IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213
4813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1940	 58.57	-2	2195661..2195870	-	69	39935021	-	RPA1952	-	hypothetical protein
1941	 68.41	+1	2195870..2197882	-	670	39935022	-	RPA1953	-	FusB/FusC fusaric acid resistance pump
1942	 66.67	0	2198048..2198734	+	228	39935023	-	RPA1954	-	TetR family transcriptional regulator
1943	 64.05	0	2198871..2199980	-	369	39935024	-	RPA1955	-	glutathione dependent formaldehyde dehydrogenase
1944	 69.36	+1	2200078..2201601	-	507	39935025	-	RPA1956	-	ATPase
1945	 67.06	0	2201728..2202744	-	338	39935026	-	RPA1957	-	alkanal monooxygenase (LuxA-like protein)
1946	 62.34	0	2202856..2203479	-	207	39935027	-	RPA1958	-	TetR family transcriptional regulator
1947	 67.77	0	2203559..2204647	+	362	39935028	-	RPA1959	-	putative RND efflux membrane protein
1948	 68.16	0	2204644..2205717	+	357	39935029	-	RPA1960	-	putative RND efflux membrane protein
1949	 64.90	0	2205714..2208764	+	1016	39935030	-	RPA1961	-	RND efflux transporter
1950	 65.96	0	2208766..2209047	+	93	39935031	-	RPA1962	-	hypothetical protein
1951	 64.32	0	2209076..2210269	+	397	39935032	-	RPA1963	-	patatin-like phospholipase domain-containing protein
1952	 65.05	0	2210328..2210885	+	185	39935033	-	RPA1964	-	hypothetical protein
1953	 64.15	0	2210911..2212899	-	662	39935034	-	RPA1965	-	putative adenylate/guanylate cyclase
1954	 65.40	0	2213166..2213798	-	210	39935035	-	RPA1966	-	TetR family transcriptional regulator
1955	 69.27	+1	2213962..2215077	+	371	39935036	-	RPA1967	-	putative component of multidrug efflux system
1956	 66.67	0	2215077..2218232	+	1051	39935037	-	RPA1968	-	RND efflux transporter
1957	 66.67	0	2218343..2219338	+	331	39935038	yjbN	RPA1969	-	tRNA-dihydrouridine synthase A
1958	 67.97	0	2219352..2219888	-	178	39935039	-	RPA1970	-	hypothetical protein
1959	 67.03	0	2219911..2220183	-	90	39935040	-	RPA1971	-	hypothetical protein
1960	 66.92	0	2220180..2221778	-	532	39935041	-	RPA1972	-	periplasmic sensor signal transduction histidine kinase
1961	 66.21	0	2221944..2222813	-	289	39935042	-	RPA1973	-	3-hydroxyisobutyrate dehydrogenase
1962	 67.12	0	2223122..2224234	+	370	39935043	-	RPA1974	-	ATP/GTP-binding-like protein
1963	 62.91	0	2224485..2225576	+	363	39935044	-	RPA1975	-	twin-arginine translocation pathway signal
1964	 64.66	0	2225766..2227607	-	613	39935045	-	RPA1976	-	TRAP dicarboxylate family transporter DctM subunit
1965	 58.96	-1	2227645..2228241	-	198	39935046	-	RPA1977	-	TRAP dicarboxylate family transporter DctQ subunit
1966	 66.57	0	2228415..2229449	-	344	39935047	moaA	RPA1978	-	molybdenum cofactor biosynthesis protein A
1967	 69.11	+1	2229556..2230005	-	149	39935048	-	RPA1979	-	hypothetical protein
1968	 66.81	0	2230169..2230846	-	225	39935049	cbbZ	RPA1980	-	phosphoglycolate phosphatase
1969	 66.09	0	2230997..2231695	+	232	39935050	cbbI	RPA1981	-	ribose-5-phosphate isomerase A
1970	 60.93	-1	2231692..2232231	+	179	39935051	-	RPA1982	-	hypothetical protein
1971	 65.95	0	2232249..2233634	+	461	39935052	gor	RPA1983	-	glutathione reductase
1972	 66.67	0	2233823..2235211	+	462	39935053	aroG2	RPA1984	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1973	 68.64	+1	2235342..2235695	+	117	39935054	-	RPA1985	-	diacylglycerol kinase
1974	 67.46	0	2235739..2237493	+	584	39935055	nadE	RPA1986	-	NAD synthetase
1975	 54.24	-2	2237747..2238076	-	109	39935056	-	RPA1987	-	hypothetical protein
1976	 61.71	-1	2238302..2239309	-	335	39935057	-	RPA1988	-	AraC family transcriptional regulator
1977	 65.44	0	2239874..2240200	+	108	39935058	-	RPA1989	-	hypothetical protein
1978	 62.93	0	2240367..2242157	+	596	39935059	-	RPA1990	-	sulfatase
1979	 61.86	-1	2242169..2243230	+	353	39935060	-	RPA1991	-	hypothetical protein
1980	 59.85	-1	2243485..2243895	-	136	39935061	-	RPA1992	-	NtrR protein
1981	 60.61	-1	2243892..2244155	-	87	39935062	-	RPA1993	-	virulence-associated protein
1982	 66.20	0	2244336..2244761	+	141	39935063	-	RPA1994	-	hypothetical protein
1983	 69.49	+1	2244858..2246027	-	389	39935064	-	RPA1995	-	hypothetical protein
1984	 68.61	+1	2246213..2246521	-	102	39935065	-	RPA1996	-	hypothetical protein
1985	 65.37	0	2246922..2248313	+	463	39935066	cysS	RPA1997	-	cysteinyl-tRNA synthetase
1986	 62.88	0	2248843..2248974	+	43	39935067	-	RPA1998	-	hypothetical protein
1987	 65.87	0	2248971..2249474	+	167	39935068	-	RPA1999	-	GCN5-related N-acetyltransferase
1988	 64.29	0	2249471..2251069	+	532	39935069	leuA	RPA2000	-	alpha-isopropylmalate/homocitrate synthase family transferase
1989	 67.83	0	2251263..2252807	+	514	39935070	-	RPA2001	-	hypothetical protein
1990	 65.96	0	2252819..2254228	+	469	39935071	-	RPA2002	-	FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal
1991	 66.04	0	2254253..2256322	-	689	39935072	-	RPA2003	-	cytochrome c precursor
1992	 63.21	0	2256505..2257140	-	211	39935073	-	RPA2004	-	hypothetical protein
1993	 64.37	0	2257299..2259254	+	651	39935074	-	RPA2005	-	multidrug ABC transporter
1994	 66.38	0	2259303..2260001	+	232	161610773	psd	RPA2006	-	phosphatidylserine decarboxylase
1995	 66.56	0	2260031..2260945	+	304	39935076	pssA	RPA2007	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1996	 68.33	0	2261081..2261800	+	239	39935077	-	RPA2008	-	hypothetical protein
1997	 60.72	-1	2262032..2262805	+	257	39935078	-	RPA2009	-	MotA/TolQ/ExbB proton channel
1998	 64.48	0	2262836..2263660	+	274	39935079	motB1	RPA2010	-	putative chemotaxis protein motB1
1999	 65.18	0	2263810..2265765	+	651	39935080	-	RPA2011	-	puative potassium uptake protein Kup
2000	 66.36	0	2265975..2266301	+	108	39935081	-	RPA2012	-	rhodanese-like protein
2001	 63.82	0	2266324..2267481	+	385	39935082	-	RPA2013	-	hypothetical protein
2002	 61.56	-1	2267489..2268604	+	371	39935083	-	RPA2014	-	extracellular solute-binding protein, family 1
2003	 62.89	0	2268717..2269856	+	379	39935084	-	RPA2015	-	hypothetical protein
2004	 64.52	0	2269872..2271830	-	652	39935085	-	RPA2016	-	methyltransferase related protein
2005	 67.10	0	2272117..2273049	-	310	39935086	-	RPA2017	-	lipid A biosynthesis lauroyl acyltransferase
2006	 65.69	0	2273049..2274071	-	340	39935087	-	RPA2018	-	alcohol dehydrogenase
2007	 66.98	0	2274168..2275448	-	426	39935088	-	RPA2019	-	3-oxoacyl-(acyl carrier protein) synthase II
2008	 67.91	0	2275459..2276667	-	402	39935089	-	RPA2020	-	3-oxoacyl-(acyl carrier protein) synthase II
2009	 61.36	-1	2276660..2277130	-	156	39935090	-	RPA2021	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
2010	 58.87	-2	2277156..2277437	-	93	39935091	-	RPA2022	-	acyl carrier protein
2011	 66.38	0	2277604..2277957	-	117	39935092	-	RPA2023	-	hypothetical protein
2012	 63.14	0	2278154..2278777	+	207	39935093	-	RPA2024	-	hypothetical protein
2013	 66.23	0	2278805..2279266	-	153	39935094	-	RPA2025	-	Mg2+ transporter
2014	 64.99	0	2279693..2282260	+	855	39935095	-	RPA2026	-	ferric siderophore receptor
2015	 65.58	0	2282020..2283771	-	583	39935096	-	RPA2027	-	hypothetical protein
2016	 66.15	0	2284104..2284685	+	193	39935097	-	RPA2028	-	hypothetical protein
2017	 68.17	0	2284710..2285441	-	243	39935098	serB	RPA2029	-	putative phosphoserine phosphatase
2018	 69.98	+1	2285587..2286552	+	321	39935099	miaA	RPA2030	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2019	 64.36	0	2286918..2288696	+	592	39935100	ilvI	RPA2031	-	acetolactate synthase 3 catalytic subunit
2020	 64.46	0	2288912..2289454	+	180	39935101	ilvH	RPA2032	-	acetolactate synthase 3 regulatory subunit
2021	 65.16	0	2289458..2289856	-	132	39935102	-	RPA2033	-	putative AtsE
2022	 68.26	0	2290068..2290943	+	291	39935103	-	RPA2034	-	DMT family permease
2023	 63.73	0	2291138..2292157	+	339	39935104	ilvC	RPA2035	-	ketol-acid reductoisomerase
2024	 67.22	0	2292447..2293175	+	242	39935105	-	RPA2036	-	GntR family transcriptional regulator
2025	 62.21	0	2293274..2294506	+	410	39935106	-	RPA2037	-	periplasmic binding protein
2026	 66.20	0	2294633..2295487	+	284	39935107	-	RPA2038	-	short-chain dehydrogenase/reductase SDR
2027	 64.92	0	2295590..2297137	-	515	39935108	-	RPA2039	-	substrate-binding region of ABC-type glycine betaine transport system
2028	 69.79	+1	2297134..2297742	-	202	39935109	-	RPA2040	-	choline ABC transporter ATP-binding subunit
2029	 68.52	+1	2297977..2298837	+	286	39935110	-	RPA2041	-	ABC-transport protein, ATP-binding protein
2030	 64.78	0	2299064..2299858	+	264	39935111	-	RPA2042	-	putative ABC transporter, permease protein
2031	 64.91	0	2299917..2300939	+	340	39935112	-	RPA2043	-	putative ABC transporter, periplasmic substrate-binding protein
2032	 65.83	0	2300947..2301663	+	238	39935113	-	RPA2044	-	hypothetical protein
2033	 66.27	0	2301725..2302735	-	336	39935114	bioB	RPA2045	-	biotin synthase
2034	 64.83	0	2303251..2304825	+	524	39935115	leuI	RPA2046	-	2-isopropylmalate synthase
2035	 62.09	0	2305049..2306053	+	334	39935116	dctP1	RPA2047	-	TRAP dicarboxylate family transporter DctP subunit
2036	 60.68	-1	2306192..2306776	+	194	39935117	dctQ1	RPA2048	-	TRAP dicarboxylate family transporter DctQ subunit
2037	 63.05	0	2306773..2308098	+	441	39935118	dctM1	RPA2049	-	TRAP dicarboxylate family transporter DctM subunit
2038	 70.33	+1	2308231..2308830	+	199	39935119	-	RPA2050	-	hypothetical protein
2039	 64.72	0	2309647..2312004	+	785	39935120	-	RPA2051	-	putative ornithine decarboxylase
65.23	MEAN

3.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.