version 1.0
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213 4813 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 69 65.35 0 74840..76054 + 404 39933149 trpB RPA0069 - tryptophan synthase subunit beta 70 68.34 0 76054..76890 + 278 39933150 trpA RPA0070 - tryptophan synthase subunit alpha 71 66.67 0 77000..77983 + 327 39933151 accD RPA0071 - acetyl-CoA carboxylase subunit beta 72 69.75 +1 77980..79308 + 442 39933152 folC RPA0072 - FolC bifunctional protein 73 63.55 0 79484..79804 - 106 39933153 trxA RPA0073 - thioredoxin 74 68.47 +1 79901..83386 - 1161 39933154 - RPA0074 - UvrD/REP helicase 75 68.67 +1 83383..86532 - 1049 39933155 - RPA0075 - hypothetical protein 76 67.22 0 86608..87330 - 240 39933156 - RPA0076 - nucleotidyl transferase 77 62.46 0 87488..87796 - 102 39933157 - RPA0077 - hypothetical protein 78 68.24 0 87900..89420 - 506 39933158 - RPA0078 - hypothetical protein 79 66.43 0 89417..91963 - 848 39933159 - RPA0079 - sensor histidine kinase 80 68.85 +1 92150..92608 - 152 39933160 dut RPA0080 - putative deoxyuridine 5'triphosphate nucleotidohydrolase 81 69.93 +1 92605..93951 - 448 39933161 coaBC RPA0081 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 82 67.43 0 94104..95681 - 525 39933162 ubiB RPA0082 - 2-polyprenylphenol 6-hydroxylase 83 62.47 0 95678..96439 - 253 39933163 ubiE RPA0083 - ubiquinone/menaquinone biosynthesis methyltransferase 84 67.12 0 96685..97560 + 291 39933164 mutM RPA0084 - formamidopyrimidine-DNA glycosylase 85 67.56 0 97588..98931 - 447 39933165 - RPA0085 - peptidoglycan-binding domain 1 86 67.67 0 99139..99939 + 266 39933166 moeB RPA0086 - putative molybdenum cofactor biosynthesis protein 87 69.15 +1 100064..101752 + 562 39933167 - RPA0087 - major facilitator transporter 88 64.84 0 101883..102101 - 72 39933168 - RPA0088 - hypothetical protein 89 57.89 -2 102225..102566 - 113 39933169 - RPA0089 - hypothetical protein 90 63.70 0 102804..103208 - 134 39933170 - RPA0090 - hypothetical protein 91 66.37 0 103287..103628 - 113 39933171 - RPA0091 - hypothetical protein 92 60.14 -1 104169..104444 - 91 39933172 - RPA0092 - hypothetical protein 93 64.81 0 104575..105222 + 215 39933173 - RPA0093 - TetR family transcriptional regulator 94 68.19 0 105219..106136 + 305 39933174 - RPA0094 - hypothetical protein 95 69.81 +1 106266..107411 + 381 39933175 - RPA0095 - putative multidrug efflux membrane fusion protein 96 66.29 0 107415..110564 + 1049 39933176 - RPA0096 - putative multidrug-efflux transport protein 97 67.88 0 110707..111117 + 136 39933177 - RPA0097 - putative flagellar basal-body rod protein flgC 98 67.42 0 111260..112318 - 352 39933178 oppF RPA0098 - oligopeptide ABC transporter ATP-binding protein 99 67.37 0 112315..113313 - 332 39933179 oppD RPA0099 - putative oligopeptide ABC transporter ATP-binding protein 100 68.59 +1 113316..114197 - 293 39933180 oppC RPA0100 - putative ABC transporter permease protein 101 65.65 0 114221..115201 - 326 39933181 oppB RPA0101 - putative dipeptide transport system permease protein 1 102 62.30 0 115230..116831 - 533 39933182 oppA RPA0102 - putative ABC transporter oligopeptide-binding protein 103 66.04 0 116921..117877 - 318 39933183 - RPA0103 - cobalamin synthesis protein/P47K 104 65.45 0 117874..119517 - 547 39933184 - RPA0104 - amidohydrolase 105 64.33 0 119756..121297 + 513 39933185 - RPA0105 - transcriptional regulator 106 63.52 0 121313..122521 - 402 39933186 - RPA0106 - branched chain amino-acid ABC transporter substrate-binding protein 107 68.59 +1 122541..123581 - 346 39933187 - RPA0107 - putative Zn-binding dehydrogenase 108 66.78 0 123611..125359 - 582 39933188 - RPA0108 - benzaldehyde lyase 109 66.16 0 125400..126188 - 262 39933189 - RPA0109 - putative 3-oxoacyl-(acyl carrier ptn) reductase 110 63.35 0 126389..127051 + 220 39933190 - RPA0110 - TetR family transcriptional regulator 111 69.07 +1 127104..127892 - 262 39933191 - RPA0111 - hypothetical protein 112 66.01 0 127901..129412 - 503 39933192 betB RPA0112 - putative betaine aldehyde dehydrogenase 113 66.59 0 130028..131422 + 464 39933193 - RPA0113 - putative oxidoreductase 114 65.25 0 131546..131899 - 117 39933194 - RPA0114 - hypothetical protein 115 60.93 -1 133329..133886 + 185 39933195 rmlC RPA0118 - dTDP-6-deoxy-D-glucose-3,5-epimerase 116 67.45 0 133891..134784 + 297 39933196 rmlD RPA0119 - putative dTDP-6-deoxy-L-mannose-dehydrogenase 117 63.13 0 134786..135661 + 291 39933197 rmlA RPA0120 - glucose-1-phosphate thymidylyltransferase 118 66.11 0 136107..136643 + 178 39933198 - RPA0121 - hypothetical protein 119 68.33 0 136734..139013 + 759 39933199 phyB3 RPA0122 - bacteriophytochrome PhyB 120 67.64 0 139006..140646 + 546 39933200 - RPA0123 - KTN NAD-binding domain-containing protein 121 66.18 0 140653..141477 - 274 39933201 - RPA0124 - 3',5'-cyclic-nucleotide phosphodiesterase, cpdA 122 64.00 0 141474..142298 - 274 39933202 - RPA0125 - 3',5'-cyclic-nucleotide phosphodiesterase, cpdA 123 63.70 0 142363..143643 - 426 39933203 - RPA0126 - sugar binding protein of ABC transporter 124 64.52 0 143666..144502 - 278 39933204 - RPA0127 - putative permease protein of sugar ABC transporter 125 65.00 0 144499..145458 - 319 39933205 - RPA0128 - sugar ABC transporter permease 126 67.53 0 145451..146605 - 384 39933206 - RPA0129 - putative sugar binding protein of ABC transporter 127 67.92 0 146733..147611 + 292 39933207 - RPA0130 - LysR family transcriptional regulator 128 69.11 +1 147617..148312 - 231 39933208 - RPA0131 - ABC sulfate transport system, ATP-binding protein 129 72.61 +2 148309..149082 - 257 39933209 - RPA0132 - ABC sulfonate transport system, permease protein 130 69.89 +1 149072..150064 - 330 39933210 - RPA0133 - ABC sulfate transport system, periplasmic binding protein 131 66.40 0 150080..151939 - 619 39933211 hydC RPA0134 - hydrogenase gamma-fused hydrogenase large and small subunit 132 66.57 0 151939..153960 - 673 39933212 - RPA0135 - oxidoreductase 133 65.56 0 154100..155809 - 569 39933213 - RPA0136 - methyl-accepting chemotaxis receptor/sensory transducer 134 66.12 0 155814..156905 - 363 39933214 cheB1 RPA0137 - chemotaxis methylesterase, CheB1 135 59.55 -1 156926..157768 - 280 39933215 cheR1 RPA0138 - chemotaxis methyltransferase, CheR1 136 65.17 0 157930..160131 - 733 39933216 - RPA0139 - methyl-accepting chemotaxis receptor/sensory transducer 137 65.64 0 160198..160686 - 162 39933217 cheW1-3 RPA0140 - chemotaxis signal transduction/oligomerization protein CheW1-2 138 63.06 0 160747..161217 - 156 39933218 cheW1-1 RPA0141 - chemotaxis signal transduction/oligomerization protein CheW1-1 139 65.84 0 161217..163283 - 688 39933219 cheA1 RPA0142 - chemotaxis histidine kinase CheA 140 63.93 0 163280..163645 - 121 39933220 cheY1 RPA0143 - response regulator receiver, CheY1 141 58.33 -2 163645..163968 - 107 39933221 - RPA0144 - sulfate transporter 142 63.58 0 164246..165412 + 388 39933222 - RPA0145 - metal dependent phosphohydrolase domain-containing protein 143 61.81 -1 165452..165883 + 143 39933223 - RPA0146 - hypothetical protein 144 63.89 0 165961..166752 - 263 39933224 - RPA0147 - ModE family transcriptional regulator 145 68.53 +1 166873..167409 - 178 39933225 - RPA0148 - hypothetical protein 146 67.30 0 167433..168227 - 264 39933226 - RPA0149 - iron ABC transporter ATP-binding protein 147 68.72 +1 168224..169246 - 340 39933227 - RPA0150 - iron ABC transporter permease 148 65.62 0 169248..170297 - 349 39933228 - RPA0151 - iron ABC transporter periplasmic binding protein 149 68.65 +1 170294..170797 - 167 39933229 - RPA0152 - hypothetical protein 150 60.30 -1 171435..173618 + 727 39933230 - RPA0153 - outer membrane receptor for Fe transport 151 68.70 +1 173675..174313 + 212 39933231 - RPA0154 - MotA/TolQ/ExbB proton channel family protein 152 68.59 +1 174326..174793 + 155 39933232 - RPA0155 - putative tolR/exbD protein 153 67.03 0 174790..175608 + 272 39933233 - RPA0156 - tonB like protein 154 64.86 0 175963..177126 - 387 39933234 - RPA0157 - hypothetical protein 155 65.62 0 177448..177828 + 126 39933235 rplU RPA0158 - 50S ribosomal protein L21 156 63.00 0 177918..178190 + 90 39933236 rpmA RPA0159 - 50S ribosomal protein L27 157 65.67 0 178325..178924 + 199 39933237 - RPA0160 - GCN5-related N-acetyltransferase 158 67.00 0 179631..180536 - 301 39933238 - RPA0161 - DMT family permease 159 64.97 0 180688..181749 + 353 39933239 obgE RPA0162 - GTPase ObgE 160 67.90 0 181888..183018 + 376 39933240 proB RPA0163 - gamma-glutamyl kinase 161 66.51 0 183222..184514 + 430 39933241 proA RPA0164 - gamma-glutamyl phosphate reductase 162 65.87 0 184539..185168 + 209 39933242 nadD RPA0165 - nicotinic acid mononucleotide adenylyltransferase 163 63.97 0 185539..185835 + 98 39933243 - RPA0166 - Iojap-related protein 164 65.01 0 185925..186407 + 160 39933244 - RPA0167 - hypothetical protein 165 69.11 +1 186427..187818 + 463 39933245 - RPA0168 - peptidase M23B 166 65.43 0 187815..189191 + 458 39933246 ctpA RPA0169 - carboxyl-terminal protease 167 67.39 0 189342..190580 + 412 39933247 - RPA0170 - hypothetical protein 168 65.48 0 190619..191125 + 168 39933248 invA1 RPA0171 - dinucleoside polyphosphate hydrolase 65.23 MEAN 3.17 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0