IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2098	 55.51	-1	2217727..2222280	+	1517	116251866	-	RL2105	-	hypothetical protein
2099	 60.54	0	2222591..2223145	-	184	116251867	-	RL2105A	-	hypothetical protein
2100	 53.49	-2	2223311..2224471	-	386	116251868	-	RL2107	-	hypothetical protein
2101	 53.23	-2	2224850..2225809	+	319	116251869	-	RL2108	-	putative transmembrane protein
2102	 63.73	0	2226822..2227127	+	101	116251870	-	RL2109	-	hypothetical protein
2103	 64.09	0	2227238..2229484	+	748	116251871	-	RL2110	-	hypothetical protein
2104	 54.46	-2	2230160..2230495	-	111	116251872	-	RL2113	-	hypothetical protein
2105	 54.04	-2	2230492..2230776	-	94	116251873	-	RL2114	-	hypothetical protein
2106	 64.72	0	2230954..2231724	+	256	116251874	-	RL2115	-	hypothetical protein
2107	 63.17	0	2231816..2233159	+	447	116251875	-	RL2116	-	hypothetical protein
2108	 60.47	0	2233156..2236416	+	1086	116251876	dnaE	RL2117	-	putative DNA polymerase III subunit
2109	 49.71	-2	2236744..2237256	-	170	116251877	-	RL2117A	-	hypothetical protein
2110	 57.57	-1	2237653..2238696	+	347	116251878	-	RL2118	-	putative transmembrane protein
2111	 52.21	-2	2239042..2239629	+	195	116251879	-	RL2119	-	hypothetical protein
2112	 59.30	0	2240197..2240970	+	257	116251880	-	RL2120	-	hypothetical protein
2113	 58.75	0	2241358..2242203	+	281	116251881	-	RL2121	-	putative transmembrane protein
2114	 55.40	-1	2242289..2243344	+	351	116251882	-	RL2122	-	putative transmembrane protein
2115	 47.22	-2	2243365..2243544	+	59	116251883	-	RL2123	-	hypothetical protein
2116	 55.06	-1	2243632..2244174	+	180	116251884	-	RL2124	-	putative transmembrane protein
2117	 51.37	-2	2244332..2244952	+	206	116251885	-	RL2125	-	hypothetical protein
2118	 59.26	0	2245152..2245340	+	62	116251886	-	RL2126	-	hypothetical protein
2119	 52.31	-2	2245494..2245925	-	143	116251887	-	RL2127	-	putative transmembrane protein
2120	 52.04	-2	2246396..2247325	+	309	116251888	-	RL2128	-	hypothetical protein
2121	 62.18	0	2247554..2248288	+	244	116251889	-	RL2129	-	hypothetical protein
2122	 61.06	0	2248300..2248959	+	219	116251890	-	RL2130	-	hypothetical protein
2123	 53.65	-2	2249238..2250551	+	437	116251891	-	RL2131	-	hypothetical protein
2124	 57.94	-1	2250685..2256162	+	1825	116251892	-	RL2132	-	hypothetical protein
2125	 53.92	-2	2256297..2256500	+	67	116251893	-	RL2133	-	hypothetical protein
2126	 57.38	-1	2256617..2256982	-	121	116251894	-	RL2134	-	hypothetical protein
2127	 64.87	+1	2256994..2257383	+	129	116251895	-	RL2135	-	putative transposase-related protein
2128	 60.45	0	2257380..2257733	+	117	116251896	-	RL2136	-	putative transposase-related protein
2129	 58.99	0	2259186..2261255	-	689	116251897	-	RL2138	-	putative transoposon resolvase
2130	 58.24	-1	2261252..2261797	-	181	116251898	-	RL2139	-	hypothetical protein
2131	 57.80	-1	2262055..2263092	+	345	116251899	-	RL2140	-	hypothetical protein
2132	 58.79	0	2263521..2264333	-	270	116251900	-	RL2141	-	hypothetical protein
2133	 61.39	0	2264345..2265253	-	302	116251901	-	RL2142	-	hypothetical protein
2134	 59.56	0	2265590..2265772	+	60	116251902	-	RL2144	-	hypothetical protein
2135	 57.41	-1	2265769..2266092	+	107	116251903	-	RL2145	-	hypothetical protein
2136	 57.76	-1	2266527..2268917	-	796	116251904	-	RL2146	-	putative transmembrane protein
2137	 58.20	-1	2269023..2269400	+	125	116251905	-	RL2147	-	hypothetical protein
2138	 61.05	0	2269384..2269650	-	88	116251906	-	RL2148	-	hypothetical protein
2139	 56.60	-1	2269842..2270129	-	95	116251907	-	RL2149	-	hypothetical protein
2140	 60.02	0	2270747..2271814	-	355	116251908	-	RL2150	-	putative transposase-related protein
2141	 58.65	0	2272138..2272374	+	78	116251909	-	RL2151	-	hypothetical protein
2142	 48.24	-2	2272525..2272779	+	84	116251910	-	RL2152	-	hypothetical protein
2143	 56.48	-1	2273066..2273281	+	71	116251911	-	RL2153	-	hypothetical protein
2144	 57.14	-1	2273578..2274060	-	160	116251912	-	RL2154	-	hypothetical protein
2145	 50.76	-2	2274008..2274334	-	108	116251913	-	RL2155	-	putative transmembrane protein
2146	 53.88	-2	2274708..2276561	-	617	116251914	-	RL2156	-	hypothetical protein
2147	 60.76	0	2276778..2277539	-	253	116251915	-	RL2157	-	hypothetical protein
2148	 58.15	-1	2277660..2279420	-	586	116251916	-	RL2158	-	hypothetical protein
2149	 57.86	-1	2279417..2279575	-	52	116251917	-	RL2159	-	hypothetical protein
2150	 56.02	-1	2279655..2280593	-	312	116251918	-	RL2160	-	hypothetical protein
2151	 59.61	0	2281039..2283504	+	821	116251919	-	RL2161	-	hypothetical protein
2152	 58.85	0	2283499..2284074	-	191	116251920	-	RL2162	-	hypothetical protein
2153	 53.23	-2	2285582..2285968	+	128	116251921	-	RL2163	-	hypothetical protein
2154	 54.01	-2	2285949..2286272	-	107	116251922	-	RL2164	-	hypothetical protein
2155	 57.10	-1	2286391..2287143	-	250	116251923	-	RL2165	-	hypothetical protein
2156	 55.22	-1	2287327..2288121	-	264	116251924	-	RL2166	-	hypothetical protein
2157	 59.40	0	2288144..2288707	+	187	116251925	-	RL2167	-	putative DNA-invertase
2158	 61.05	0	2288820..2289389	+	189	116251926	-	RL2168	-	hypothetical protein
2159	 58.13	-1	2289829..2291082	+	417	116251927	-	RL2169	-	hypothetical protein
2160	 56.62	-1	2291261..2291479	-	72	116251928	-	RL2170	-	hypothetical protein
2161	 55.70	-1	2293244..2295076	-	610	116251929	-	RL2172	-	putative peptidase
2162	 56.30	-1	2295054..2295410	-	118	116251930	-	RL2173	-	hypothetical protein
2163	 54.90	-2	2295429..2296397	-	322	116251931	-	RL2174	-	hypothetical protein
2164	 51.60	-2	2297765..2298421	-	218	116251932	-	RL2175	-	hypothetical protein
2165	 55.81	-1	2298695..2299228	-	177	116251933	-	RL2176	-	hypothetical protein
2166	 60.63	0	2299629..2299976	-	115	116251934	-	RL2177	-	hypothetical protein
2167	 58.83	0	2300118..2302031	+	637	116251935	-	RL2178	-	putative cell division protein
2168	 57.16	-1	2302028..2302795	+	255	116251936	-	RL2179	-	putative phosphatase
2169	 53.82	-2	2302955..2303281	+	108	116251937	-	RL2180	-	putative helix-turn-helix transcriptional regulatory protein
2170	 60.09	0	2303278..2304189	+	303	116251938	-	RL2181	-	hypothetical protein
2171	 59.62	0	2304214..2305704	-	496	116251939	-	RL2182	-	hypothetical protein
2172	 60.66	0	2305729..2306610	-	293	116251940	-	RL2183	-	hypothetical protein
2173	 58.84	0	2306607..2307104	-	165	116251941	-	RL2184	-	hypothetical protein
2174	 60.78	0	2307106..2307564	-	152	116251942	-	RL2185	-	hypothetical protein
2175	 62.00	0	2307561..2308439	-	292	116251943	-	RL2186	-	ATPase
2176	 60.84	0	2308849..2309277	-	142	116251944	-	RL2187	-	hypothetical protein
2177	 59.23	0	2310014..2311330	-	438	116251945	-	RL2188	-	hypothetical protein
2178	 49.77	-2	2311725..2311937	-	70	116251946	-	RL2189	-	hypothetical protein
2179	 60.65	0	2311968..2312183	+	71	116251947	-	RL2190	-	hypothetical protein
2180	 61.03	0	2312221..2312859	+	212	116251948	-	RL2191	-	hypothetical protein
2181	 60.21	0	2312904..2315132	+	742	116251949	-	RL2192	-	putative transposase-related protein
2182	 59.68	0	2315135..2316121	+	328	116251950	-	RL2193	-	hypothetical protein
2183	 59.42	0	2316091..2317938	+	615	116251951	-	RL2194	-	hypothetical protein
2184	 55.77	-1	2318370..2319158	+	262	116251952	-	RL2195	-	hypothetical protein
2185	 59.45	0	2319389..2319679	-	96	116251953	-	RL2196	-	hypothetical protein
2186	 56.41	-1	2320452..2320763	-	103	116251954	-	RL2198	-	hypothetical protein
2187	 62.89	0	2320910..2321359	-	149	116251955	-	RL2199	-	hypothetical protein
2188	 62.39	0	2321449..2322429	+	326	116251956	-	RL2200	-	hypothetical protein
2189	 59.30	0	2322591..2323364	-	257	116251957	aapP	RL2201	-	general L-amino acid transport ATP-binding subunit
2190	 60.43	0	2323400..2324554	-	384	116251958	aapM	RL2202	-	general L-amino acid transport system permease protein
2191	 57.94	-1	2324556..2325758	-	400	116251959	aapQ	RL2203	-	general L-amino acid transport system permease
2192	 58.67	0	2325861..2326886	-	341	116251960	aapJ	RL2204	-	general L-amino acid substrate binding protein
2193	 62.22	0	2327247..2328437	+	396	116251961	metC	RL2205	-	cystathionine beta-lyase
2194	 64.76	0	2328468..2329622	-	384	116251962	-	RL2206	-	putative salicylate hydroxylase
2195	 57.72	-1	2329650..2329895	-	81	116251963	-	RL2207	-	hypothetical protein
2196	 63.49	0	2330054..2330839	+	261	116251964	-	RL2208	-	putative hydrolase
2197	 63.31	0	2330968..2331801	+	277	116251965	cysE	RL2209	-	putative serine acetyltransferase
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.