IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4115	 63.33	0	4396386..4397375	+	329	116253886	-	RL4149	-	hypothetical protein
4116	 61.74	0	4397382..4397888	+	168	116253887	-	RL4150	-	putative acetyltransferase
4117	 63.22	0	4398032..4399366	+	444	116253888	-	RL4151	-	putative transposon-related protein
4118	 63.61	0	4399657..4400475	+	272	116253889	cysE	RL4152	-	putative serine acetyltransferase
4119	 61.23	0	4400572..4401729	-	385	116253890	-	RL4153	-	GGDEF domain-containing regulatory protein
4120	 64.07	0	4401885..4402964	-	359	116253891	-	RL4154	-	hypothetical protein
4121	 65.82	+1	4403165..4403755	-	196	116253892	-	RL4155	-	putative acetyltransferase protein
4122	 61.90	0	4403850..4404983	-	377	116253893	-	RL4156	-	putative lysine/ornithine decarboxylase
4123	 60.51	0	4405512..4406405	+	297	116253894	-	RL4157	-	LysR family transcriptional regulator
4124	 57.17	-1	4406628..4407269	+	213	116253895	-	RL4158	-	hypothetical protein
4125	 65.18	+1	4407263..4408339	+	358	116253896	-	RL4159	-	putative transmembrane protein
4126	 59.91	0	4408545..4409240	-	231	116253897	-	RL4160	-	hypothetical protein
4127	 63.89	0	4409304..4410023	-	239	116253898	-	RL4161	-	hypothetical protein
4128	 66.04	+1	4410279..4410917	-	212	116253899	eda	RL4162	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
4129	 59.10	0	4411072..4411560	+	162	116253900	-	RL4163	-	hypothetical protein
4130	 63.92	0	4411538..4412446	+	302	116253901	-	RL4164	-	hypothetical protein
4131	 61.22	0	4412594..4413070	+	158	116253902	-	RL4165	-	putative glyoxalase family protein
4132	 61.40	0	4413142..4414071	+	309	116253903	-	RL4166	-	hypothetical protein
4133	 63.23	0	4414090..4416303	-	737	116253904	-	RL4167	-	putative transmembrane sensory box GGDEF/EAL family protein
4134	 60.84	0	4416417..4417790	-	457	116253905	abg	RL4168	-	putative beta-glucosidase
4135	 60.99	0	4418028..4418432	+	134	116253906	-	RL4169	-	putative transmembrane DoxD family protein
4136	 63.72	0	4418509..4419696	-	395	116253907	-	RL4170	-	GFO/IDH/MocA family oxidoreductase
4137	 61.82	0	4419922..4420974	-	350	116253908	-	RL4171	-	putative endonuclease
4138	 61.60	0	4421224..4422171	-	315	116253909	-	RL4172	-	putative solute-binding component of ABC transporter
4139	 62.69	0	4422287..4423291	-	334	116253910	-	RL4173	-	putative transmembrane component of ABC transporter
4140	 61.43	0	4423369..4424895	-	508	116253911	-	RL4174	-	putative ATP-binding component of ABC transporter
4141	 62.89	0	4425065..4426096	+	343	116253912	-	RL4175	-	LacI family transcriptional regulator
4142	 60.56	0	4426174..4427484	-	436	116253913	xylA	RL4176	-	xylose isomerase
4143	 65.98	+1	4427533..4428984	-	483	116253914	xylB	RL4177	-	putative xylulose kinase
4144	 65.11	+1	4429006..4430031	-	341	116253915	-	RL4178	-	LacI family transcriptional regulator
4145	 61.16	0	4430233..4431831	-	532	116253916	-	RL4179	-	putative transmembrane transporter
4146	 64.36	0	4431859..4433070	-	403	116253917	-	RL4180	-	putative HlyD secretion protein
4147	 62.56	0	4433222..4433902	+	226	116253918	-	RL4181	-	TetR family transcriptional regulator
4148	 60.36	0	4434008..4434847	+	279	116253919	-	RL4182	-	AraC family transcriptional regulator
4149	 61.11	0	4435078..4435815	+	245	116253920	-	RL4183	-	putative transmembrane protein
4150	 61.42	0	4436061..4437527	+	488	116253921	gltX	RL4184	-	glutamyl-tRNA synthetase
4151	 60.86	0	4437550..4439046	+	498	116253922	lysS	RL4185	-	putative lysyl-tRNA synthetase
4152	 60.29	0	4439213..4439965	-	250	116253923	-	RL4186	-	putative oxidoreductase
4153	 61.28	0	4440098..4440988	+	296	116253924	-	RL4187	-	AraC family transcriptional regulator
4154	 62.77	0	4441001..4441693	-	230	116253925	-	RL4188	-	hypothetical protein
4155	 64.36	0	4441873..4442781	+	302	116253926	-	RL4189	-	LysR family transcriptional regulator
4156	 62.27	0	4442899..4444059	+	386	116253927	-	RL4190	-	putative solute-binding component of ABC transporter
4157	 66.77	+1	4444272..4445258	+	328	116253928	-	RL4191	-	putative ATP-binding component of ABC transporter
4158	 59.94	0	4445255..4446220	+	321	116253929	-	RL4192	-	putative transmembrane component of ABC transporter
4159	 64.21	0	4446210..4447022	+	270	116253930	-	RL4193	-	putative transmembrane component of ABC transporter
4160	 62.25	0	4447036..4448463	+	475	116253931	-	RL4194	-	gamma-aminobutyraldehyde dehydrogenase
4161	 55.40	-1	4448575..4448787	+	70	116253932	-	RL4195	-	hypothetical protein
4162	 55.89	-1	4448867..4449562	-	231	116253933	-	RL4196	-	hypothetical protein
4163	 56.79	-1	4449686..4451062	-	458	116253934	-	RL4197	-	putative transmembrane two-component sensor histidine kinase transcriptional regulatory protein
4164	 57.95	-1	4451059..4451781	-	240	116253935	-	RL4198	-	putative two-component response regulator transcriptional regulatory protein
4165	 55.31	-1	4451988..4452260	+	90	116253936	-	RL4199	-	hypothetical protein
4166	 55.69	-1	4452440..4452931	-	163	116253937	-	RL4200	-	hypothetical protein
4167	 59.11	0	4453058..4453507	-	149	116253938	-	RL4201	-	DoxD family transmembrane protein
4168	 58.74	0	4453557..4454225	-	222	116253939	-	RL4202	-	putative transmembrane protein
4169	 62.14	0	4454319..4455290	-	323	116253940	talB	RL4203	-	transaldolase B
4170	 61.50	0	4455711..4456736	+	341	116253941	-	RL4204	-	putative transcriptional regulator
4171	 63.26	0	4456769..4457707	-	312	116253942	-	RL4205	-	putative DNA repair methyltransferase
4172	 59.24	0	4457721..4458218	-	165	116253943	-	RL4206	-	putative transmembrane protein
4173	 64.06	0	4458217..4459023	+	268	116253944	-	RL4207	-	putative endonuclease III
4174	 65.47	+1	4458988..4459572	-	194	116253945	-	RL4208	-	TetR family transcriptional regulator
4175	 59.62	0	4459650..4460075	+	141	116253946	-	RL4209	-	putative glyoxalase protein
4176	 59.24	0	4460079..4460792	-	237	116253947	cysZ	RL4210	-	CysZ-like protein
4177	 63.04	0	4461027..4461881	+	284	116253948	-	RL4211	-	putative transcriptional regulator
4178	 64.78	+1	4461933..4463519	-	528	116253949	araB	RL4212	-	putative ribulokinase
4179	 60.00	0	4463516..4464205	-	229	116253950	-	RL4213	-	putative hydrolase family protein
4180	 60.46	0	4464300..4465781	-	493	116253951	mtlK	RL4214	-	putative mannitol 2-dehydrogenase
4181	 62.76	0	4465866..4466864	-	332	116253952	-	RL4215	-	putative ATP-binding component of mannitol ABC transport protein
4182	 60.65	0	4466885..4467715	-	276	116253953	mtlG	RL4216	-	putative mannitol transmembrane permease component of ABC transporter
4183	 59.48	0	4467717..4468676	-	319	116253954	mtlF	RL4217	-	putative mannitol transmembrane permease component of ABC transporter
4184	 61.48	0	4468731..4470041	-	436	116253955	mtlE	RL4218	-	putative mannitol-binding component of ABC transporter
4185	 62.89	0	4470188..4471141	-	317	116253956	-	RL4219	-	putative transcriptional regulator
4186	 63.39	0	4471291..4471869	-	192	116253957	exoD	RL4220	-	putative exopolysaccharide biosynthesis protein
4187	 68.19	+2	4472260..4473180	+	306	116253958	-	RL4221	-	putative kinase
4188	 63.32	0	4473177..4475087	-	636	116253959	exoI	RL4222	-	putative beta-hexosaminidase
4189	 63.65	0	4475300..4478446	-	1048	116253960	-	RL4223	-	Acr/RND family transmembrane transporter
4190	 62.02	0	4478473..4479612	-	379	116253961	-	RL4224	-	HlyD family secretion transport protein
4191	 58.78	0	4479663..4480271	-	202	116253962	-	RL4225	-	TetR family transcriptional regulator
4192	 62.04	0	4480544..4480975	-	143	116253963	osmC	RL4226	-	putative osmotically inducible protein C
4193	 61.41	0	4481184..4481963	-	259	116253964	-	RL4227	-	short chain dehydrogenase
4194	 62.18	0	4481964..4482854	-	296	116253965	-	RL4228	-	putative epimerase
4195	 60.04	0	4482851..4483801	-	316	116253966	araH	RL4229	-	L-arabinose transporter permease protein
4196	 61.37	0	4483819..4485327	-	502	116253967	araG	RL4230	-	L-arabinose transporter ATP-binding protein
4197	 61.59	0	4485395..4486378	-	327	116253968	-	RL4231	-	putative solute-binding component of ABC transporter
4198	 63.89	0	4486591..4487346	+	251	116253969	-	RL4232	-	GntR family transcriptional regulator
4199	 61.10	0	4487413..4488561	+	382	116253970	-	RL4233	-	putative epimerase
4200	 56.57	-1	4488715..4489110	+	131	116253971	-	RL4234	-	putative transmembrane protein
4201	 63.97	0	4489192..4489971	+	259	116253972	fabG	RL4235	-	3-ketoacyl-(acyl-carrier-protein) reductase
4202	 61.69	0	4489989..4491275	-	428	116253973	cyaB	RL4236	-	aputative adenylate/guanylate cyclase
4203	 66.37	+1	4491272..4492297	-	341	116253974	-	RL4237	-	hypothetical protein
4204	 62.71	0	4492393..4493580	+	395	116253975	-	RL4238	-	hypothetical protein
4205	 65.21	+1	4493783..4494604	+	273	116253976	-	RL4239	-	short chain dehydrogenase
4206	 61.40	0	4494700..4495611	+	303	116253977	-	RL4240	-	hypothetical protein
4207	 61.60	0	4495613..4496362	-	249	116253978	-	RL4241	-	hypothetical protein
4208	 62.51	0	4496381..4497463	-	360	116253979	-	RL4242	-	putative ATP-binding component of ABC transporter
4209	 63.05	0	4497483..4498394	-	303	116253980	-	RL4243	-	putative transmembrane component of ABC transporter
4210	 61.49	0	4498396..4499283	-	295	116253981	-	RL4244	-	putative transmembrane component of ABC transporter
4211	 60.25	0	4499387..4500679	-	430	116253982	-	RL4245	-	putative solute-binding component of ABC transporter
4212	 62.29	0	4500861..4501889	+	342	116253983	-	RL4246	-	GFO/IDH/MocA family oxidoreductase
4213	 63.16	0	4501899..4502897	+	332	116253984	-	RL4247	-	LacI family transcriptional regulatory protein
4214	 62.83	0	4503100..4505343	+	747	116253985	lacZ	RL4248	-	putative beta-galactosidase
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.