IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3514	 62.60	0	3719506..3721152	-	548	116253284	aglA	RL3542	-	putative alpha-glucosidase
3515	 58.51	0	3721439..3723019	+	526	116253285	-	RL3543	-	putative solute-binding component of ABC transporter
3516	 59.42	0	3723068..3723991	+	307	116253286	-	RL3544	-	putative transmembrane component of ABC transporter protein
3517	 62.53	0	3723988..3724905	+	305	116253287	-	RL3545	-	putative transmembrane component of ABC transporter protein
3518	 63.59	0	3724908..3725915	+	335	116253288	-	RL3546	-	putative ATP-binding component of ABC transporter protein
3519	 63.93	0	3725908..3726894	+	328	116253289	-	RL3547	-	putative ATP-binding component of ABC transporter protein
3520	 63.08	0	3727126..3728046	+	306	116253290	kdgK	RL3548	-	putative 2-dehydro-3-deoxygluconokinase
3521	 59.65	0	3728908..3729948	+	346	116253291	glnII	RL3549	-	putative glutamine synthetase II
3522	 63.46	0	3730197..3731381	+	394	116253292	-	RL3550	-	putative glycosylltransferase
3523	 63.51	0	3731388..3732401	-	337	116253293	-	RL3551	-	putative exported lipase/esterase
3524	 60.27	0	3732563..3733000	+	145	116253294	-	RL3552	-	MarR family transcriptional regulator
3525	 64.06	0	3733251..3734672	-	473	116253295	engA	RL3553	-	GTP-binding protein EngA
3526	 63.30	0	3734691..3735374	-	227	116253296	-	RL3554	-	putative transmembrane protein
3527	 59.49	0	3735682..3736266	-	194	116253297	-	RL3555	-	putative transmembrane protein
3528	 61.40	0	3736388..3737374	+	328	116253298	-	RL3556	-	hypothetical protein
3529	 56.56	-1	3737598..3738863	-	421	116253299	bacA	RL3557	-	transport protein
3530	 65.84	+1	3738988..3740202	-	404	116253300	-	RL3558	-	putative transmembrane MFS permease protein
3531	 63.19	0	3740340..3740915	+	191	116253301	-	RL3559	-	PadR family transcriptional regulator
3532	 63.90	0	3740988..3741746	-	252	116253302	map	RL3560	-	methionine aminopeptidase
3533	 64.24	0	3741894..3742964	-	356	116253303	-	RL3561	-	putative luciferase family protein
3534	 61.54	0	3743211..3743678	-	155	116253304	-	RL3562	-	hypothetical protein
3535	 62.06	0	3743780..3745039	-	419	116253305	-	RL3563	-	putative RNA polymerase ECF sigma factor
3536	 57.60	-1	3745036..3745410	-	124	116253306	-	RL3564	-	hypothetical protein
3537	 60.44	0	3745546..3746187	-	213	116253307	-	RL3565	-	sensory box HD domain-containing protein
3538	 66.57	+1	3746297..3747283	+	328	116253308	-	RL3566	-	AraC family transcriptional regulator
3539	 58.18	-1	3747419..3748372	+	317	116253309	-	RL3567	-	hypothetical protein
3540	 63.99	0	3748423..3749916	-	497	116253310	glpK	RL3568	-	putative glycerol kinase
3541	 59.72	0	3750074..3750850	+	258	116253311	bdhA	RL3569	-	putative D-beta-hydroxybutyrate dehydrogenase
3542	 63.46	0	3750878..3752344	+	488	116253312	xdhA	RL3570	-	putative xanthine dehydrogenase
3543	 63.21	0	3752559..3754898	+	779	116253313	xdhB	RL3571	-	putative xanthine dehydrogenase
3544	 66.18	+1	3755195..3756010	+	271	116253314	xdhC	RL3572	-	putative xanthine dehydrogenase cofactor insertion
3545	 63.88	0	3756279..3757175	+	298	116253315	-	RL3573	-	LysR family transcriptional regulator
3546	 56.64	-1	3757263..3757601	-	112	116253316	-	RL3573A	-	hypothetical protein
3547	 62.73	0	3757759..3758139	-	126	116253317	-	RL3574	-	hypothetical protein
3548	 59.05	0	3758233..3758547	-	104	116253318	-	RL3575	-	hypothetical protein
3549	 60.13	0	3758661..3759899	+	412	116253319	-	RL3576	-	putative transmembrane protein
3550	 61.86	0	3759896..3761206	+	436	116253320	guaD	RL3577	-	guanine deaminase
3551	 63.17	0	3761330..3762472	+	380	116253321	lldD	RL3578	-	putative L-lactate dehydrogenase
3552	 63.56	0	3762603..3763760	+	385	116253322	-	RL3579	-	putative phage-related protein
3553	 60.96	0	3763765..3764412	+	215	116253323	-	RL3580	-	putative transmembrane protein
3554	 62.21	0	3764409..3766112	+	567	116253324	-	RL3581	-	hypothetical protein
3555	 61.13	0	3766248..3766988	-	246	116253325	-	RL3582	-	putative DNA repair protein
3556	 59.94	0	3766992..3767348	-	118	116253326	-	RL3583	-	putative purine catabolism protein
3557	 61.79	0	3767345..3767857	-	170	116253327	allA	RL3584	-	ureidoglycolate hydrolase
3558	 60.61	0	3767850..3768212	-	120	116253328	-	RL3585	-	hypothetical protein
3559	 64.06	0	3768209..3768706	-	165	116253329	-	RL3586	-	putative uricase
3560	 60.61	0	3768709..3769632	-	307	116253330	-	RL3587	-	putative polysaccharide deacetylase family protein
3561	 58.90	0	3769748..3770455	-	235	116253331	-	RL3588	-	hypothetical protein
3562	 65.56	+1	3770570..3771748	-	392	116253332	goxB	RL3589	-	putative glycine oxidase
3563	 64.16	0	3771747..3772505	+	252	116253333	-	RL3590	-	hypothetical protein
3564	 62.82	0	3772520..3775876	-	1118	116253334	-	RL3591	-	putative two-component sensor histidine kinase transcriptional regulatory protein
3565	 65.37	+1	3776197..3776505	+	102	116253335	-	RL3592	-	hypothetical protein
3566	 59.52	0	3776631..3778016	-	461	116253336	-	RL3593	-	putative transmembrane transporter
3567	 59.28	0	3778204..3779151	-	315	116253337	dapA	RL3594	-	putative dihydrodipicolinate synthase
3568	 60.16	0	3779313..3780341	+	342	116253338	-	RL3595	-	putative HTH-type transcriptional regulator
3569	 62.72	0	3780494..3781609	+	371	116253339	-	RL3596	-	hypothetical protein
3570	 65.22	+1	3781859..3783589	+	576	116253340	-	RL3597	-	putative DEAD box ATP-dependent RNA helicase protein
3571	 57.88	-1	3783966..3785285	-	439	116253341	-	RL3598	-	putative two-component sensor histidine kinase transcriptional regulatory protein
3572	 58.84	0	3785327..3786220	-	297	116253342	-	RL3599	-	putative two-component response regulator transcriptional regulatory protein
3573	 59.47	0	3786660..3787562	+	300	116253343	-	RL3600	-	putative transmembrane fatty acid synthesis protein
3574	 60.20	0	3787600..3787893	+	97	116253344	-	RL3601	-	hypothetical protein
3575	 61.74	0	3787898..3789196	+	432	116253345	-	RL3602	-	putative efflux RND transporter protein
3576	 58.59	0	3789193..3790356	+	387	116253346	-	RL3603	-	putative transmembrane transporter
3577	 63.57	0	3790791..3791081	-	96	116253347	-	RL3604	-	hypothetical protein
3578	 61.76	0	3791196..3791888	+	230	116253348	-	RL3605	-	putative transmembrane protein
3579	 53.14	-2	3791942..3792148	-	68	116253349	-	RL3606	-	hypothetical protein
3580	 64.77	+1	3792373..3793269	-	298	116253350	-	RL3607	-	putative transmembrane protein
3581	 59.25	0	3793679..3795148	+	489	116253351	-	RL3608	-	hypothetical protein
3582	 59.77	0	3795148..3796089	+	313	116253352	-	RL3609	-	hypothetical protein
3583	 62.79	0	3796102..3796926	+	274	116253353	-	RL3610	-	hypothetical protein
3584	 62.90	0	3797297..3798358	+	353	116253354	-	RL3611	-	putative two-component response regulator transcriptional regulatory protein
3585	 62.99	0	3798644..3800383	-	579	116253355	ilvD	RL3612	-	dihydroxy-acid dehydratase
3586	 62.90	0	3800445..3801878	-	477	116253356	-	RL3613	-	putative aldehyde dehydrogenase
3587	 61.65	0	3801947..3802942	-	331	116253357	-	RL3614	-	hypothetical protein
3588	 59.20	0	3803061..3804266	-	401	116253358	-	RL3615	-	putative transmembrane component of ABC transporter
3589	 57.44	-1	3804263..3805801	-	512	116253359	-	RL3616	-	putative ATP-binding component of ABC transporter protein
3590	 57.93	-1	3805894..3806958	-	354	116253360	-	RL3617	-	putative solute-binding component of ABC transporter
3591	 61.25	0	3807257..3808234	+	325	116253361	-	RL3618	-	LysR family transcriptional regulator
3592	 63.80	0	3808297..3808785	+	162	116253362	-	RL3619	-	hypothetical protein
3593	 60.64	0	3809094..3809972	+	292	116253363	-	RL3620	-	hypothetical protein
3594	 64.54	0	3810296..3810577	-	93	116253364	-	RL3621	-	putative transmembrane protein
3595	 63.24	0	3810859..3811851	+	330	116253365	-	RL3622	-	putative inositol 2-dehydrogenase
3596	 62.99	0	3812017..3813267	-	416	116253366	-	RL3623	-	hypothetical protein
3597	 61.58	0	3813495..3814535	+	346	116253367	-	RL3624	-	putative solute-binding component of ABC transporter
3598	 64.38	0	3814802..3816115	+	437	116253368	-	RL3625	-	putative transmembrane component of ABC transporter
3599	 63.73	0	3816130..3816912	+	260	116253369	-	RL3626	-	putative component of ABC transporter
3600	 61.56	0	3818170..3819540	+	456	116253370	-	RL3627	-	hypothetical protein
3601	 56.92	-1	3820328..3821281	+	317	116253371	-	RL3628	-	putative sugar decarboxylase
3602	 59.21	0	3821313..3822533	+	406	116253372	-	RL3629	-	putative glycosyltransferase
3603	 60.31	0	3822527..3825529	+	1000	116253373	-	RL3630	-	putative glycosyltransferase
3604	 58.57	0	3825537..3826610	+	357	116253374	-	RL3631	-	putative glycosyltransferase
3605	 59.77	0	3826607..3828361	+	584	116253375	-	RL3632	-	putative ATP-binding and permease component of ABC transporter protein
3606	 55.38	-1	3828358..3829482	+	374	116253376	exoU	RL3633	-	putative UDP-hexose transferase
3607	 50.19	-2	3830739..3831005	+	88	116253377	-	RL3634	-	hypothetical protein
3608	 58.63	0	3831407..3831655	-	82	116253378	-	RL3635	-	hypothetical protein
3609	 62.85	0	3831759..3832466	-	235	116253379	-	RL3636	-	putative antibiotic resistance protein
3610	 62.45	0	3832463..3833671	-	402	116253380	-	RL3637	-	hypothetical protein
3611	 60.39	0	3833947..3835794	-	615	116253381	-	RL3638	-	putative peptide antibiotic resistance protein
3612	 54.93	-2	3835804..3836229	-	141	116253382	-	RL3639	-	putative transcriptional regulator
3613	 53.88	-2	3837644..3838081	-	145	116253383	-	RL3641	-	putative transmembrane protein
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.