IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3582	 59.77	0	3795148..3796089	+	313	116253352	-	RL3609	-	hypothetical protein
3583	 62.79	0	3796102..3796926	+	274	116253353	-	RL3610	-	hypothetical protein
3584	 62.90	0	3797297..3798358	+	353	116253354	-	RL3611	-	putative two-component response regulator transcriptional regulatory protein
3585	 62.99	0	3798644..3800383	-	579	116253355	ilvD	RL3612	-	dihydroxy-acid dehydratase
3586	 62.90	0	3800445..3801878	-	477	116253356	-	RL3613	-	putative aldehyde dehydrogenase
3587	 61.65	0	3801947..3802942	-	331	116253357	-	RL3614	-	hypothetical protein
3588	 59.20	0	3803061..3804266	-	401	116253358	-	RL3615	-	putative transmembrane component of ABC transporter
3589	 57.44	-1	3804263..3805801	-	512	116253359	-	RL3616	-	putative ATP-binding component of ABC transporter protein
3590	 57.93	-1	3805894..3806958	-	354	116253360	-	RL3617	-	putative solute-binding component of ABC transporter
3591	 61.25	0	3807257..3808234	+	325	116253361	-	RL3618	-	LysR family transcriptional regulator
3592	 63.80	0	3808297..3808785	+	162	116253362	-	RL3619	-	hypothetical protein
3593	 60.64	0	3809094..3809972	+	292	116253363	-	RL3620	-	hypothetical protein
3594	 64.54	0	3810296..3810577	-	93	116253364	-	RL3621	-	putative transmembrane protein
3595	 63.24	0	3810859..3811851	+	330	116253365	-	RL3622	-	putative inositol 2-dehydrogenase
3596	 62.99	0	3812017..3813267	-	416	116253366	-	RL3623	-	hypothetical protein
3597	 61.58	0	3813495..3814535	+	346	116253367	-	RL3624	-	putative solute-binding component of ABC transporter
3598	 64.38	0	3814802..3816115	+	437	116253368	-	RL3625	-	putative transmembrane component of ABC transporter
3599	 63.73	0	3816130..3816912	+	260	116253369	-	RL3626	-	putative component of ABC transporter
3600	 61.56	0	3818170..3819540	+	456	116253370	-	RL3627	-	hypothetical protein
3601	 56.92	-1	3820328..3821281	+	317	116253371	-	RL3628	-	putative sugar decarboxylase
3602	 59.21	0	3821313..3822533	+	406	116253372	-	RL3629	-	putative glycosyltransferase
3603	 60.31	0	3822527..3825529	+	1000	116253373	-	RL3630	-	putative glycosyltransferase
3604	 58.57	0	3825537..3826610	+	357	116253374	-	RL3631	-	putative glycosyltransferase
3605	 59.77	0	3826607..3828361	+	584	116253375	-	RL3632	-	putative ATP-binding and permease component of ABC transporter protein
3606	 55.38	-1	3828358..3829482	+	374	116253376	exoU	RL3633	-	putative UDP-hexose transferase
3607	 50.19	-2	3830739..3831005	+	88	116253377	-	RL3634	-	hypothetical protein
3608	 58.63	0	3831407..3831655	-	82	116253378	-	RL3635	-	hypothetical protein
3609	 62.85	0	3831759..3832466	-	235	116253379	-	RL3636	-	putative antibiotic resistance protein
3610	 62.45	0	3832463..3833671	-	402	116253380	-	RL3637	-	hypothetical protein
3611	 60.39	0	3833947..3835794	-	615	116253381	-	RL3638	-	putative peptide antibiotic resistance protein
3612	 54.93	-2	3835804..3836229	-	141	116253382	-	RL3639	-	putative transcriptional regulator
3613	 53.88	-2	3837644..3838081	-	145	116253383	-	RL3641	-	putative transmembrane protein
3614	 55.43	-1	3838212..3839297	+	361	116253384	-	RL3642	-	putative glycosyl hydrolase
3615	 57.55	-1	3839329..3840480	+	383	116253385	-	RL3643	-	putative glycosyl transferase
3616	 57.99	-1	3840480..3840986	+	168	116253386	-	RL3644	-	putative polysaccharide acetyltransferase protein
3617	 56.70	-1	3840983..3841885	+	300	116253387	exoV	RL3645	-	putative succinoglycan biosynthesis protein
3618	 58.21	-1	3841980..3843539	+	519	116253388	-	RL3646	-	putative transmembrane polysaccharide synthesis protein
3619	 57.61	-1	3843572..3844576	+	334	116253389	-	RL3647	-	putative polysaccharide polymerisation protein
3620	 58.52	0	3844616..3845437	+	273	116253390	-	RL3648	-	putative galactosyl transferase
3621	 55.98	-1	3845521..3846465	+	314	116253391	-	RL3649	-	putative glycosyltransferase
3622	 54.08	-2	3846637..3847605	+	322	116253392	-	RL3650	-	putative glycosyltransferase
3623	 54.57	-2	3847688..3848671	+	327	116253393	-	RL3651	-	putative glycosyl transferase
3624	 58.64	0	3848668..3849552	+	294	116253394	-	RL3652	-	putative glycosyl transferase
3625	 57.29	-1	3849549..3850529	+	326	116253395	exoM	RL3653	-	putative succinoglycan biosynthesis protein
3626	 58.17	-1	3850739..3851197	+	152	116253396	-	RL3654	-	putative polysaccharide biosynthesis protein
3627	 55.56	-1	3851194..3851670	+	158	116253397	-	RL3655	-	putative glycosyltransferase
3628	 56.94	-1	3851713..3852483	-	256	116253398	-	RL3656	-	putative lipase
3629	 57.03	-1	3852559..3853866	-	435	116253399	prsE	RL3657	-	HlyD family secretion protein
3630	 58.52	0	3853882..3855648	-	588	116253400	prsD	RL3658	-	putative transmembrane ABC transporter component
3631	 55.41	-1	3856114..3857739	-	541	116253401	-	RL3659	-	hypothetical protein
3632	 58.44	0	3859245..3859949	-	234	116253402	-	RL3661	-	hypothetical protein
3633	 57.18	-1	3859949..3862225	-	758	116253403	exoP	RL3662	-	putative succinoglycan biosynthesis transport protein
3634	 61.20	0	3862277..3862990	-	237	116253404	pssO	RL3663	-	putative polysaccharide transport outer membrane protein
3635	 56.34	-1	3863065..3864333	-	422	116253405	pssN	RL3664	-	putative capsule polysaccharide export protein
3636	 58.67	0	3864565..3865989	-	474	116253406	pssT	RL3665	-	putative polysaccharide export protein
3637	 56.13	-1	3866161..3866862	-	233	116253407	-	RL3666	-	hypothetical protein
3638	 60.57	0	3867167..3868495	+	442	116253408	-	RL3667	-	putative UDP-glucose 6-dehydrogenase
3639	 58.21	-1	3868612..3869403	-	263	116253409	-	RL3668	-	putative serine/threonine protein phosphatase
3640	 57.69	-1	3869404..3869793	-	129	116253410	-	RL3669	-	hypothetical protein
3641	 51.85	-2	3870078..3870320	+	80	116253411	-	RL3670	-	hypothetical protein
3642	 60.89	0	3870425..3871030	-	201	116253412	-	RL3671	-	hypothetical protein
3643	 62.27	0	3871042..3871974	-	310	116253413	-	RL3672	-	hypothetical protein
3644	 60.73	0	3872104..3872811	-	235	116253414	ung	RL3673	-	uracil-DNA glycosylase
3645	 60.96	0	3872979..3875942	+	987	116253415	noeK	RL3674	-	putative phosphomannomutase
3646	 52.43	-2	3876058..3876366	+	102	116253416	-	RL3675	-	hypothetical protein
3647	 55.49	-1	3876404..3877360	-	318	116253417	-	RL3676	-	putative transmembrane exo/endo phosphatase protein
3648	 58.90	0	3877641..3878657	+	338	116253418	lspL	RL3677	-	putative UDP-glucuronate 5'-epimerase
3649	 63.82	0	3878703..3879089	-	128	116253419	-	RL3678	-	hypothetical protein
3650	 63.25	0	3879851..3880552	+	233	116253420	-	RL3679	-	TetR family transcriptional regulator
3651	 64.00	0	3880549..3881562	+	337	116253421	-	RL3680	-	hypothetical protein
3652	 64.55	0	3881559..3883304	+	581	116253422	-	RL3681	-	putative ATP-binding component of ABC transporter
3653	 63.56	0	3883301..3884428	+	375	116253423	-	RL3682	-	putative transmembrane component of ABC transporter
3654	 62.61	0	3884430..3885539	+	369	116253424	-	RL3683	-	putative transmembrane component of ABC transporter
3655	 63.89	0	3885660..3886055	+	131	116253425	-	RL3684	-	putative transmembrane protein
3656	 62.64	0	3886150..3887193	-	347	116253426	-	RL3685	-	GFO/IDH/MocA family oxidoreductase
3657	 61.20	0	3887203..3887988	-	261	116253427	-	RL3686	-	putative transporter component protein
3658	 59.06	0	3888180..3888521	-	113	116253428	-	RL3687	-	putative transmembrane efflux protein
3659	 62.77	0	3888540..3889103	-	187	116253429	-	RL3688	-	TetR family transcriptional regulator
3660	 62.53	0	3889272..3889682	+	136	116253430	-	RL3689	-	putative globin family protein
3661	 65.86	+1	3889679..3890050	+	123	116253431	-	RL3690	-	putative transmembrane protein
3662	 57.46	-1	3890389..3890703	-	104	116253432	-	RL3691	-	hypothetical protein
3663	 60.44	0	3890713..3890985	-	90	116253433	-	RL3692	-	hypothetical protein
3664	 60.54	0	3890982..3891389	-	135	116253434	-	RL3693	-	hypothetical protein
3665	 58.92	0	3892871..3893296	-	141	116253435	-	RL3695	-	hypothetical protein
3666	 54.10	-2	3893471..3893653	+	60	116253436	hmuP	RL3696	-	hemin uptake protein
3667	 60.76	0	3893662..3894711	+	349	116253437	hmuS	RL3697	-	putative haem iron transport component
3668	 66.34	+1	3894723..3895652	+	309	116253438	hmuT	RL3698	-	hemin-binding component of ABC transporter
3669	 66.94	+1	3895655..3896767	+	370	116253439	hmuU	RL3699	-	transmembrane permease component of haem ABC transporter
3670	 64.59	0	3896768..3897586	+	272	116253440	hmuV	RL3700	-	hemin importer ATP-binding subunit
3671	 63.19	0	3897735..3898079	+	114	116253441	-	RL3701	-	putative transmembrane protein
3672	 66.17	+1	3898089..3898490	+	133	116253442	-	RL3702	-	putative transmembrane protein
3673	 61.47	0	3898747..3899304	-	185	116253443	-	RL3703	-	RNA polymerase sigma factor
3674	 55.56	-1	3899314..3899520	-	68	116253444	-	RL3704	-	hypothetical protein
3675	 58.36	0	3899790..3900584	+	264	116253445	-	RL3705	-	two-component response regulator
3676	 59.07	0	3900786..3901772	+	328	116253446	-	RL3706	-	putative two-component regulator sensor histidine kinase transcriptional regulatory protein
3677	 63.00	0	3902180..3903541	+	453	116253447	gltB	RL3707	-	putative oxidoreductase
3678	 63.39	0	3903557..3904870	+	437	116253448	pydA	RL3708	-	dihydropyrimidine dehydrogenase
3679	 64.53	0	3904946..3905926	-	326	116253449	ftrA	RL3709	-	transcriptional activator FtrA
3680	 63.26	0	3906016..3906426	+	136	116253450	-	RL3710	-	putative rhodanese protein
3681	 62.76	0	3906484..3907506	-	340	116253451	-	RL3711	-	putative alcohol dehydrogenase
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.