IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2345	 52.63	-2	2483815..2484441	+	208	116252113	nccN	RL2361	-	putative nickel-cobalt-cadmium resistance protein
2346	 63.81	0	2484736..2484945	+	69	116252114	-	RL2362	-	hypothetical protein
2347	 64.27	0	2484955..2485329	+	124	116252115	-	RL2363	-	hypothetical protein
2348	 63.19	0	2485492..2486784	+	430	116252116	-	RL2364	-	putative transmembrane efflux protein
2349	 64.16	0	2486797..2487513	+	238	116252117	-	RL2365	-	putative ATP-binding component of ABC transporter
2350	 64.59	0	2487503..2488705	+	400	116252118	-	RL2366	-	hypothetical protein
2351	 58.06	-1	2488779..2489138	+	119	116252119	-	RL2367	-	hypothetical protein
2352	 64.55	0	2489502..2490116	+	204	116252120	-	RL2368	-	GntR family transcriptional regulator
2353	 61.62	0	2490166..2490978	-	270	116252121	-	RL2369	-	putative NADPH:ferredoxin reductase
2354	 57.75	-1	2491338..2492066	+	242	116252122	pcs	RL2370	-	putative transmembrane phosphatidylcholine synthase
2355	 60.55	0	2492076..2493056	+	326	116252123	qor	RL2371	-	putative quinone oxidoreductase
2356	 65.39	+1	2493096..2494664	+	522	116252124	-	RL2372	-	putative ATP-binding component of ABC transporter
2357	 62.43	0	2494654..2495739	+	361	116252125	-	RL2373	-	putative transmembrane component of ABC transporter
2358	 63.08	0	2495736..2496656	+	306	116252126	-	RL2374	-	putative transmembrane component of ABC transporter
2359	 60.17	0	2496707..2497783	+	358	116252127	bmpA	RL2375	-	putative basic membrane lipoprotein
2360	 59.81	0	2497929..2498891	+	320	116252128	-	RL2376	-	putative periplasmic-binding protein component of ABC transporter
2361	 63.06	0	2499122..2500645	+	507	116252129	-	RL2377	-	putative solute-binding component of ABC transporter
2362	 61.24	0	2500642..2501655	+	337	116252130	-	RL2378	-	putative transmembrane component of ABC transporter
2363	 59.03	0	2501652..2502620	+	322	116252131	-	RL2379	-	inner membrane ABC transporter permease protein YjfF
2364	 61.96	0	2502637..2503422	+	261	116252132	-	RL2380	-	GntR family transcriptional regulator
2365	 64.02	0	2503587..2504948	+	453	116252133	-	RL2381	-	putative bifunctional GlmU protein
2366	 63.22	0	2505058..2506884	+	608	116252134	glmS	RL2382	-	D-fructose-6-phosphate amidotransferase
2367	 58.76	0	2507020..2507727	+	235	116252135	-	RL2383	-	hypothetical protein
2368	 66.19	+1	2507724..2509829	-	701	116252136	recG	RL2384	-	putative ATP-dependent DNA helicase
2369	 62.42	0	2509922..2510227	+	101	116252137	-	RL2385	-	hypothetical protein
2370	 64.47	0	2510224..2513724	+	1166	116252138	mfd	RL2386	-	putative transcription-repair coupling factor
2371	 62.18	0	2513789..2514256	+	155	116252139	-	RL2387	-	hypothetical protein
2372	 63.24	0	2514274..2514945	-	223	116252140	-	RL2388	-	Dsb family thioredoxin protein
2373	 61.51	0	2515012..2516814	-	600	116252141	-	RL2389	-	hypothetical protein
2374	 62.01	0	2517131..2517796	+	221	116252142	-	RL2390	-	putative invasion-associated protein
2375	 54.55	-2	2517910..2518239	-	109	116252143	-	RL2391	-	hypothetical protein
2376	 59.29	0	2518499..2519908	-	469	116252144	glnA	RL2392	-	putative glutamine synthetase I
2377	 57.82	-1	2519987..2520325	-	112	116252145	glnB	RL2393	-	putative nitrogen regulatory protein p-II
2378	 67.41	+1	2520669..2522141	+	490	116252146	-	RL2394	-	putative carbohydrate kinase protein
2379	 61.36	0	2522455..2523471	+	338	116252147	-	RL2395	-	putative transmembrane protein
2380	 60.84	0	2523502..2524308	-	268	116252148	-	RL2396	-	hypothetical protein
2381	 63.64	0	2524333..2524794	-	153	116252149	-	RL2397	-	putative acetyltransferase
2382	 62.97	0	2524791..2527712	-	973	116252150	uvrA	RL2398	-	excinuclease ABC subunit A
2383	 62.94	0	2527975..2528484	+	169	116252151	ssb	RL2399	-	single-strand DNA-binding protein
2384	 64.66	0	2528609..2529256	-	215	116252152	-	RL2400	-	MarC family transmembrane protein
2385	 63.32	0	2529493..2532330	+	945	116252153	gyrA	RL2401	-	DNA gyrase subunit A
2386	 60.97	0	2532975..2533553	-	192	116252154	-	RL2402	-	hypothetical protein
2387	 62.63	0	2533660..2534154	+	164	116252155	coaD	RL2403	-	phosphopantetheine adenylyltransferase
2388	 58.46	0	2534197..2534769	+	190	116252156	-	RL2404	-	putative peptidyl-prolyl cis-trans isomerase (cyclophilin)
2389	 60.59	0	2534799..2535308	+	169	116252157	-	RL2405	-	putative peptidyl-prolyl cis-trans isomerase B (cyclophilin-related protein)
2390	 64.55	0	2535384..2536469	+	361	116252158	queA	RL2406	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2391	 63.04	0	2536466..2537596	+	376	116252159	tgt	RL2407	-	queuine tRNA-ribosyltransferase
2392	 61.31	0	2537628..2538056	-	142	116252160	-	RL2408	-	hypothetical protein
2393	 66.90	+1	2538138..2539403	-	421	116252161	fabF	RL2409	-	3-oxoacyl-(acyl carrier protein) synthase II
2394	 62.13	0	2539417..2539923	-	168	116252162	-	RL2410	-	putative transcriptional regulatory protein
2395	 61.39	0	2540002..2540304	-	100	116252163	-	RL2411	-	putative transmembrane protein
2396	 58.83	0	2540434..2542296	-	620	116252164	-	RL2412	-	putative calcium binding protein
2397	 60.60	0	2542554..2544926	+	790	116252165	-	RL2413	-	putative glycosidase
2398	 59.82	0	2544941..2545159	-	72	116252166	-	RL2414	-	hypothetical protein
2399	 62.05	0	2545282..2545584	-	100	116252167	-	RL2415	-	hypothetical protein
2400	 59.60	0	2545741..2546136	+	131	116252168	-	RL2416	-	hypothetical protein
2401	 62.94	0	2546357..2547187	+	276	116252169	-	RL2417	-	hypothetical protein
2402	 66.83	+1	2547184..2548410	+	408	116252170	-	RL2418	-	putative solute-binding component of ABC transporter
2403	 60.93	0	2548403..2549326	+	307	116252171	-	RL2419	-	putative transmembrane component of ABC transporter
2404	 61.77	0	2549323..2550159	+	278	116252172	-	RL2420	-	putative transmembrane component of ABC transporter
2405	 62.16	0	2550186..2551451	+	421	116252173	-	RL2421	-	putative solute-binding component of ABC transporter
2406	 67.48	+1	2551523..2552503	-	326	116252174	-	RL2422	-	putative HTH-type transcriptional regulator
2407	 61.49	0	2552733..2555651	+	972	116252175	-	RL2423	-	peptidase/protease
2408	 63.29	0	2555666..2556346	-	226	116252176	-	RL2424	-	putative acetyltransferase
2409	 65.04	+1	2556343..2556834	-	163	116252177	-	RL2425	-	MarR family transcriptional regulator
2410	 64.20	0	2556951..2558126	-	391	116252178	-	RL2426	-	putative transmembrane protein
2411	 65.79	+1	2558360..2559271	+	303	116252179	-	RL2427	-	putative arginase family protein
2412	 59.24	0	2559323..2559982	-	219	116252180	-	RL2428	-	putative transmembrane protein
2413	 62.82	0	2560142..2561650	+	502	116252181	cya	RL2429	-	putative adenylate cyclase
2414	 59.42	0	2561677..2562297	-	206	116252182	-	RL2430	-	hypothetical protein
2415	 62.42	0	2562488..2562817	-	109	116252183	-	RL2430A	-	hypothetical protein
2416	 66.67	+1	2563080..2563538	-	152	116252184	-	RL2431	-	hypothetical protein
2417	 55.21	-1	2563594..2563881	-	95	116252185	-	RL2432	-	hypothetical protein
2418	 59.17	0	2563904..2564383	-	159	116252186	copC	RL2433	-	putative copper oxidase
2419	 61.17	0	2564416..2565762	-	448	116252187	copA	RL2434	-	putative copper-containing oxidase subunit
2420	 61.55	0	2565776..2567242	-	488	116252188	-	RL2435	-	putative efflux protein
2421	 58.00	-1	2567560..2568009	-	149	116252189	-	RL2436	-	putative transmembrane protein
2422	 61.53	0	2568043..2568645	-	200	116252190	-	RL2437	-	putative transmembrane cytochrome b562
2423	 62.75	0	2568734..2569090	-	118	116252191	-	RL2438	-	hypothetical protein
2424	 62.11	0	2569561..2570241	-	226	116252192	-	RL2440	-	putative peroxiredoxin
2425	 63.38	0	2570316..2573570	-	1084	116252193	-	RL2441	-	putative adenylate cyclase
2426	 60.87	0	2573933..2575639	-	568	116252194	ilvI	RL2442	-	putative acetolactate synthase
2427	 60.13	0	2575931..2576833	-	300	116252195	-	RL2443	-	LysR family transcriptional regulator
2428	 62.47	0	2576941..2577750	+	269	116252196	-	RL2444	-	hypothetical protein
2429	 61.18	0	2577900..2579174	+	424	116252197	-	RL2445	-	MFS family sugar transporter
2430	 61.40	0	2579267..2582914	+	1215	116252198	hyuA	RL2446	-	putative hydantoin utilization protein A
2431	 61.11	0	2582932..2583975	-	347	116252199	-	RL2447	-	LacI family transcriptional regulator
2432	 60.33	0	2584365..2585327	+	320	116252200	-	RL2448	-	putative solute-binding component of ABC transporter
2433	 60.77	0	2585407..2586948	+	513	116252201	-	RL2449	-	putative ATP-binding component of ABC transporter
2434	 59.84	0	2586989..2588014	+	341	116252202	-	RL2450	-	putative transmembrane component of ABC transporter
2435	 56.55	-1	2588804..2589574	+	256	116252203	-	RL2452	-	hypothetical protein
2436	 56.92	-1	2589674..2590648	-	324	116252204	-	RL2453	-	putative transposase-related protein
2437	 59.37	0	2590998..2593148	-	716	116252205	-	RL2454	-	putative transmembrane transporter
2438	 61.71	0	2593270..2594580	-	436	116252206	-	RL2455	-	putative epoxide hydrolase
2439	 62.61	0	2594648..2595091	-	147	116252207	-	RL2456	-	putative dioxygenase
2440	 58.81	0	2595394..2596347	+	317	116252208	-	RL2457	-	putative hydrolase
2441	 62.49	0	2596360..2597244	-	294	116252209	-	RL2458	-	LysR family transcriptional regulator
2442	 60.38	0	2597405..2598088	-	227	116252210	-	RL2459	-	putative transmembrane protein
2443	 63.64	0	2598209..2599165	-	318	116252211	-	RL2460	-	hypothetical protein
2444	 62.01	0	2599153..2599860	-	235	116252212	-	RL2461	-	putative kinase inhibitor
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.