IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2128	 60.45	0	2257380..2257733	+	117	116251896	-	RL2136	-	putative transposase-related protein
2129	 58.99	0	2259186..2261255	-	689	116251897	-	RL2138	-	putative transoposon resolvase
2130	 58.24	-1	2261252..2261797	-	181	116251898	-	RL2139	-	hypothetical protein
2131	 57.80	-1	2262055..2263092	+	345	116251899	-	RL2140	-	hypothetical protein
2132	 58.79	0	2263521..2264333	-	270	116251900	-	RL2141	-	hypothetical protein
2133	 61.39	0	2264345..2265253	-	302	116251901	-	RL2142	-	hypothetical protein
2134	 59.56	0	2265590..2265772	+	60	116251902	-	RL2144	-	hypothetical protein
2135	 57.41	-1	2265769..2266092	+	107	116251903	-	RL2145	-	hypothetical protein
2136	 57.76	-1	2266527..2268917	-	796	116251904	-	RL2146	-	putative transmembrane protein
2137	 58.20	-1	2269023..2269400	+	125	116251905	-	RL2147	-	hypothetical protein
2138	 61.05	0	2269384..2269650	-	88	116251906	-	RL2148	-	hypothetical protein
2139	 56.60	-1	2269842..2270129	-	95	116251907	-	RL2149	-	hypothetical protein
2140	 60.02	0	2270747..2271814	-	355	116251908	-	RL2150	-	putative transposase-related protein
2141	 58.65	0	2272138..2272374	+	78	116251909	-	RL2151	-	hypothetical protein
2142	 48.24	-2	2272525..2272779	+	84	116251910	-	RL2152	-	hypothetical protein
2143	 56.48	-1	2273066..2273281	+	71	116251911	-	RL2153	-	hypothetical protein
2144	 57.14	-1	2273578..2274060	-	160	116251912	-	RL2154	-	hypothetical protein
2145	 50.76	-2	2274008..2274334	-	108	116251913	-	RL2155	-	putative transmembrane protein
2146	 53.88	-2	2274708..2276561	-	617	116251914	-	RL2156	-	hypothetical protein
2147	 60.76	0	2276778..2277539	-	253	116251915	-	RL2157	-	hypothetical protein
2148	 58.15	-1	2277660..2279420	-	586	116251916	-	RL2158	-	hypothetical protein
2149	 57.86	-1	2279417..2279575	-	52	116251917	-	RL2159	-	hypothetical protein
2150	 56.02	-1	2279655..2280593	-	312	116251918	-	RL2160	-	hypothetical protein
2151	 59.61	0	2281039..2283504	+	821	116251919	-	RL2161	-	hypothetical protein
2152	 58.85	0	2283499..2284074	-	191	116251920	-	RL2162	-	hypothetical protein
2153	 53.23	-2	2285582..2285968	+	128	116251921	-	RL2163	-	hypothetical protein
2154	 54.01	-2	2285949..2286272	-	107	116251922	-	RL2164	-	hypothetical protein
2155	 57.10	-1	2286391..2287143	-	250	116251923	-	RL2165	-	hypothetical protein
2156	 55.22	-1	2287327..2288121	-	264	116251924	-	RL2166	-	hypothetical protein
2157	 59.40	0	2288144..2288707	+	187	116251925	-	RL2167	-	putative DNA-invertase
2158	 61.05	0	2288820..2289389	+	189	116251926	-	RL2168	-	hypothetical protein
2159	 58.13	-1	2289829..2291082	+	417	116251927	-	RL2169	-	hypothetical protein
2160	 56.62	-1	2291261..2291479	-	72	116251928	-	RL2170	-	hypothetical protein
2161	 55.70	-1	2293244..2295076	-	610	116251929	-	RL2172	-	putative peptidase
2162	 56.30	-1	2295054..2295410	-	118	116251930	-	RL2173	-	hypothetical protein
2163	 54.90	-2	2295429..2296397	-	322	116251931	-	RL2174	-	hypothetical protein
2164	 51.60	-2	2297765..2298421	-	218	116251932	-	RL2175	-	hypothetical protein
2165	 55.81	-1	2298695..2299228	-	177	116251933	-	RL2176	-	hypothetical protein
2166	 60.63	0	2299629..2299976	-	115	116251934	-	RL2177	-	hypothetical protein
2167	 58.83	0	2300118..2302031	+	637	116251935	-	RL2178	-	putative cell division protein
2168	 57.16	-1	2302028..2302795	+	255	116251936	-	RL2179	-	putative phosphatase
2169	 53.82	-2	2302955..2303281	+	108	116251937	-	RL2180	-	putative helix-turn-helix transcriptional regulatory protein
2170	 60.09	0	2303278..2304189	+	303	116251938	-	RL2181	-	hypothetical protein
2171	 59.62	0	2304214..2305704	-	496	116251939	-	RL2182	-	hypothetical protein
2172	 60.66	0	2305729..2306610	-	293	116251940	-	RL2183	-	hypothetical protein
2173	 58.84	0	2306607..2307104	-	165	116251941	-	RL2184	-	hypothetical protein
2174	 60.78	0	2307106..2307564	-	152	116251942	-	RL2185	-	hypothetical protein
2175	 62.00	0	2307561..2308439	-	292	116251943	-	RL2186	-	ATPase
2176	 60.84	0	2308849..2309277	-	142	116251944	-	RL2187	-	hypothetical protein
2177	 59.23	0	2310014..2311330	-	438	116251945	-	RL2188	-	hypothetical protein
2178	 49.77	-2	2311725..2311937	-	70	116251946	-	RL2189	-	hypothetical protein
2179	 60.65	0	2311968..2312183	+	71	116251947	-	RL2190	-	hypothetical protein
2180	 61.03	0	2312221..2312859	+	212	116251948	-	RL2191	-	hypothetical protein
2181	 60.21	0	2312904..2315132	+	742	116251949	-	RL2192	-	putative transposase-related protein
2182	 59.68	0	2315135..2316121	+	328	116251950	-	RL2193	-	hypothetical protein
2183	 59.42	0	2316091..2317938	+	615	116251951	-	RL2194	-	hypothetical protein
2184	 55.77	-1	2318370..2319158	+	262	116251952	-	RL2195	-	hypothetical protein
2185	 59.45	0	2319389..2319679	-	96	116251953	-	RL2196	-	hypothetical protein
2186	 56.41	-1	2320452..2320763	-	103	116251954	-	RL2198	-	hypothetical protein
2187	 62.89	0	2320910..2321359	-	149	116251955	-	RL2199	-	hypothetical protein
2188	 62.39	0	2321449..2322429	+	326	116251956	-	RL2200	-	hypothetical protein
2189	 59.30	0	2322591..2323364	-	257	116251957	aapP	RL2201	-	general L-amino acid transport ATP-binding subunit
2190	 60.43	0	2323400..2324554	-	384	116251958	aapM	RL2202	-	general L-amino acid transport system permease protein
2191	 57.94	-1	2324556..2325758	-	400	116251959	aapQ	RL2203	-	general L-amino acid transport system permease
2192	 58.67	0	2325861..2326886	-	341	116251960	aapJ	RL2204	-	general L-amino acid substrate binding protein
2193	 62.22	0	2327247..2328437	+	396	116251961	metC	RL2205	-	cystathionine beta-lyase
2194	 64.76	0	2328468..2329622	-	384	116251962	-	RL2206	-	putative salicylate hydroxylase
2195	 57.72	-1	2329650..2329895	-	81	116251963	-	RL2207	-	hypothetical protein
2196	 63.49	0	2330054..2330839	+	261	116251964	-	RL2208	-	putative hydrolase
2197	 63.31	0	2330968..2331801	+	277	116251965	cysE	RL2209	-	putative serine acetyltransferase
2198	 52.94	-2	2331942..2332145	+	67	116251966	-	RL2210	-	hypothetical protein
2199	 54.58	-2	2332311..2332790	+	159	116251967	-	RL2211	-	hypothetical protein
2200	 51.52	-2	2333088..2333417	+	109	116251968	clpS	RL2212	-	ATP-dependent Clp protease adaptor protein ClpS
2201	 61.89	0	2333428..2335920	+	830	116251969	clpA	RL2213	-	putative ATP-dependent Clp protease ATP-binding subunit
2202	 57.39	-1	2335994..2336284	-	96	116251970	-	RL2214	-	hypothetical protein
2203	 62.07	0	2336342..2336776	-	144	116251971	-	RL2215	-	HIT family protein
2204	 61.96	0	2336928..2338118	-	396	116251972	-	RL2216	-	hypothetical protein
2205	 61.11	0	2338298..2339017	-	239	116251973	-	RL2217	-	putative glycerophosphoryl diester phosphodiesterase
2206	 62.21	0	2339014..2339484	-	156	116251974	-	RL2218	-	putative endoribonuclease-L-PSP family protein
2207	 60.93	0	2339621..2340457	+	278	116251975	-	RL2219	-	hypothetical protein
2208	 57.05	-1	2340464..2340775	+	103	116251976	-	RL2220	-	hypothetical protein
2209	 61.46	0	2340782..2341549	+	255	116251977	rpsB	RL2221	-	30S ribosomal protein S2
2210	 63.32	0	2341791..2342717	+	308	116251978	tsf	RL2222	-	elongation factor Ts
2211	 61.55	0	2342814..2343536	+	240	116251979	pyrH	RL2223	-	uridylate kinase
2212	 60.25	0	2343701..2344261	+	186	116251980	frr	RL2224	-	ribosome recycling factor
2213	 62.63	0	2344299..2345042	+	247	116251981	uppS	RL2225	-	putative undecaprenyl pyrophosphate synthetase
2214	 61.13	0	2345042..2345872	+	276	116251982	cdsA	RL2226	-	putative phosphatidate cytidylyltransferase
2215	 61.11	0	2345901..2347034	+	377	116251983	ecfE	RL2227	-	putative transmembrane protease
2216	 59.84	0	2347225..2349567	+	780	116251984	-	RL2228	-	putative outer membrane protein
2217	 61.50	0	2349618..2350682	+	354	116251985	lpxD	RL2229	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2218	 55.34	-1	2350675..2351142	+	155	116251986	fabZ	RL2230	-	(3R)-hydroxymyristoyl-ACP dehydratase
2219	 64.84	+1	2351139..2351957	+	272	116251987	lpxA	RL2231	-	UDP-N-acetylglucosamine acyltransferase
2220	 68.59	+2	2351961..2352842	+	293	116251988	-	RL2232	-	hypothetical protein
2221	 63.61	0	2352839..2354017	+	392	116251989	lpxB	RL2233	-	lipid-A-disaccharide synthase
2222	 60.00	0	2354049..2355338	-	429	116251990	gltA	RL2234	-	type II citrate synthase
2223	 64.02	0	2355569..2358061	+	830	116251991	-	RL2235	-	putative transmembrane DNA uptake competence-related protein
2224	 62.22	0	2358042..2358761	-	239	116251992	lexA	RL2236	-	LexA repressor
2225	 62.89	0	2358956..2359855	+	299	116251993	-	RL2237	-	hypothetical protein
2226	 62.29	0	2359852..2360697	+	281	116251994	kdsA	RL2238	-	2-dehydro-3-deoxyphosphooctonate aldolase
2227	 62.82	0	2360835..2362109	+	424	116251995	eno	RL2239	-	putative enolase
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.