IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3094	 61.95	0	3277524..3279155	-	543	116252862	-	RL3120	-	putative two component regulator sensor histidine kinase transcriptional regulatory protein
3095	 56.98	-1	3279357..3279893	+	178	116252863	-	RL3121	-	putative acetyltransferase
3096	 59.79	0	3280193..3280774	+	193	116252864	gst	RL3122	-	putative glutathione S-transferase
3097	 62.69	0	3280771..3281625	+	284	116252865	-	RL3123	-	putative acetyltransferase
3098	 63.72	0	3281682..3282596	-	304	116252866	-	RL3124	-	putative esterase
3099	 65.30	+1	3282930..3283586	-	218	116252867	-	RL3125	-	hypothetical protein
3100	 71.25	+2	3283643..3284863	-	406	116252868	-	RL3126	-	hypothetical protein
3101	 62.84	0	3284983..3285792	+	269	116252869	-	RL3127	-	hypothetical protein
3102	 69.70	+2	3285798..3286160	+	120	116252870	-	RL3128	-	putative transmembrane protein
3103	 57.80	-1	3286270..3286923	-	217	116252871	-	RL3129	-	putative serine/threonine protein phosphatase
3104	 67.03	+1	3287079..3287909	-	276	116252872	-	RL3130	-	putative phosphatase protein
3105	 64.02	0	3287906..3288736	-	276	116252873	-	RL3131	-	putative glycerophosphoryl diester phosphodiesterase
3106	 64.79	+1	3288747..3289865	-	372	116252874	ugpC	RL3132	-	putative SN-glycerol-3-phosphate transport ATP-binding protein component of ABC transporter
3107	 61.00	0	3289868..3290785	-	305	116252875	ugpE	RL3133	-	putative SN-glycerol-3-phosphate transport system transmembrane component of ABC transporter
3108	 62.74	0	3290789..3291679	-	296	116252876	ugpA	RL3134	-	putative SN-glycerol-3-phosphate transport system permease protein
3109	 61.40	0	3291757..3293067	-	436	116252877	ugpB	RL3135	-	putative glycerol-3-phosphate-binding periplasmic protein precursor
3110	 61.63	0	3293274..3294425	+	383	116252878	-	RL3136	-	ROK family transcriptional regulator
3111	 61.20	0	3294735..3295448	+	237	116252879	-	RL3138	-	replicative DNA helicase
3112	 64.60	0	3295531..3296400	+	289	116252880	-	RL3139	-	hypothetical protein
3113	 56.07	-1	3296699..3297481	-	260	116252881	-	RL3140	-	putative methyltransferase
3114	 65.59	+1	3297641..3298663	+	340	116252882	-	RL3141	-	putative alkanal monooxygenase alpha chain ( luciferase family protein)
3115	 58.89	0	3298760..3299209	-	149	116252883	-	RL3142	-	putative transmembrane protein
3116	 61.88	0	3299206..3300312	-	368	116252884	-	RL3143	-	putative transmembrane transporter protein
3117	 64.36	0	3300501..3301325	-	274	116252885	-	RL3144	-	AraC family transcriptional regulator
3118	 63.04	0	3301492..3302346	+	284	116252886	-	RL3145	-	putative dehydrogenases
3119	 64.78	+1	3302645..3303544	+	299	116252887	-	RL3146	-	LysR family transcriptional regulator
3120	 67.69	+1	3303507..3304781	-	424	116252888	-	RL3147	-	putative transmembrane transporter
3121	 67.74	+1	3304778..3305428	-	216	116252889	-	RL3148	-	putative transcriptional regulator
3122	 69.52	+2	3305513..3306283	-	256	116252890	-	RL3149	-	putative adenylate/guanylate cyclase
3123	 56.44	-1	3306833..3307057	+	74	116252892	-	RL3150	-	hypothetical protein
3124	 64.40	0	3307173..3307481	-	102	116252893	-	RL3151	-	hypothetical protein
3125	 68.46	+2	3307667..3308113	-	148	116252894	-	RL3152	-	putative transcriptional regulator
3126	 61.84	0	3308578..3309012	+	144	116252895	ribH	RL3153	-	riboflavin synthase subunit beta
3127	 64.64	0	3309240..3309929	+	229	116252896	-	RL3154	-	hypothetical protein
3128	 64.42	0	3310211..3310744	-	177	116252897	-	RL3155	-	putative cytochrome b561
3129	 62.26	0	3310725..3311201	-	158	116252898	-	RL3156	-	MarR family transcriptional regulatory protein
3130	 61.52	0	3311300..3311668	+	122	116252899	-	RL3157	-	putative monooxygenase
3131	 58.76	0	3311743..3312627	-	294	116252900	-	RL3158	-	putative HTH-type transcriptional regulator
3132	 53.11	-2	3312751..3313908	+	385	116252901	ampC	RL3159	-	beta-lactamase
3133	 62.68	0	3314032..3314808	-	258	116252902	-	RL3160	-	hypothetical protein
3134	 59.80	0	3314922..3315824	-	300	116252903	-	RL3161	-	LysR family transcriptional regulator
3135	 61.11	0	3316018..3316413	+	131	116252904	-	RL3163	-	putative short-chain dehydrogenase/oxidoreductase
3136	 58.86	0	3316410..3316742	+	110	116252905	-	RL3162	-	putative short-chain dehydrogenase/oxidoreductase
3137	 62.99	0	3316736..3317224	+	162	116252906	-	RL3164	-	hypothetical protein
3138	 61.88	0	3318019..3321735	+	1238	116252907	-	RL3165	-	TPR repeat-containing protein
3139	 65.60	+1	3321735..3323705	+	656	116252908	-	RL3166	-	putative adenylate/guanylate cyclase
3140	 56.85	-1	3323754..3324293	-	179	116252909	-	RL3167	-	putative acetyltransferase
3141	 64.01	0	3324338..3325090	-	250	116252910	-	RL3168	-	putative nucleotidyltransferase
3142	 62.86	0	3325374..3326108	+	244	116252911	-	RL3169	-	putative hydrolase
3143	 60.83	0	3326081..3326611	+	176	116252912	-	RL3170	-	hexapeptide repeat-containing protein
3144	 63.77	0	3326891..3327616	-	241	116252913	-	RL3171	-	putative transmembrane protein
3145	 55.21	-1	3327688..3328176	-	162	116252914	-	RL3172	-	hypothetical protein
3146	 64.22	0	3328344..3328793	+	149	116252915	-	RL3173	-	hypothetical protein
3147	 58.15	-1	3328825..3329223	-	132	116252916	-	RL3174	-	hypothetical protein
3148	 61.40	0	3329494..3329892	-	132	116252917	zur	RL3175	-	putative zinc uptake regulation protein
3149	 64.34	0	3329889..3330704	-	271	116252918	znuB	RL3176	-	putative high-affinity zinc uptake system membrane protein
3150	 64.04	0	3330697..3331608	-	303	116252919	znuC	RL3177	-	putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein
3151	 62.89	0	3331756..3332760	+	334	116252920	znuA	RL3178	-	putative high-affinity zinc uptake system protein
3152	 63.43	0	3332907..3334112	+	401	116252921	-	RL3179	-	putative cobalamin biosynthesis protein
3153	 56.67	-1	3334109..3334288	+	59	116252922	-	RL3180	-	hypothetical protein
3154	 59.70	0	3334404..3334733	-	109	116252923	-	RL3181	-	hypothetical protein
3155	 61.72	0	3335097..3335480	+	127	116252924	-	RL3182	-	hypothetical protein
3156	 63.89	0	3335723..3337054	+	443	116252925	-	RL3183	-	putative transmembrane protein
3157	 64.70	0	3337051..3338472	-	473	116252926	chrA	RL3184	-	putative chromate transport protein
3158	 64.95	+1	3338474..3339289	-	271	116252927	chrB	RL3185	-	putative chromate resistance protein
3159	 66.02	+1	3339681..3339989	+	102	116252928	-	RL3186	-	putative transmembrane protein
3160	 58.55	0	3340276..3340743	-	155	116252929	-	RL3187	-	hypothetical protein
3161	 55.89	-1	3340755..3341051	-	98	116252930	-	RL3188	-	hypothetical protein
3162	 64.80	+1	3341499..3342410	-	303	116252931	-	RL3189	-	putative phenazine biosynthesis protein
3163	 63.57	0	3342576..3343349	-	257	116252932	-	RL3190	-	hypothetical protein
3164	 61.71	0	3343346..3344455	-	369	116252933	-	RL3191	-	putative exo/endo phosphatase
3165	 66.67	+1	3344981..3346000	-	339	116252934	-	RL3192	-	putative ATP-binding component of ABC transporter
3166	 63.66	0	3345988..3347682	-	564	116252935	-	RL3193	-	putative transmembrane component of ABC transporter
3167	 60.94	0	3347690..3348667	-	325	116252936	-	RL3194	-	putative solute-binding component of ABC transporter
3168	 63.93	0	3348859..3349626	-	255	116252937	-	RL3195	-	hypothetical protein
3169	 54.06	-2	3349750..3350328	+	192	116252938	-	RL3196	-	MarR family transcriptional regulator
3170	 62.89	0	3350553..3351611	+	352	116252939	-	RL3197	-	putative short-chain dehydrogenase/oxidoreductase
3171	 63.60	0	3351816..3352859	+	347	116252940	-	RL3198	-	hypothetical protein
3172	 61.83	0	3352899..3354119	-	406	116252941	-	RL3199	-	putative aminotransferase
3173	 62.34	0	3354317..3355426	+	369	116252942	ilvE	RL3200	-	branched-chain amino acid aminotransferase
3174	 53.85	-2	3355511..3355666	+	51	116252943	-	RL3201	-	putative PIN/PilT family protein
3175	 55.10	-1	3355674..3356036	+	120	116252944	-	RL3202	-	hypothetical protein
3176	 57.44	-1	3356020..3356355	+	111	116252945	-	RL3203	-	putative DNA stabilisation protein
3177	 64.80	+1	3356345..3356932	+	195	116252946	-	RL3204	-	hypothetical protein
3178	 61.47	0	3356982..3358001	-	339	116252947	ilvC	RL3205	-	ketol-acid reductoisomerase
3179	 64.56	0	3358051..3358716	-	221	116252948	-	RL3206	-	TetR family transcriptional regulator
3180	 63.12	0	3358858..3359337	+	159	116252949	-	RL3207	-	hypothetical protein
3181	 60.38	0	3359359..3359724	+	121	116252950	-	RL3208	-	hypothetical protein
3182	 63.10	0	3359808..3361490	-	560	116252951	-	RL3209	-	putative transmembrane protein
3183	 61.85	0	3361490..3362548	-	352	116252952	-	RL3210	-	putative glucosyl transferase
3184	 63.81	0	3362641..3363549	-	302	116252953	-	RL3211	-	AraC family transcriptional regulator
3185	 61.03	0	3363754..3364800	+	348	116252954	-	RL3212	-	putative alcohol dehydrogenase
3186	 63.85	0	3364862..3366817	-	651	116252955	-	RL3213	-	putative tetracycline resistance protein
3187	 65.56	+1	3367028..3368293	-	421	116252956	-	RL3214	-	putative transmembrane NADH dehydrogenase
3188	 58.49	0	3368402..3368866	-	154	116252957	-	RL3215	-	AsnC family transcriptional regulator
3189	 60.42	0	3369025..3369744	+	239	116252958	asr	RL3216	-	putative aspartate racemase
3190	 62.45	0	3369919..3370890	+	323	116252959	-	RL3217	-	MarR family transcriptional regulator
3191	 60.74	0	3370952..3371575	+	207	116252960	-	RL3218	-	TetR family transcriptional regulator
3192	 66.91	+1	3371686..3372894	+	402	116252961	-	RL3219	-	putative MFS permease transmembrane transporter protein
3193	 61.15	0	3372904..3373320	-	138	116252962	-	RL3220	-	hypothetical protein
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.