IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213
4813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1782	 65.23	0	2009574..2010614	-	346	39934862	-	RPA1793	-	branched-chain amino acid transport system permease protein
1783	 67.75	0	2010746..2011297	+	183	39934863	-	RPA1794	-	MarR family transcriptional regulator
1784	 64.42	0	2011435..2013261	-	608	39934864	-	RPA1795	-	potassium-efflux system protein
1785	 63.68	0	2013917..2015491	+	524	39934865	-	RPA1796	-	putative adenylate/guanylate cyclase
1786	 70.96	+1	2015733..2017013	-	426	39934866	-	RPA1797	-	hypothetical protein
1787	 63.59	0	2017212..2018447	-	411	39934867	-	RPA1798	-	putative periplasmic binding protein for ABC transporter for branched chain amino acids
1788	 67.14	0	2018690..2020177	-	495	39934868	ung	RPA1799	-	Uracil-DNA glycosylase:Phage SPO1 DNA polymerase-related protein
1789	 66.03	0	2020274..2021524	-	416	39934869	-	RPA1800	-	Elongator protein 3/MiaB/NifB
1790	 69.08	+1	2021694..2022479	+	261	39934870	-	RPA1801	-	hypothetical protein
1791	 70.49	+1	2022532..2023968	+	478	39934871	-	RPA1802	-	hypothetical protein
1792	 65.80	0	2024122..2027709	+	1195	39934872	dnaE2	RPA1803	-	error-prone DNA polymerase
1793	 68.13	0	2027715..2028668	-	317	39934873	-	RPA1804	-	hypothetical protein
1794	 67.61	0	2028745..2029695	+	316	39934874	-	RPA1805	-	LysR family transcriptional regulator
1795	 70.89	+1	2029742..2031139	+	465	39934875	-	RPA1806	-	L-carnitine dehydratase/bile acid-inducible protein F
1796	 65.54	0	2031359..2032597	+	412	39934876	-	RPA1807	-	HlyD family heavy metal efflux protein
1797	 64.17	0	2032754..2035876	+	1040	39934877	czcA1	RPA1808	-	putative RND divalent metal cation efflux transporter CzcA
1798	 65.72	0	2036076..2036393	+	105	39934878	-	RPA1809	-	hypothetical protein
1799	 68.54	+1	2036488..2037930	-	480	39934879	-	RPA1810	-	putative outer membrane protein
1800	 63.72	0	2038105..2038884	-	259	39934880	-	RPA1811	-	enoyl-CoA hydratase/isomerase
1801	 69.65	+1	2038968..2039705	-	245	39934881	-	RPA1812	-	hypothetical protein
1802	 67.16	0	2039897..2040505	+	202	39934882	-	RPA1813	-	RNA polymerase sigma factor
1803	 69.77	+1	2040502..2041146	+	214	39934883	-	RPA1814	-	hypothetical protein
1804	 70.60	+1	2041227..2041607	+	126	39934884	-	RPA1815	-	hypothetical protein
1805	 64.38	0	2041668..2043896	+	742	39934885	-	RPA1816	-	putative outer membrane receptor for iron transport
1806	 65.77	0	2043919..2045028	-	369	39934886	-	RPA1817	-	hypothetical protein
1807	 63.18	0	2045066..2046355	-	429	39934887	-	RPA1818	-	putative diguanylate cyclase (GGDEF)
1808	 61.05	-1	2046600..2047169	+	189	39934888	-	RPA1819	-	RNA polymerase sigma factor
1809	 69.54	+1	2047166..2047999	+	277	39934889	-	RPA1820	-	hypothetical protein
1810	 66.47	0	2048486..2048995	+	169	39934890	-	RPA1821	-	hypothetical protein
1811	 64.44	0	2049434..2051500	+	688	39934891	-	RPA1822	-	methyl-accepting chemotaxis receptor/sensory transducer
1812	 65.38	0	2051982..2054615	+	877	39934892	-	RPA1823	-	TonB dependent receptor
1813	 64.34	0	2054711..2055226	+	171	39934893	-	RPA1824	-	hypothetical protein
1814	 60.83	-1	2055318..2055557	-	79	39934894	-	RPA1825	-	type IV pilus assembly PilZ
1815	 66.23	0	2055690..2057048	-	452	39934895	-	RPA1826	-	hypothetical protein
1816	 63.98	0	2057154..2057414	-	86	39934896	-	RPA1827	-	hypothetical protein
1817	 68.51	+1	2057481..2058131	-	216	39934897	-	RPA1828	-	peptidase C15, pyroglutamyl peptidase I
1818	 69.09	+1	2058128..2059117	-	329	39934898	argK	RPA1829	-	arginine/ornithine transport system ATPase
1819	 63.33	0	2059204..2059533	-	109	39934899	-	RPA1830	-	hypothetical protein
1820	 64.10	0	2059524..2059796	-	90	39934900	-	RPA1831	-	hypothetical protein
1821	 64.82	0	2059995..2060753	-	252	39934901	-	RPA1832	-	hypothetical protein
1822	 60.45	-1	2060841..2061242	-	133	39934902	-	RPA1833	-	PilT protein, N-terminal
1823	 58.91	-1	2061248..2061505	-	85	39934903	-	RPA1834	-	hypothetical protein
1824	 65.42	0	2061569..2063728	-	719	39934904	mutB	RPA1835	-	methylmalonyl-CoA mutase
1825	 66.24	0	2063791..2064255	-	154	39934905	-	RPA1836	-	glutathione-dependent formaldehyde-activating, GFA
1826	 70.03	+1	2064252..2066123	-	623	39934906	-	RPA1837	-	methylmalonyl-CoA mutase
1827	 68.29	0	2066281..2066772	-	163	39934907	folK	RPA1838	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1828	 64.48	0	2066774..2067139	-	121	39934908	folB	RPA1839	-	dihydroneopterin aldolase
1829	 67.48	0	2067136..2067993	-	285	39934909	folP	RPA1840	-	dihydropteroate synthase
1830	 60.78	-1	2068059..2068466	-	135	39934910	-	RPA1841	-	hypothetical protein
1831	 62.06	-1	2068484..2068852	-	122	39934911	-	RPA1842	-	hypothetical protein
1832	 64.99	0	2069189..2070799	+	536	39934912	-	RPA1843	-	hypothetical protein
1833	 64.46	0	2071008..2072414	+	468	39934913	-	RPA1844	-	hypothetical protein
1834	 65.36	0	2072749..2075049	+	766	39934914	-	RPA1845	-	putative tonB-dependent receptor protein
1835	 65.85	0	2075163..2075897	+	244	39934915	-	RPA1846	-	hypothetical protein
1836	 70.21	+1	2075894..2076175	+	93	39934916	-	RPA1847	-	hypothetical protein
1837	 65.71	0	2076237..2077811	+	524	39934917	-	RPA1848	-	hypothetical protein
1838	 67.01	0	2077808..2078095	+	95	39934918	-	RPA1849	-	hypothetical protein
1839	 64.46	0	2078135..2080132	-	665	39934919	-	RPA1850	-	methyl-accepting chemotaxis receptor/sensory transducer
1840	 64.90	0	2080588..2081661	-	357	39934920	-	RPA1851	-	hypothetical protein
1841	 62.83	0	2082702..2083118	+	138	39934921	mucR	RPA1852	-	MucR family transcriptional regulator
1842	 67.75	0	2083126..2083866	-	246	39934922	-	RPA1853	-	putative short-chain dehydrogenase
1843	 67.45	0	2083944..2084579	+	211	39934923	-	RPA1854	-	TetR family transcriptional regulator
1844	 69.12	+1	2084701..2085312	+	203	39934924	-	RPA1855	-	hypothetical protein
1845	 65.03	0	2085342..2085770	-	142	39934925	-	RPA1856	-	Fe-S metabolism associated SufE
1846	 65.01	0	2085886..2086308	-	140	39934926	-	RPA1857	-	hypothetical protein
1847	 65.74	0	2086715..2088547	+	610	39934927	-	RPA1858	-	sensor histidine kinase
1848	 70.10	+1	2088540..2089325	+	261	39934928	-	RPA1859	-	peptidoglycan-binding domain 1
1849	 63.16	0	2089478..2089819	+	113	39934929	-	RPA1860	-	hypothetical protein
1850	 67.18	0	2089994..2090968	-	324	39934930	-	RPA1861	-	hypothetical protein
1851	 66.85	0	2091120..2092193	-	357	39934931	-	RPA1862	-	polysaccharide deacetylase
1852	 66.48	0	2092273..2092803	-	176	39934932	-	RPA1863	-	hypothetical protein
1853	 66.79	0	2093201..2093983	+	260	39934933	-	RPA1864	-	hypothetical protein
1854	 66.14	0	2093990..2094556	-	188	39934934	-	RPA1865	-	hypothetical protein
1855	 70.47	+1	2094553..2095131	-	192	39934935	-	RPA1866	-	hypothetical protein
1856	 66.49	0	2095175..2097448	-	757	39934936	-	RPA1867	-	penicillin-binding protein 1A
1857	 66.83	0	2097623..2098231	+	202	39934937	-	RPA1868	-	hypothetical protein
1858	 68.15	0	2098286..2099029	+	247	39934938	-	RPA1869	-	hypothetical protein
1859	 63.57	0	2099324..2099839	-	171	39934939	-	RPA1870	-	MarR family transcriptional regulator
1860	 66.99	0	2099919..2101157	+	412	39934940	-	RPA1871	-	putative cytochrome P450
1861	 63.55	0	2101167..2101487	+	106	39934941	thcC	RPA1872	-	rhodocoxin
1862	 64.20	0	2101563..2102777	+	404	39934942	-	RPA1873	-	urea/short-chain binding protein of ABC transporter
1863	 66.18	0	2102977..2103183	-	68	39934943	-	RPA1874	-	hypothetical protein
1864	 64.83	0	2103180..2104325	-	381	39934944	-	RPA1875	-	hypothetical protein
1865	 65.19	0	2104322..2106625	-	767	39934945	-	RPA1876	-	putative TonB-dependent iron siderophore receptor
1866	 63.80	0	2107191..2108096	+	301	39934946	-	RPA1877	-	hypothetical protein
1867	 64.88	0	2108394..2109569	-	391	39934947	-	RPA1878	-	putative 6-aminohexanoate-dimer hydrolase
1868	 63.01	0	2109685..2110752	-	355	39934948	-	RPA1879	-	choloylglycine hydrolase
1869	 66.06	0	2110908..2112551	+	547	39934949	-	RPA1880	-	MFS family transporter
1870	 67.02	0	2112675..2114075	+	466	39934950	-	RPA1881	-	hypothetical protein
1871	 61.98	-1	2114160..2114351	+	63	39934951	-	RPA1882	-	Flp/Fap pilin component
1872	 61.90	-1	2114647..2116200	+	517	39934952	-	RPA1883	-	hypothetical protein
1873	 61.61	-1	2116794..2118473	+	559	39934953	-	RPA1884	-	methyl-accepting chemotaxis receptor/sensory transducer
1874	 66.07	0	2118613..2119788	+	391	161610774	-	RPA1885	-	portal protein
1875	 64.18	0	2119814..2120014	+	66	39934955	-	RPA1886	-	hypothetical protein
1876	 73.60	+2	2120319..2120996	+	225	39934956	-	RPA1887	-	phage protease
1877	 69.70	+1	2121168..2122421	+	417	39934957	-	RPA1888	-	major capsid protein
1878	 58.33	-2	2122753..2123124	+	123	39934958	-	RPA1889	-	hypothetical protein
1879	 49.58	-2	2123340..2126441	-	1033	39934959	-	RPA1890	-	hypothetical protein
1880	 73.15	+2	2127296..2128252	+	318	39934960	-	RPA1891	-	hypothetical protein
1881	 73.04	+2	2128329..2129489	+	386	39934961	-	RPA1892	-	terminase GTA
65.23	MEAN

3.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.