IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.51   STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
828	 54.71	-2	893034..894137	-	367	116250594	-	RL0822	-	DegT family aminotransferase
829	 55.76	-1	894348..894833	-	161	116250595	-	RL0823	-	hexapeptide repeat-containing acetyltransferase
830	 51.48	-2	894830..895909	-	359	116250596	-	RL0824	-	putative oxidoreductase
831	 51.74	-2	895930..897048	-	372	116250597	gmd	RL0825	-	putative GDP-mannose 4,6-dehydratase (GDP-d-mannose dehydratase)
832	 52.60	-2	897048..898028	-	326	116250598	fcl	RL0826	-	putative GDP-L-fucose synthetase
833	 62.94	0	898612..899040	+	142	116250599	-	RL0827	-	putative insertion sequence-related protein
834	 57.92	-1	899278..899517	+	79	116250600	-	RL0828	-	putative transmembrane protein
835	 58.27	0	899910..900290	-	126	116250601	-	RL0829	-	hypothetical protein
836	 56.36	-1	900366..900821	-	151	116250602	-	RL0830	-	hypothetical protein
837	 53.83	-2	901034..901477	-	147	116250603	-	RL0831	-	hypothetical protein
838	 60.98	0	901614..902405	+	263	116250604	-	RL0832	-	putative DNA ligase
839	 59.26	0	902806..902940	+	44	116250605	-	RL0833	-	putative transmembrane protein
840	 57.04	-1	903345..903479	-	44	116250606	-	RL0834	-	putative transmembrane protein
841	 58.04	-1	903597..904106	+	169	116250607	-	RL0835	-	hypothetical protein
842	 58.99	0	904103..906172	+	689	116250608	-	RL0836	-	putative insertion sequence ATP-binding protein
843	 49.79	-2	906202..906675	-	157	116250609	-	RL0836A	-	hypothetical protein
844	 51.69	-2	906688..906894	-	68	116250610	-	RL0837	-	hypothetical protein
845	 58.08	-1	906928..907218	-	96	116250611	-	RL0838	-	hypothetical protein
846	 53.85	-2	907278..907433	-	51	116250612	-	RL0839	-	hypothetical protein
847	 50.45	-2	908003..908224	+	73	116250613	-	RL0840	-	hypothetical protein
848	 55.27	-1	908253..908840	+	195	116250614	-	RL0841	-	hypothetical protein
849	 66.98	+1	909333..910913	+	526	116250615	-	RL0842	-	putative guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
850	 62.22	0	910916..911635	+	239	116250616	-	RL0843	-	putative ribosomal RNA methyltransferase/cell division FtsJ protein
851	 63.28	0	911794..912177	+	127	116250617	-	RL0844	-	hypothetical protein
852	 63.51	0	912289..913713	-	474	116250618	-	RL0845	-	MFS family permease
853	 59.62	0	913965..914972	+	335	116250619	-	RL0846	-	hypothetical protein
854	 64.24	0	915252..916736	+	494	116250620	guaB	RL0847	-	inositol-5-monophosphate dehydrogenase
855	 61.62	0	916739..917293	+	184	116250621	-	RL0848	-	putative transmembrane protein
856	 58.27	0	917458..917874	+	138	116250622	-	RL0849	-	putative transmembrane protein
857	 62.62	0	918152..918793	+	213	116250623	-	RL0850	-	TetR family transcriptional regulator
858	 63.85	0	918798..919754	-	318	116250624	-	RL0851	-	LysR family transcriptional regulator
859	 61.22	0	919969..920280	+	103	116250625	-	RL0852	-	hypothetical protein
860	 60.78	0	920536..921402	-	288	116250626	-	RL0853	-	hypothetical protein
861	 62.82	0	921599..922483	+	294	116250627	-	RL0854	-	hypothetical protein
862	 62.45	0	922548..923921	-	457	116250628	-	RL0855	-	putative gamma-glutamylcysteine synthetase precursor
863	 63.96	0	924069..924806	-	245	116250629	-	RL0856	-	hypothetical protein
864	 64.47	0	924824..926323	-	499	116250630	pit	RL0857	-	putative transmembrane inorganic phosphate transporter
865	 59.51	0	926386..926916	-	176	116250631	-	RL0858	-	putative NUDIX family protein
866	 67.58	+1	927182..928057	+	291	116250632	-	RL0859	-	putative HTH-type transcriptional regulator
867	 64.08	0	928156..929313	+	385	116250633	-	RL0860	-	putative adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase)
868	 64.16	0	929348..930343	-	331	116250634	-	RL0861	-	putative alcohol dehydrogenase
869	 65.73	+1	930487..931338	+	283	116250635	-	RL0862	-	LysR family transcriptional regulator
870	 64.41	0	931352..932194	-	280	116250636	-	RL0863	-	LysR family transcriptional regulator
871	 64.65	0	932409..933848	+	479	116250637	glcD	RL0864	-	putative glycolate oxidase subunit
872	 67.67	+1	933845..935044	+	399	116250638	glcE	RL0865	-	putative glycolate oxidase subunit
873	 64.76	0	935101..936411	+	436	116250639	glcF	RL0866	-	putative glycolate oxidase iron-sulfur subunit
874	 60.09	0	936477..936917	+	146	116250640	-	RL0867	-	hypothetical protein
875	 60.15	0	936939..937613	-	224	116250641	-	RL0868	-	lipid A oxidase
876	 63.20	0	937733..938425	-	230	116250642	-	RL0869	-	putative exported ErfK/YbiS/YhnG protein
877	 65.33	+1	938664..939410	-	248	116250643	-	RL0870	-	putative ErfK/YbiS/YhnG family protein
878	 59.37	0	939664..940293	+	209	116250644	tag	RL0871	-	putative DNA-3-methyladenine glycosylase I
879	 63.01	0	940305..940796	+	163	116250645	-	RL0872	-	hypothetical protein
880	 60.28	0	940816..941520	-	234	116250646	-	RL0873	-	putative haloacid dehydrogenase hydrolase
881	 63.05	0	941749..942798	+	349	116250647	-	RL0874	-	putative aldo/keto reductase
882	 56.76	-1	942866..943279	-	137	116250648	-	RL0875	-	hypothetical protein
883	 64.30	0	943720..944481	-	253	116250650	-	RL0876	-	hypothetical protein
884	 62.98	0	944612..946183	+	523	116250651	hisS	RL0877	-	histidyl-tRNA synthetase
885	 64.80	+1	946364..947485	+	373	116250652	hisZ	RL0878	-	ATP phosphoribosyltransferase regulatory subunit
886	 64.22	0	947482..948177	+	231	116250653	hisG	RL0879	-	ATP phosphoribosyltransferase catalytic subunit
887	 63.01	0	948256..948693	-	145	116250654	-	RL0880	-	putative transmembrane quinol oxidase subunit
888	 58.65	0	949008..949718	+	236	116250655	-	RL0881	-	putative glutathione S-transferase
889	 57.05	-1	949782..950228	-	148	116250656	-	RL0882	-	hypothetical protein
890	 60.28	0	950963..952606	-	547	116250657	groEL	RL0883	-	chaperonin GroEL
891	 61.62	0	952679..952975	-	98	116250658	groS	RL0884	-	putative 10 kDa chaperonin (protein cpn10)
892	 63.37	0	953370..954218	+	282	116250659	-	RL0885	-	putative hydrolase
893	 61.59	0	954249..955232	+	327	116250660	ribF	RL0886	-	bifunctional riboflavin kinase/FMN adenylyltransferase
894	 58.17	-1	955245..955703	-	152	116250661	-	RL0887	-	putative plasmid stability-like protein
895	 58.33	0	955700..955963	-	87	116250662	-	RL0888	-	hypothetical protein
896	 61.21	0	956316..959264	+	982	116250663	ileS	RL0889	-	isoleucyl-tRNA synthetase
897	 61.64	0	959271..960026	+	251	116250664	-	RL0890	-	hypothetical protein
898	 63.16	0	960076..960531	-	151	116250665	-	RL0891	-	putative nitrogen fixation symbiosis related protein
899	 69.09	+2	960604..962709	+	701	116250666	-	RL0892	-	putative ribosomal large subunit pseudouridine synthase B
900	 63.64	0	962690..963250	+	186	116250667	-	RL0893	-	hypothetical protein
901	 64.17	0	963263..964144	+	293	116250668	-	RL0894	-	putative patatin family protein
902	 63.36	0	964158..964610	-	150	116250669	-	RL0895	-	hypothetical protein
903	 61.57	0	964624..965997	-	457	116250670	-	RL0896	-	putative transmembrane transporter
904	 63.97	0	966087..966494	-	135	116250671	-	RL0897	-	hypothetical protein
905	 65.23	+1	966586..968400	-	604	116250672	-	RL0898	-	putative glutathione-regulated cation-efflux system protein
906	 64.07	0	968519..969865	+	448	116250673	-	RL0899	-	putative maturation protein
907	 64.32	0	969882..970691	+	269	116250674	-	RL0900	-	putative inositol monophosphate family protein
908	 55.12	-1	970660..970962	-	100	116250675	-	RL0901	-	hypothetical protein
909	 64.92	+1	971171..972490	+	439	116250676	-	RL0902	-	3-deoxy-D-manno-octulosonic-acid transferase
910	 65.28	+1	972500..973222	+	240	116250677	gph	RL0903	-	putative phosphoglycolate phosphatase
911	 65.55	+1	973405..974478	+	357	116250678	lpxK	RL0904	-	tetraacyldisaccharide 4'-kinase
912	 54.58	-2	974801..975685	-	294	116250679	-	RL0905	-	GntR family transcriptional regulator
913	 58.64	0	975785..976843	+	352	116250680	-	RL0906	-	putative transmembrane component of ABC transporter
914	 59.08	0	976840..977604	+	254	116250681	-	RL0907	-	putative ATP-binding component of ABC transporter
915	 58.39	0	977683..978600	+	305	116250682	-	RL0908	-	putative solute-binding component of ABC transporter
916	 58.27	0	978735..979115	-	126	116250683	-	RL0909	-	hypothetical protein
917	 66.61	+1	979136..980938	-	600	116250684	mutL	RL0910	-	DNA mismatch repair protein
918	 61.44	0	981122..982843	+	573	116250685	-	RL0911	-	putative two-component sensor histidine kinase transcriptional regulatory protein
919	 62.34	0	982997..984361	+	454	116250686	-	RL0912	-	putative GGDEF/EAL sensory box protein
920	 62.21	0	984436..985041	-	201	116250687	-	RL0913	-	putative PRC family protein
921	 61.60	0	985276..986163	-	295	116250688	-	RL0914	-	hypothetical protein
922	 64.64	0	986160..986801	-	213	116250689	dgoA	RL0915	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
923	 67.97	+1	986815..987732	-	305	116250690	dgoK	RL0916	-	putative 2-dehydro-3-deoxygalactonokinase
924	 64.18	0	987732..988496	-	254	116250691	-	RL0917	-	putative nodulation protein, 3-oxoacyl-(Acyl carrier protein) reductase
925	 62.91	0	988608..989405	+	265	116250692	-	RL0918	-	IclR family transcriptional regulator
926	 60.43	0	989655..990392	+	245	116250693	-	RL0919	-	LuxR/GerE family transcriptional regulator
927	 65.55	+1	990927..992087	+	386	116250694	-	RL0920	-	putative ATP-binding mrp family protein
61.51	MEAN

3.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.