3440328..3440777	-	149	39936104	-	RPA3041	-	hypothetical protein
3024	 66.75	0	3440872..3443196	-	774	39936105	mao	RPA3042	-	malic enzyme
3025	 65.43	0	3443227..3445002	-	591	39936106	aspS	RPA3043	-	aspartyl-tRNA synthetase
3026	 67.14	0	3445262..3446740	+	492	39936107	-	RPA3044	-	hypothetical protein
3027	 66.24	0	3446844..3448022	+	392	39936108	rnd	RPA3045	-	ribonuclease D
3028	 66.34	0	3448019..3448942	+	307	39936109	-	RPA3046	-	hypothetical protein
3029	 67.20	0	3448964..3450469	-	501	39936110	-	RPA3047	-	Ppx/GppA phosphatase
3030	 64.35	0	3450482..3452773	-	763	39936111	-	RPA3048	-	polyphosphate kinase
3031	 67.97	0	3452843..3453532	-	229	39936112	-	RPA3049	-	hypothetical protein
3032	 61.43	-1	3453563..3454192	-	209	39936113	-	RPA3050	-	CDP-alcohol phosphatidyltransferase
3033	 67.32	0	3454375..3455448	+	357	39936114	purM	RPA3051	-	phosphoribosylaminoimidazole synthetase
3034	 67.13	0	3455457..3456110	+	217	39936115	purN	RPA3052	-	phosphoribosylglycinamide formyltransferase
3035	 54.90	-2	3456174..3456377	-	67	39936116	cspA3	RPA3053	-	cold-shock DNA-binding domain protein
3036	 62.79	0	3456869..3457642	+	257	39936117	-	RPA3054	-	Crp/FNR family transcriptional regulator
3037	 64.11	0	3457725..3458546	-	273	39936118	-	RPA3055	-	TerC family integral membrane protein
3038	 62.88	0	3458619..3459041	-	140	39936119	-	RPA3056	-	nucleoside-diphosphate kinase
65.23	MEAN

3.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.