IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213
4813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2905	 64.51	0	3301233..3302159	-	308	39935986	tsf	RPA2921	-	elongation factor Ts
2906	 64.86	0	3302284..3303279	-	331	39935987	rpsB	RPA2922	-	30S ribosomal protein S2
2907	 71.93	+2	3303514..3306003	-	829	39935988	-	RPA2923	-	hypothetical protein
2908	 66.06	0	3306165..3309620	-	1151	39935989	dnaE	RPA2924	-	DNA polymerase III subunit alpha
2909	 65.29	0	3310205..3310714	+	169	39935990	-	RPA2925	-	hypothetical protein
2910	 66.67	0	3310911..3311609	-	232	39935991	-	RPA2926	-	lipoprotein ABC transporter ATP-binding protein
2911	 63.54	0	3311621..3312901	-	426	39935992	-	RPA2927	-	lipoprotein releasing system, transmembrane protein, LolC/E family
2912	 64.46	0	3312981..3314297	-	438	39935993	proS	RPA2928	-	prolyl-tRNA synthetase
2913	 69.39	+1	3314473..3316053	-	526	39935994	-	RPA2929	-	hypothetical protein
2914	 66.86	0	3316071..3316598	-	175	39935995	-	RPA2930	-	hypothetical protein
2915	 64.44	0	3316598..3317137	-	179	39935996	-	RPA2931	-	hypothetical protein
2916	 70.02	+1	3317263..3317679	-	138	39935997	-	RPA2932	-	hypothetical protein
2917	 65.25	0	3318298..3318579	-	93	39935998	-	RPA2933	-	hypothetical protein
2918	 65.43	0	3318583..3318987	-	134	39935999	-	RPA2934	-	glyoxalase/bleomycin resistance protein/dioxygenase
2919	 66.67	0	3319029..3320699	-	556	39936000	-	RPA2935	-	Beta-lactamase-like
2920	 69.14	+1	3320699..3321505	-	268	39936001	birA	RPA2936	-	biotin--acetyl-CoA-carboxylase ligase
2921	 63.82	0	3321506..3322945	-	479	39936002	nuoN1	RPA2937	-	NADH dehydrogenase subunit N
2922	 64.16	0	3322965..3324482	-	505	39936003	nuoM1	RPA2938	-	NADH dehydrogenase subunit M
2923	 63.61	0	3324483..3326576	-	697	39936004	nuoL1	RPA2939	-	NADH dehydrogenase subunit L
2924	 60.58	-1	3326636..3326947	-	103	39936005	nuoK1	RPA2940	-	NADH dehydrogenase subunit K
2925	 63.69	0	3326944..3327582	-	212	39936006	nuoJ1	RPA2941	-	NADH dehydrogenase subunit J
2926	 63.60	0	3327592..3328080	-	162	39936007	nuoI1	RPA2942	-	NADH dehydrogenase subunit I
2927	 63.94	0	3328088..3329113	-	341	39936008	nuoH1	RPA2943	-	NADH dehydrogenase subunit H
2928	 68.11	0	3329123..3331207	-	694	39936009	nuoG1	RPA2944	-	NADH dehydrogenase subunit G
2929	 66.67	0	3331204..3332529	-	441	39936010	nuoF1	RPA2945	-	NADH dehydrogenase I subunit F
2930	 62.50	0	3332548..3332763	-	71	39936011	-	RPA2946	-	hypothetical protein
2931	 66.27	0	3332760..3333509	-	249	39936012	nuoE1	RPA2947	-	NADH dehydrogenase subunit E
2932	 65.64	0	3333512..3334483	-	323	39936013	fkbM	RPA2948	-	FkbM family methyltransferase
2933	 63.94	0	3334480..3335688	-	402	39936014	nuoD	RPA2949	-	NADH dehydrogenase subunit D
2934	 62.44	0	3335740..3336354	-	204	39936015	nuoC	RPA2950	-	NADH dehydrogenase subunit C
2935	 64.99	0	3336368..3336964	-	198	39936016	nuoB1	RPA2951	-	NADH dehydrogenase subunit B
2936	 54.92	-2	3336976..3337341	-	121	39936017	nuoA1	RPA2952	-	NADH dehydrogenase subunit A
2937	 64.10	0	3338656..3338967	+	103	39936018	hupA	RPA2953	-	DNA-binding protein HU-alpha (NS2) (HU-2)
2938	 63.05	0	3339219..3340517	+	432	39936019	pepT	RPA2954	-	peptidase T
2939	 66.99	0	3340667..3341911	+	414	39936020	mex	RPA2955	-	RND efflux membrane fusion protein precursor
2940	 65.87	0	3341940..3345080	+	1046	39936021	mexF	RPA2956	-	putative RND multidrug efflux transporter MexF
2941	 66.48	0	3345579..3348227	+	882	39936022	-	RPA2957	-	putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
2942	 60.61	-1	3348336..3349376	-	346	39936023	-	RPA2958	-	putative DNA-binding protein
2943	 63.54	0	3349571..3352003	-	810	39936024	lon	RPA2959	-	ATP-dependent protease La
2944	 62.59	0	3352313..3353587	-	424	39936025	clpX	RPA2960	-	ATP-dependent protease ATP-binding subunit
2945	 62.13	0	3353980..3354618	-	212	39936026	clpP	RPA2961	-	endopeptidase Clp
2946	 64.31	0	3354932..3356290	-	452	39936027	tig	RPA2962	-	trigger factor
2947	 61.81	-1	3356681..3357154	-	157	39936028	-	RPA2963	-	hypothetical protein
2948	 69.49	+1	3357277..3358482	+	401	39936029	-	RPA2964	-	multicopper oxidase, type 1
2949	 70.53	+1	3358531..3360030	-	499	39936030	yjeF	RPA2965	-	hypothetical protein
2950	 59.88	-1	3360442..3360780	+	112	39936031	glnB	RPA2966	-	nitrogen regulatory protein P-II
2951	 61.99	-1	3360870..3362279	+	469	39936032	glnA	RPA2967	-	glutamine synthetase, type I
2952	 67.33	0	3362578..3363327	+	249	39936033	-	RPA2968	-	TetR family transcriptional regulator
2953	 66.67	0	3363340..3363951	+	203	39936034	-	RPA2969	-	hypothetical protein
2954	 66.51	0	3364094..3365371	-	425	39936035	bioA	RPA2970	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2955	 69.01	+1	3365368..3366006	-	212	39936036	bioD	RPA2971	-	dithiobiotin synthetase
2956	 68.35	0	3366003..3367133	-	376	39936037	bioF	RPA2972	-	8-amino-7-oxononanoate synthase
2957	 68.26	0	3367274..3367837	-	187	39936038	-	RPA2973	-	hypothetical protein
2958	 66.11	0	3367926..3369356	-	476	39936039	-	RPA2974	-	putative 6-aminohexanoate-cyclic-dimer hydrolase
2959	 67.37	0	3369556..3370545	-	329	39936040	serA1	RPA2975	-	putative phosphoglycerate dehydrogenase
2960	 70.67	+1	3370654..3371553	-	299	39936041	-	RPA2976	-	DMT family permease
2961	 65.53	0	3372218..3375991	+	1257	39936042	nrd	RPA2977	-	ribonucleotide-diphosphate reductase subunit alpha
2962	 45.94	-2	3376115..3377209	+	364	39936043	-	RPA2978	-	hypothetical protein
2963	 65.86	0	3377373..3377621	+	82	39936044	-	RPA2979	-	hypothetical protein
2964	 63.48	0	3377728..3378324	-	198	39936045	-	RPA2980	-	integrase
2965	 63.61	0	3378321..3378647	-	108	39936046	-	RPA2981	-	P2 ISBm2
2966	 58.05	-2	3378641..3378907	-	88	39936047	-	RPA2982	-	hypothetical protein
2967	 63.75	0	3379718..3380197	+	159	39936048	-	RPA2983	-	hypothetical protein
2968	 65.54	0	3380294..3381445	-	383	39936049	-	RPA2984	-	putative diguanylate cyclase (GGDEF)
2969	 69.14	+1	3381693..3382379	+	228	39936050	-	RPA2985	-	hypothetical protein
2970	 66.96	0	3383055..3383399	-	114	39936051	-	RPA2986	-	5-carboxymethyl-2-hydroxymuconate delta isomerase
2971	 71.87	+2	3383593..3384438	+	281	39936052	-	RPA2987	-	hypothetical protein
2972	 65.28	0	3384525..3385103	+	192	39936053	yrkN	RPA2988	-	GCN5-related N-acetyltransferase
2973	 69.76	+1	3385144..3386145	+	333	39936054	-	RPA2989	-	putative quinone oxidoreductase
2974	 63.82	0	3386280..3386771	-	163	39936055	-	RPA2990	-	hypothetical protein
2975	 68.01	0	3386893..3387189	-	98	39936056	-	RPA2991	-	hypothetical protein
2976	 65.50	0	3387497..3388180	-	227	39936057	-	RPA2992	-	hypothetical protein
2977	 70.95	+1	3388210..3388863	-	217	39936058	-	RPA2993	-	hypothetical protein
2978	 67.92	0	3388995..3389873	-	292	39936059	-	RPA2994	-	LysR family transcriptional regulator
2979	 69.85	+1	3389982..3391553	+	523	39936060	nuoL3	RPA2995	-	NADH-ubiquinone/plastoquinone (complex I)
2980	 68.15	0	3391575..3394001	+	808	39936061	-	RPA2996	-	hypothetical protein
2981	 59.03	-1	3394158..3394445	+	95	39936062	-	RPA2997	-	hypothetical protein
2982	 65.15	0	3394449..3395372	+	307	39936063	dapA1	RPA2998	-	putative dihydrodipicolinate synthase
2983	 66.44	0	3395404..3395850	-	148	39936064	ptsN2	RPA2999	-	putative nitrogen regulatory IIA protein
2984	 62.57	0	3395874..3396557	-	227	39936065	kdpE	RPA3000	-	two-component osmotic transcriptional regulator KdpE
2985	 66.12	0	3396563..3399286	-	907	39936066	kdpD	RPA3001	-	two component osmosensitive K+channel and sensor histidine kinase, KdpD
2986	 66.50	0	3399332..3399937	-	201	39936067	kdpC	RPA3002	-	potassium-transporting ATPase, C subunit
2987	 65.31	0	3399950..3402079	-	709	39936068	kdpB	RPA3003	-	potassium-transporting ATPase subunit B
2988	 63.09	0	3402089..3403792	-	567	39936069	kdpA	RPA3004	-	potassium-transporting ATPase subunit A
2989	 62.24	0	3404124..3404417	+	97	39936070	-	RPA3005	-	hypothetical protein
2990	 64.53	0	3404723..3405283	+	186	39936071	-	RPA3006	-	hypothetical protein
2991	 63.56	0	3405291..3406031	+	246	39936072	-	RPA3007	-	hypothetical protein
2992	 62.15	0	3406021..3407925	-	634	39936073	kup2	RPA3008	-	potassium uptake protein Kup
2993	 57.69	-2	3408431..3408586	+	51	39936074	pucBc	RPA3009	-	light harvesting protein B-800-850, beta chain C (antenna pigment protein, beta chain C) (LH II-C beta)
2994	 59.47	-1	3409321..3409959	-	212	39936075	-	RPA3011	-	hypothetical protein
2995	 58.89	-2	3410110..3410289	-	59	39936076	pucAd	RPA3012	-	light harvesting protein B-800-850, alpha chain D (antenna pigment protein, alpha chain D) (LH II-D alpha)
2996	 57.69	-2	3410302..3410457	-	51	39936077	pucBd	RPA3013	-	light harvesting protein B-800-850, beta chain D (antenna pigment protein, beta chain D) (LH II-D beta)
2997	 63.56	0	3410877..3411584	+	235	39936078	-	RPA3014	-	two-component LuxR family transcriptional regulator
2998	 64.38	0	3411808..3414084	+	758	39936079	phyB1	RPA3015	-	bacteriophytochrome PhyB
2999	 64.30	0	3414088..3416415	+	775	39936080	phyB2	RPA3016	-	bacteriophytochrome PhyB
3000	 62.15	0	3416416..3416880	+	154	39936081	rphyB	RPA3017	-	response regulator receiver (CheY-like protein)
3001	 65.08	0	3416877..3418013	+	378	39936082	-	RPA3018	-	response regulator receiver sensor signal transduction histidine kinase
3002	 66.67	0	3421479..3422678	-	399	39936083	mexE	RPA3020	-	RND multidrug efflux membrane fusion protein MexE precursor
3003	 68.37	0	3422874..3423461	+	195	39936084	-	RPA3021	-	TetR family transcriptional regulator
3004	 66.92	0	3423592..3424758	+	388	39936085	-	RPA3022	-	putative diguanylate cyclase (GGDEF)
65.23	MEAN

3.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.