IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.51   STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
869	 65.73	+1	930487..931338	+	283	116250635	-	RL0862	-	LysR family transcriptional regulator
870	 64.41	0	931352..932194	-	280	116250636	-	RL0863	-	LysR family transcriptional regulator
871	 64.65	0	932409..933848	+	479	116250637	glcD	RL0864	-	putative glycolate oxidase subunit
872	 67.67	+1	933845..935044	+	399	116250638	glcE	RL0865	-	putative glycolate oxidase subunit
873	 64.76	0	935101..936411	+	436	116250639	glcF	RL0866	-	putative glycolate oxidase iron-sulfur subunit
874	 60.09	0	936477..936917	+	146	116250640	-	RL0867	-	hypothetical protein
875	 60.15	0	936939..937613	-	224	116250641	-	RL0868	-	lipid A oxidase
876	 63.20	0	937733..938425	-	230	116250642	-	RL0869	-	putative exported ErfK/YbiS/YhnG protein
877	 65.33	+1	938664..939410	-	248	116250643	-	RL0870	-	putative ErfK/YbiS/YhnG family protein
878	 59.37	0	939664..940293	+	209	116250644	tag	RL0871	-	putative DNA-3-methyladenine glycosylase I
879	 63.01	0	940305..940796	+	163	116250645	-	RL0872	-	hypothetical protein
880	 60.28	0	940816..941520	-	234	116250646	-	RL0873	-	putative haloacid dehydrogenase hydrolase
881	 63.05	0	941749..942798	+	349	116250647	-	RL0874	-	putative aldo/keto reductase
882	 56.76	-1	942866..943279	-	137	116250648	-	RL0875	-	hypothetical protein
883	 64.30	0	943720..944481	-	253	116250650	-	RL0876	-	hypothetical protein
884	 62.98	0	944612..946183	+	523	116250651	hisS	RL0877	-	histidyl-tRNA synthetase
885	 64.80	+1	946364..947485	+	373	116250652	hisZ	RL0878	-	ATP phosphoribosyltransferase regulatory subunit
886	 64.22	0	947482..948177	+	231	116250653	hisG	RL0879	-	ATP phosphoribosyltransferase catalytic subunit
887	 63.01	0	948256..948693	-	145	116250654	-	RL0880	-	putative transmembrane quinol oxidase subunit
888	 58.65	0	949008..949718	+	236	116250655	-	RL0881	-	putative glutathione S-transferase
889	 57.05	-1	949782..950228	-	148	116250656	-	RL0882	-	hypothetical protein
890	 60.28	0	950963..952606	-	547	116250657	groEL	RL0883	-	chaperonin GroEL
891	 61.62	0	952679..952975	-	98	116250658	groS	RL0884	-	putative 10 kDa chaperonin (protein cpn10)
892	 63.37	0	953370..954218	+	282	116250659	-	RL0885	-	putative hydrolase
893	 61.59	0	954249..955232	+	327	116250660	ribF	RL0886	-	bifunctional riboflavin kinase/FMN adenylyltransferase
894	 58.17	-1	955245..955703	-	152	116250661	-	RL0887	-	putative plasmid stability-like protein
895	 58.33	0	955700..955963	-	87	116250662	-	RL0888	-	hypothetical protein
896	 61.21	0	956316..959264	+	982	116250663	ileS	RL0889	-	isoleucyl-tRNA synthetase
897	 61.64	0	959271..960026	+	251	116250664	-	RL0890	-	hypothetical protein
898	 63.16	0	960076..960531	-	151	116250665	-	RL0891	-	putative nitrogen fixation symbiosis related protein
899	 69.09	+2	960604..962709	+	701	116250666	-	RL0892	-	putative ribosomal large subunit pseudouridine synthase B
900	 63.64	0	962690..963250	+	186	116250667	-	RL0893	-	hypothetical protein
901	 64.17	0	963263..964144	+	293	116250668	-	RL0894	-	putative patatin family protein
902	 63.36	0	964158..964610	-	150	116250669	-	RL0895	-	hypothetical protein
903	 61.57	0	964624..965997	-	457	116250670	-	RL0896	-	putative transmembrane transporter
904	 63.97	0	966087..966494	-	135	116250671	-	RL0897	-	hypothetical protein
905	 65.23	+1	966586..968400	-	604	116250672	-	RL0898	-	putative glutathione-regulated cation-efflux system protein
906	 64.07	0	968519..969865	+	448	116250673	-	RL0899	-	putative maturation protein
907	 64.32	0	969882..970691	+	269	116250674	-	RL0900	-	putative inositol monophosphate family protein
908	 55.12	-1	970660..970962	-	100	116250675	-	RL0901	-	hypothetical protein
909	 64.92	+1	971171..972490	+	439	116250676	-	RL0902	-	3-deoxy-D-manno-octulosonic-acid transferase
910	 65.28	+1	972500..973222	+	240	116250677	gph	RL0903	-	putative phosphoglycolate phosphatase
911	 65.55	+1	973405..974478	+	357	116250678	lpxK	RL0904	-	tetraacyldisaccharide 4'-kinase
912	 54.58	-2	974801..975685	-	294	116250679	-	RL0905	-	GntR family transcriptional regulator
913	 58.64	0	975785..976843	+	352	116250680	-	RL0906	-	putative transmembrane component of ABC transporter
914	 59.08	0	976840..977604	+	254	116250681	-	RL0907	-	putative ATP-binding component of ABC transporter
915	 58.39	0	977683..978600	+	305	116250682	-	RL0908	-	putative solute-binding component of ABC transporter
916	 58.27	0	978735..979115	-	126	116250683	-	RL0909	-	hypothetical protein
917	 66.61	+1	979136..980938	-	600	116250684	mutL	RL0910	-	DNA mismatch repair protein
918	 61.44	0	981122..982843	+	573	116250685	-	RL0911	-	putative two-component sensor histidine kinase transcriptional regulatory protein
919	 62.34	0	982997..984361	+	454	116250686	-	RL0912	-	putative GGDEF/EAL sensory box protein
920	 62.21	0	984436..985041	-	201	116250687	-	RL0913	-	putative PRC family protein
921	 61.60	0	985276..986163	-	295	116250688	-	RL0914	-	hypothetical protein
922	 64.64	0	986160..986801	-	213	116250689	dgoA	RL0915	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
923	 67.97	+1	986815..987732	-	305	116250690	dgoK	RL0916	-	putative 2-dehydro-3-deoxygalactonokinase
924	 64.18	0	987732..988496	-	254	116250691	-	RL0917	-	putative nodulation protein, 3-oxoacyl-(Acyl carrier protein) reductase
925	 62.91	0	988608..989405	+	265	116250692	-	RL0918	-	IclR family transcriptional regulator
926	 60.43	0	989655..990392	+	245	116250693	-	RL0919	-	LuxR/GerE family transcriptional regulator
927	 65.55	+1	990927..992087	+	386	116250694	-	RL0920	-	putative ATP-binding mrp family protein
928	 58.76	0	992513..993511	+	332	116250695	-	RL0921	-	putative cationic transport protein
929	 61.72	0	993530..995428	+	632	116250696	kup	RL0922	-	putative potassium uptake transport system protein
930	 62.52	0	995728..996957	+	409	116250697	-	RL0923	-	putative hydrolase
931	 57.96	-1	997229..997561	+	110	116250698	atpI	RL0924	-	putative ATP synthase protein I
932	 56.57	-1	997624..998376	+	250	116250699	atpB	RL0925	-	F0F1 ATP synthase subunit A
933	 60.96	0	998444..998671	+	75	116250700	atpC	RL0926	-	F0F1 ATP synthase subunit C
934	 65.54	+1	998749..999372	+	207	116250701	atpG	RL0927	-	F0F1 ATP synthase subunit B'
935	 62.37	0	999376..999864	+	162	116250702	atpF	RL0928	-	F0F1 ATP synthase subunit B
936	 61.30	0	999938..1000291	-	117	116250703	-	RL0929	-	hypothetical protein
937	 66.09	+1	1000331..1001020	-	229	116250704	rnhB	RL0930	-	ribonuclease HII
938	 63.30	0	1001303..1002460	-	385	116250705	-	RL0931	-	hypothetical protein
939	 65.13	+1	1002600..1003118	+	172	116250706	-	RL0932	-	hypothetical protein
940	 57.74	-1	1003303..1003638	+	111	116250707	-	RL0933	-	putative transmembrane protein
941	 63.41	0	1003662..1004213	-	183	116250708	moaB	RL0934	-	putative molybdenum cofactor biosynthesis protein
942	 66.23	+1	1004213..1005124	-	303	116250709	-	RL0935	-	putative kinase
943	 63.12	0	1005182..1007014	-	610	116250710	-	RL0936	-	TPR repeat-containing protein
944	 60.87	0	1007149..1008165	-	338	116250711	ispB	RL0937	-	putative octaprenyl-diphosphate synthase
945	 61.11	0	1008214..1008501	+	95	116250712	-	RL0938	-	hypothetical protein
946	 65.63	+1	1008508..1009278	+	256	116250713	-	RL0939	-	hypothetical protein
947	 63.91	0	1009308..1010648	-	446	116250714	mntH	RL0940	-	manganese transport protein MntH
948	 62.60	0	1010819..1011679	+	286	116250715	-	RL0941	-	putative peptidase
949	 61.46	0	1011698..1011889	+	63	116250716	-	RL0942	-	putative transmembrane protein
950	 62.49	0	1012162..1013118	+	318	116250717	glyQ	RL0943	-	glycyl-tRNA synthetase subunit alpha
951	 61.41	0	1013258..1013809	+	183	116250718	-	RL0944	-	putative LemA like outer membrane protein
952	 65.56	+1	1013898..1015160	+	420	116250719	aroA	RL0945	-	putative 3-phosphoshikimate 1-carboxyvinyltransferase
953	 62.17	0	1015197..1017131	+	644	116250720	-	RL0946	-	putative transmembrane protein
954	 64.32	0	1017197..1018474	+	425	116250721	purD	RL0947	-	phosphoribosylamine--glycine ligase
955	 62.58	0	1018571..1019035	+	154	116250722	-	RL0948	-	hypothetical protein
956	 62.01	0	1019449..1021272	+	607	116250723	-	RL0949	-	putative methyl-accepting chemotaxis protein
957	 66.26	+1	1021352..1021840	-	162	116250724	-	RL0950	-	hypothetical protein
958	 64.59	0	1021899..1024013	-	704	116250725	glyS	RL0951	-	glycyl-tRNA synthetase subunit beta
959	 66.06	+1	1024233..1026542	+	769	116250726	-	RL0952	-	transcriptional regulator
960	 58.57	0	1026676..1027935	+	419	116250727	cfa	RL0953	-	putative cyclopropane-fatty-acyl-phospholipid synthase
961	 65.12	+1	1028003..1028584	+	193	116250728	gpmB	RL0954	-	putative phosphoglycerate mutase
962	 63.84	0	1028986..1029798	+	270	116250729	-	RL0955	-	MipA family outer membrane scaffold protein
963	 62.19	0	1029958..1030917	+	319	116250730	ubiA	RL0956	-	prenyltransferase
964	 63.67	0	1031003..1031569	-	188	116250731	-	RL0957	-	hypothetical protein
965	 58.32	0	1031870..1035199	+	1109	116250732	-	RL0958	-	hypothetical protein
966	 63.80	0	1035218..1036648	-	476	116250733	-	RL0959	-	putative FAD binding oxidoreductase
967	 68.21	+2	1036681..1037655	-	324	116250734	-	RL0960	-	putative Sua5 family protein
968	 60.10	0	1037796..1038404	-	202	116250735	-	RL0961	-	hypothetical protein
61.51	MEAN

3.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.