version 1.0
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213 4813 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 956 68.96 +1 1061498..1062499 + 333 39934036 hupU RPA0959 - uptake hydrogenase accessory protein hupU 957 63.79 0 1064173..1065285 + 370 39934037 hupS RPA0962 - hydrogenase small chain 958 63.82 0 1065304..1067097 + 597 39934038 hupL RPA0963 - hydrogenase large chain 959 59.67 -1 1067114..1067842 + 242 39934039 hupC RPA0964 - Ni/Fe-hydrogenase 1 B-type cytochrome subunit 960 65.44 0 1067904..1068557 + 217 39934040 hupD RPA0965 - hydrogenase maturation protein hupD 961 72.22 +2 1068571..1069164 + 197 39934041 hupE RPA0966 - putative membrane-bound hydrogenase component hupE 962 67.33 0 1069185..1069487 + 100 39934042 hupF RPA0967 - hydrogenase expression/formation protein hupF 963 68.16 0 1069708..1070109 + 133 39934043 hupG RPA0968 - putative hydrogenase expression/formation protein hupG 964 67.01 0 1070106..1070972 + 288 39934044 hupH RPA0969 - hydrogenase expression/formation protein hupH 965 69.01 +1 1070969..1071181 + 70 39934045 hupI RPA0970 - putative rubredoxin hupI 966 70.10 +1 1071171..1071695 + 174 39934046 hupJ RPA0971 - putative hydrogenase expression/formation protein hupJ 967 69.55 +1 1071692..1072801 + 369 39934047 hupK RPA0972 - putative hydrogenase expression/formation protein hupK 968 65.20 0 1072794..1073135 + 113 39934048 hypA RPA0973 - hydrogenase formation/expression protein hypA 969 63.74 0 1073135..1074091 + 318 39934049 hypB RPA0974 - hydrogenase expression/formation protein hypB 970 69.96 +1 1074096..1076369 + 757 39934050 hypF RPA0975 - hydrogenase maturation protein hypF 971 67.95 0 1076369..1076602 + 77 39934051 hypC RPA0976 - putative hypC 972 66.93 0 1076599..1077741 + 380 39934052 hypD RPA0977 - hydrogenase expression/formation protein hypD 973 69.15 +1 1077738..1078784 + 348 39934053 hypE RPA0978 - hydrogenase expression/formation protein hypE 974 64.87 0 1078825..1080273 + 482 39934054 hoxA RPA0979 - two component sigma-54-dependent hydrogenase transcriptional regulator hoxA 975 65.48 0 1080263..1081615 + 450 39934055 - RPA0980 - sensor histidine kinase 976 65.79 0 1081721..1084108 + 795 39934056 - RPA0981 - sensor histidine kinase 977 66.16 0 1084132..1084923 - 263 39934057 pcaR RPA0982 - transcriptional regulator PcaR 978 65.78 0 1085284..1086642 + 452 39934058 - RPA0983 - phthalate dioxygenase 979 64.89 0 1086639..1088099 + 486 39934059 glnA4 RPA0984 - putative glutamine synthetase-like protein 980 62.57 0 1088146..1089318 + 390 39934060 - RPA0985 - putative branched-chain amino acid transport system substrate-binding protein 981 63.32 0 1089530..1090396 + 288 39934061 - RPA0986 - urea/short-chain amide transport system permease protein 982 66.57 0 1090399..1091397 + 332 39934062 - RPA0987 - branched chain amino acid ABC transporter permease 983 65.10 0 1091394..1092158 + 254 39934063 - RPA0988 - putative branched-chain amino acid ABC transporter, ATP-binding protein 984 67.79 0 1092139..1092852 + 237 39934064 - RPA0989 - putative ATP-binding component of ABC transporter 985 65.45 0 1092866..1095403 - 845 39934065 phyB5 RPA0990 - bacteriophytochrome PhyB 986 64.63 0 1095619..1096404 + 261 39934066 - RPA0991 - Crp/FNR family transcriptional regulator 987 62.30 0 1096426..1097157 - 243 39934067 - RPA0992 - Crp/FNR family transcriptional regulator 988 66.67 0 1097324..1097899 + 191 39934068 - RPA0993 - alpha-ribazole-5`-phosphate phosphatase CobC 989 61.31 -1 1098342..1098677 + 111 39934069 - RPA0994 - hypothetical protein 990 63.70 0 1098742..1099887 - 381 39934070 - RPA0995 - acyl-CoA dehydrogenase 991 65.49 0 1100262..1101284 - 340 39934071 - RPA0996 - Alpha/beta hydrolase fold 992 65.03 0 1101329..1101757 + 142 39934072 - RPA0997 - ArsR family transcriptional regulator 993 67.45 0 1101771..1102151 - 126 39934073 - RPA0998 - rhodanese-like protein 994 64.07 0 1102360..1102974 + 204 39934074 PA5115 RPA0999 - hypothetical protein 995 66.41 0 1102982..1103377 - 131 39934075 - RPA1000 - nitrogenase-associated protein 996 68.19 0 1103391..1103981 - 196 39934076 - RPA1001 - hypothetical protein 997 70.78 +1 1104195..1105070 + 291 39934077 modD RPA1002 - pyrophosphorylase ModD 998 66.36 0 1105201..1106835 - 544 39934078 - RPA1003 - putative acyl-CoA synthase 999 65.70 0 1107079..1107285 + 68 39934079 - RPA1004 - hypothetical protein 1000 65.90 0 1107364..1108014 + 216 39934080 - RPA1005 - NUDIX hydrolase 1001 64.18 0 1108128..1108529 + 133 39934081 - RPA1006 - protocatechuate 4,5-dioxygenase subunit alpha 1002 65.27 0 1108545..1109402 + 285 39934082 mhpB RPA1007 - protocatechuate 4,5-dioxygenase subunit beta 1003 65.88 0 1109469..1110359 - 296 39934083 - RPA1008 - AraC family transcriptional regulator 1004 66.16 0 1110510..1111697 + 395 39934084 - RPA1009 - cytochrome P450 1005 65.54 0 1111734..1113680 - 648 39934085 - RPA1010 - Beta-lactamase-like protein 1006 64.37 0 1113940..1114593 + 217 39934086 - RPA1011 - DSBA oxidoreductase 1007 64.44 0 1114724..1115488 + 254 39934087 - RPA1012 - integral membrane protein 1008 64.86 0 1115514..1116956 - 480 39934088 fixG RPA1013 - nitrogen fixation protein FixG 1009 60.54 -1 1117075..1117368 - 97 39934089 - RPA1014 - hypothetical protein 1010 67.17 0 1117580..1118170 + 196 39934090 - RPA1015 - PadR family transcriptional regulator 1011 66.67 0 1118259..1118792 + 177 39934091 petA RPA1016 - ubiquinol-cytochrome-c reductase, Rieske iron-sulfur protein 1012 66.67 0 1119042..1119434 + 130 39934092 - RPA1017 - nitrogen fixation-related protein 1013 62.69 0 1119616..1119816 - 66 39934093 - RPA1018 - hypothetical protein 1014 63.45 0 1119897..1120238 + 113 39934094 - RPA1019 - NolR/HlyU transcriptional regulator 1015 66.67 0 1120240..1121235 + 331 39934095 - RPA1020 - secretion protein HlyD 1016 65.58 0 1121232..1124456 + 1074 39934096 - RPA1021 - AcrB/AcrD/AcrF family transporter 1017 64.68 0 1124518..1125171 + 217 39934097 - RPA1022 - outer membrane protein 1018 66.03 0 1125380..1125691 + 103 39934098 - RPA1023 - hypothetical protein 1019 67.46 0 1125696..1126958 + 420 39934099 - RPA1024 - putative oxidoreductase 1020 63.93 0 1126955..1127320 + 121 39934100 - RPA1025 - cytochrome b5 1021 62.33 0 1127420..1128550 - 376 39934101 - RPA1026 - DNA methylase N-4/N-6 1022 65.90 0 1128929..1129846 + 305 39934102 - RPA1027 - hypothetical protein 1023 64.66 0 1129985..1130533 + 182 39934103 moaB RPA1028 - molybdopterin biosynthesis, protein B 1024 66.80 0 1130697..1131464 + 255 39934104 - RPA1029 - CoA transferase, subunit A 1025 66.67 0 1131461..1132213 + 250 39934105 - RPA1030 - CoA transferase, subunit B 1026 66.67 0 1132371..1133378 - 335 39934106 - RPA1031 - MarR family transcriptional regulator 1027 70.90 +1 1133477..1134043 - 188 39934107 - RPA1032 - glycosyl transferase family protein 1028 66.06 0 1134224..1135384 + 386 39934108 - RPA1033 - radical SAM family protein 1029 67.87 0 1135479..1136393 + 304 39934109 rnh2 RPA1034 - ribonuclease H 1030 69.95 +1 1136390..1137973 + 527 39934110 - RPA1035 - hypothetical protein 1031 70.76 +1 1138032..1138862 - 276 39934111 polN RPA1036 - phage SPO1 DNA polymerase-related protein 1032 63.53 0 1139064..1140722 + 552 39934112 - RPA1037 - electron-transferring-flavoprotein dehydrogenase 1033 64.65 0 1140980..1142764 + 594 39934113 - RPA1038 - TPR repeat-containing protein 1034 71.89 +2 1142869..1143768 + 299 39934114 ispE RPA1039 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase 1035 66.17 0 1143914..1144924 - 336 39934115 - RPA1040 - farnesyltranstransferase 1036 66.67 0 1145132..1145359 + 75 39934116 - RPA1041 - hypothetical protein 1037 69.49 +1 1145352..1146131 + 259 39934117 - RPA1042 - methyltransferase small 1038 66.45 0 1146377..1147279 + 300 39934118 - RPA1043 - peptidase S49 1039 68.27 0 1147380..1147691 - 103 39934119 - RPA1044 - hypothetical protein 1040 64.77 0 1147992..1148942 + 316 39934120 glyQ RPA1045 - glycyl-tRNA synthetase subunit alpha 1041 60.46 -1 1149072..1149506 + 144 39934121 - RPA1046 - hypothetical protein 1042 61.35 -1 1149506..1151836 + 776 39934122 glyS RPA1047 - glycyl-tRNA synthetase subunit beta 1043 67.30 0 1152596..1153699 + 367 39934123 - RPA1048 - hypothetical protein 1044 67.60 0 1153713..1155209 - 498 39934124 - RPA1049 - hypothetical protein 1045 53.85 -2 1155473..1155628 + 51 39934125 - RPA1050 - hypothetical protein 1046 67.14 0 1156005..1158746 + 913 39934126 - RPA1051 - pyruvate phosphate dikinase 1047 66.74 0 1159062..1160492 + 476 39934127 - RPA1052 - cell wall hydrolase, SleB 1048 68.26 0 1161049..1161924 - 291 39934128 nadC RPA1053 - nicotinate-nucleotide pyrophosphorylase 1049 71.06 +1 1161941..1163557 - 538 39934129 nadB RPA1054 - L-aspartate oxidase 1050 64.24 0 1163651..1164763 - 370 39934130 nadA RPA1055 - quinolinate synthetase 1051 66.46 0 1165116..1166102 + 328 39934131 - RPA1056 - putative dehydrogenase (zinc-binding alcohol dehydrogenase, NADPH quinone oxidoreductase, oxidoreductase) 1052 65.44 0 1166217..1166786 + 189 39934132 - RPA1057 - hypothetical protein 1053 66.03 0 1167398..1168333 + 311 39934133 - RPA1058 - AraC family transcriptional regulator 1054 62.56 0 1168419..1170635 + 738 39934134 - RPA1059 - outer membrane protein, TonB-dependent receptor 1055 64.19 0 1170643..1171086 + 147 39934135 - RPA1060 - hypothetical protein 65.23 MEAN 3.17 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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