IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
531	 58.73	0	568497..568874	+	125	116250297	-	RL0526	-	hypothetical protein
532	 58.33	0	568932..569315	+	127	116250298	-	RL0527	-	hypothetical protein
533	 60.90	0	569648..570046	+	132	116250299	-	RL0528	-	hypothetical protein
534	 64.05	0	570199..571689	-	496	116250300	-	RL0529	-	putative transmembrane transporter
535	 69.03	+2	571949..572329	-	126	116250301	-	RL0530	-	hypothetical protein
536	 57.21	-1	572448..572849	-	133	116250302	-	RL0531	-	putative transmembrane protein
537	 60.98	0	572953..575220	-	755	116250303	fixI	RL0532	-	putative nitrogen fixation cation ATP-ase protein
538	 58.91	0	575234..576058	-	274	116250304	-	RL0533	-	hypothetical protein
539	 58.25	-1	576250..577128	-	292	116250305	fixP	RL0534	-	putative membrane-anchored cbb3 cytochrome oxidase subunit
540	 50.88	-2	577119..577289	-	56	116250306	fixQ	RL0533A	-	putative cbb3 cytochrome oxidase subunit FixQ protein
541	 60.29	0	577308..578060	-	250	116250307	fixO	RL0535	-	putative FixO cytochrome-cbb3 oxidase subunit
542	 56.75	-1	578064..579707	-	547	116250308	fixN	RL0536	-	putative cytochrome cbb3 oxidase subunit
543	 66.15	+1	580205..581164	-	319	116250309	-	RL0537	-	hypothetical protein
544	 65.66	+1	581450..582637	+	395	116250310	-	RL0538	-	putative transmembrane protein
545	 58.96	0	582735..583616	-	293	116250311	-	RL0539	-	hypothetical protein
546	 64.22	0	583856..585079	+	407	116250312	-	RL0540	-	putative two-component sensor histidine kinase transcriptional regulatory protein
547	 57.21	-1	585168..585569	+	133	116250313	-	RL0541	-	hypothetical protein
548	 59.52	0	586041..587075	+	344	116250314	-	RL0542	-	putative solute-binding component of ABC transporter
549	 63.23	0	587241..588722	+	493	116250315	-	RL0543	-	putative transmembrane component of ABC transporter
550	 62.51	0	588719..590041	+	440	116250316	-	RL0544	-	putative transmembrane component of ABC transporter
551	 61.64	0	590057..590872	+	271	116250317	-	RL0545	-	putative ATP-binding component of ABC transporter
552	 59.94	0	590917..591630	+	237	116250318	phoU	RL0546	-	putative phosphate transport system protein
553	 63.30	0	591764..592447	+	227	116250319	phoB	RL0547	-	putative phosphate regulon two-component regulator transcriptional regulatory protein
554	 64.61	0	592768..593301	-	177	116250320	-	RL0548	-	hypothetical protein
555	 65.04	+1	593692..594921	+	409	116250321	argD	RL0549	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
556	 60.87	0	594964..595878	+	304	116250322	argF	RL0550	-	ornithine carbamoyltransferase
557	 65.96	+1	595970..596962	+	330	116250323	hslO	RL0551	-	Hsp33-like chaperonin
558	 51.73	-2	597136..597684	+	182	116250324	-	RL0552	-	hypothetical protein
559	 58.15	-1	597820..598230	-	136	116250325	apaG	RL0553	-	ApaG
560	 63.12	0	598445..599629	-	394	116250326	metZ	RL0554	-	O-succinylhomoserine sulfhydrylase
561	 63.56	0	599824..600918	+	364	116250327	-	RL0555	-	2'-deoxycytidine 5'-triphosphate deaminase
562	 59.80	0	601181..601690	-	169	116250328	-	RL0556	-	hypothetical protein
563	 62.11	0	602667..604574	-	635	116250329	-	RL0558	-	putative transmembrane cellulose synthase catalytic subunit
564	 62.31	0	604571..605557	-	328	116250330	-	RL0559	-	putative UDP-glucose 4-epimerase
565	 59.89	0	605557..606603	-	348	116250331	-	RL0560	-	putative epimerase
566	 61.44	0	606958..608106	+	382	116250332	-	RL0561	-	AraC family transcriptional regulator
567	 59.14	0	608186..608464	-	92	116250333	-	RL0562	-	hypothetical protein
568	 59.58	0	608889..609269	+	126	116250334	-	RL0563	-	hypothetical protein
569	 65.46	+1	609477..611465	-	662	116250335	-	RL0564	-	putative methyl-accepting chemotaxis protein
570	 62.56	0	612044..612919	+	291	116250336	-	RL0565	-	putative solute-binding component of ABC transporter
571	 63.53	0	612948..613361	-	137	116250337	-	RL0566	-	hypothetical protein
572	 68.19	+2	613464..614186	-	240	116250338	-	RL0567	-	hypothetical protein
573	 66.22	+1	614198..614875	-	225	116250339	-	RL0568	-	putative phage-related transcriptional regulator
574	 64.04	0	614997..615644	-	215	116250340	-	RL0569	-	putative two-component response regulator
575	 62.16	0	615736..616134	-	132	116250341	-	RL0570	-	hypothetical protein
576	 62.14	0	616353..616772	+	139	116250342	-	RL0571	-	hypothetical protein
577	 64.83	+1	616769..617857	+	362	116250343	-	RL0572	-	dihydroorotate dehydrogenase 2
578	 64.44	0	617833..619179	-	448	116250344	dinF	RL0573	-	putative transmembrane DNA-damage inducible protein
579	 65.86	+1	619265..619762	-	165	116250345	-	RL0574	-	hypothetical protein
580	 58.49	0	619764..620081	-	105	116250346	-	RL0575	-	putative transmembrane protein
581	 64.42	0	620232..621164	+	310	116250347	-	RL0576	-	TPR repeat-containing protein
582	 62.31	0	621346..622011	+	221	116250348	-	RL0577	-	putative transmembrane protein
583	 56.47	-1	622606..623007	-	133	116250349	-	RL0578	-	hypothetical protein
584	 60.39	0	623079..623540	-	153	116250350	-	RL0579	-	hypothetical protein
585	 63.87	0	623563..624063	-	166	116250351	-	RL0580	-	putative Rrf2 transcriptional regulator
586	 64.45	0	624197..624829	+	210	116250352	-	RL0581	-	putative transmembrane protein
587	 64.28	0	624981..627491	+	836	116250353	-	RL0582	-	putative ATP-dependent helicase
588	 63.92	0	627513..628241	+	242	116250354	-	RL0583	-	hypothetical protein
589	 61.86	0	628274..628855	-	193	116250355	-	RL0584	-	hypothetical protein
590	 59.68	0	628999..629556	-	185	116250356	-	RL0585	-	putative RibD family protein
591	 63.81	0	629758..630561	-	267	116250357	-	RL0586	-	putative transmembrane protein
592	 61.90	0	630558..631481	-	307	116250358	-	RL0587	-	putative transmembrane protein
593	 67.56	+1	631794..635597	-	1267	116250359	-	RL0588	-	putative peptidoglycan binding protein
594	 60.66	0	635925..636290	-	121	116250360	-	RL0589	-	hypothetical protein
595	 67.52	+1	636506..637207	-	233	116250361	-	RL0590	-	putative short-chain dehydrogenase/reductase
596	 62.83	0	637480..639276	+	598	116250362	-	RL0591	-	putative acyl-CoA dehydrogenase
597	 63.85	0	639418..640626	+	402	116250363	-	RL0592	-	acetyl-CoA acetyltransferase
598	 59.90	0	640629..641012	+	127	116250364	-	RL0593	-	hypothetical protein
599	 62.74	0	641029..643242	+	737	116250365	-	RL0594	-	putative fatty oxidation complex subunit
600	 60.00	0	643507..643716	+	69	116250366	cspA	RL0595	-	putative cold shock protein
601	 68.06	+2	643907..644410	-	167	116250367	-	RL0596	-	MarR family transcriptional regulator
602	 59.01	0	644466..644870	+	134	116250368	-	RL0597	-	hypothetical protein
603	 64.64	0	644964..645407	+	147	116250369	-	RL0598	-	hypothetical protein
604	 65.17	+1	645417..646619	-	400	116250370	-	RL0599	-	putative transmembrane efflux protein
605	 64.80	+1	646728..647315	+	195	116250371	-	RL0600	-	TetR family transcriptional regulator
606	 63.88	0	647427..650948	-	1173	116250372	-	RL0601	-	putative transmembrane two-component sensor kinase/regulator hybrid
607	 60.27	0	651171..651608	+	145	116250373	-	RL0602	-	putative transmembrane ionic channel
608	 63.32	0	651731..652897	+	388	116250374	-	RL0603	-	aspartate aminotransferase
609	 61.73	0	653236..654309	+	357	116250375	exoB	RL0604	-	hypothetical protein
610	 60.75	0	654416..656377	+	653	116250376	-	RL0605	-	putative GGDEF sensory box family protein
611	 66.20	+1	656461..657525	+	354	116250377	-	RL0606	-	enoyl-CoA hydratase
612	 64.77	+1	657537..659594	-	685	116250378	uvrD	RL0607	-	putative uvrD ATP-dependent helicase
613	 62.92	0	659702..659968	-	88	116250379	-	RL0608	-	hypothetical protein
614	 67.82	+1	660147..660407	+	86	116250380	-	RL0609	-	hypothetical protein
615	 58.71	0	660566..660829	+	87	116250381	-	RL0610	-	hypothetical protein
616	 60.91	0	661083..661325	-	80	116250382	-	RL0610A	-	hypothetical protein
617	 65.12	+1	662438..663730	+	430	116250383	murA	RL0611	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
618	 64.84	+1	663887..664270	+	127	116250384	-	RL0612	-	hypothetical protein
619	 64.28	0	664326..665624	+	432	116250385	hisD	RL0613	-	histidinol dehydrogenase
620	 61.60	0	665629..666102	+	157	116250386	-	RL0614	-	hypothetical protein
621	 61.73	0	666099..666584	+	161	116250387	-	RL0615	-	putative arsenate reductase
622	 55.71	-1	666708..666926	+	72	116250388	infA	RL0616	-	translation initiation factor IF-1
623	 62.32	0	666985..667605	+	206	116250389	-	RL0617	-	Maf-like protein
624	 61.97	0	667735..667947	+	70	116250390	-	RL0618	-	zinc-binding protein
625	 57.72	-1	668351..668596	+	81	116250391	-	RL0619	-	hypothetical protein
626	 58.91	0	668606..668953	+	115	116250392	-	RL0620	-	hypothetical protein
627	 53.55	-2	669116..669397	-	93	116250393	-	RL0621	-	putative insertion element related protein
628	 59.89	0	669402..670862	-	486	116250394	-	RL0622	-	HlyD family secretion protein
629	 57.93	-1	670877..672592	-	571	116250395	-	RL0623	-	putative transmembrane component of ABC transporter
630	 59.55	0	672683..673258	-	191	116250396	-	RL0624	-	hypothetical protein
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.