IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2060	 62.56	0	2185542..2186369	-	275	116251828	radC	RL2068	-	DNA repair protein RadC
2061	 63.20	0	2186377..2187213	-	278	116251829	map	RL2069	-	methionine aminopeptidase
2062	 66.21	+1	2187461..2188120	+	219	116251830	-	RL2070	-	TetR family transcriptional regulator
2063	 57.92	-1	2188242..2188424	+	60	116251831	-	RL2071	-	putative transmembrane protein
2064	 60.66	0	2188421..2188753	+	110	116251832	-	RL2072	-	putative transmembrane protein
2065	 62.22	0	2188690..2189184	-	164	116251833	ruvX	RL2073	-	putative Holliday junction resolvase
2066	 59.72	0	2189466..2190170	+	234	116251834	-	RL2074	-	metal-dependent hydrolase
2067	 60.07	0	2190240..2190527	+	95	116251835	gatC	RL2075	-	putative glutamyl-tRNA(Gln) amidotransferase subunit C
2068	 62.62	0	2190584..2192065	+	493	116251836	gatA	RL2076	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
2069	 60.88	0	2192056..2192556	+	166	116251837	-	RL2077	-	putative acetyltransferase
2070	 64.49	0	2192579..2192854	+	91	116251838	-	RL2078	-	hypothetical protein
2071	 59.30	0	2192904..2193161	-	85	116251839	-	RL2079	-	hypothetical protein
2072	 60.30	0	2193448..2193981	+	177	116251840	-	RL2080	-	putative acetyltransferase
2073	 57.05	-1	2193986..2194297	-	103	116251841	-	RL2081	-	putative transmembrane protein
2074	 61.14	0	2194427..2195929	+	500	116251842	gatB	RL2082	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2075	 60.12	0	2195933..2196436	+	167	116251843	-	RL2083	-	putative acetyltransferase
2076	 63.29	0	2196441..2196914	+	157	116251844	-	RL2084	-	putative acetyltransferase
2077	 61.65	0	2197018..2197416	+	132	116251845	-	RL2085	-	NADH dehydrogenase
2078	 62.13	0	2197532..2197972	+	146	116251846	-	RL2086	-	hypothetical protein
2079	 60.00	0	2198104..2198718	-	204	116251847	aat	RL2087	-	leucyl/phenylalanyl-tRNA--protein transferase
2080	 62.39	0	2198726..2200081	-	451	116251848	accC	RL2088	-	acetyl-CoA carboxylase biotin carboxylase subunit
2081	 62.00	0	2200086..2200556	-	156	116251849	accB	RL2089	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
2082	 58.90	0	2200577..2201014	-	145	116251850	-	RL2090	-	3-dehydroquinate dehydratase
2083	 59.55	0	2201176..2201934	-	252	116251851	-	RL2091	-	putative outer membrane protein
2084	 62.71	0	2202116..2203303	+	395	116251852	aspB	RL2092	-	putative aspartate aminotransferase
2085	 64.80	+1	2203343..2204683	-	446	116251853	-	RL2093	-	hypothetical protein
2086	 59.60	0	2204891..2206771	-	626	116251854	phaC	RL2094	-	putative poly(3-hydroxyalkanoate) polymerase (PHA synthase)
2087	 64.98	+1	2206877..2207290	+	137	116251855	-	RL2095	-	hypothetical protein
2088	 61.63	0	2207500..2208729	+	409	116251856	-	RL2096	-	aminotransferase
2089	 62.52	0	2208796..2210121	+	441	116251857	hom	RL2097	-	homoserine dehydrogenase
2090	 56.91	-1	2210281..2210526	+	81	116251858	-	RL2098	-	putative transmembrane protein
2091	 66.61	+1	2210649..2212409	+	586	116251859	recJ	RL2099	-	putative single-stranded-DNA-specific exonuclease
2092	 65.92	+1	2213207..2214274	-	355	116251860	-	RL2100	-	hypothetical protein
2093	 58.73	0	2214442..2214882	-	146	116251861	-	RL2101	-	putative glyoxalase
2094	 63.04	0	2215078..2215656	+	192	116251862	cspA	RL2102	-	putative cold shock protein
2095	 58.90	0	2215659..2216147	+	162	116251863	-	RL2103	-	hypothetical protein
2096	 54.92	-2	2216288..2216602	+	104	116251864	-	RL2103A	-	hypothetical protein
2097	 59.15	0	2216924..2217229	+	101	116251865	-	RL2104	-	putative NADH-ubiquinone oxidoreductase subunit
2098	 55.51	-1	2217727..2222280	+	1517	116251866	-	RL2105	-	hypothetical protein
2099	 60.54	0	2222591..2223145	-	184	116251867	-	RL2105A	-	hypothetical protein
2100	 53.49	-2	2223311..2224471	-	386	116251868	-	RL2107	-	hypothetical protein
2101	 53.23	-2	2224850..2225809	+	319	116251869	-	RL2108	-	putative transmembrane protein
2102	 63.73	0	2226822..2227127	+	101	116251870	-	RL2109	-	hypothetical protein
2103	 64.09	0	2227238..2229484	+	748	116251871	-	RL2110	-	hypothetical protein
2104	 54.46	-2	2230160..2230495	-	111	116251872	-	RL2113	-	hypothetical protein
2105	 54.04	-2	2230492..2230776	-	94	116251873	-	RL2114	-	hypothetical protein
2106	 64.72	0	2230954..2231724	+	256	116251874	-	RL2115	-	hypothetical protein
2107	 63.17	0	2231816..2233159	+	447	116251875	-	RL2116	-	hypothetical protein
2108	 60.47	0	2233156..2236416	+	1086	116251876	dnaE	RL2117	-	putative DNA polymerase III subunit
2109	 49.71	-2	2236744..2237256	-	170	116251877	-	RL2117A	-	hypothetical protein
2110	 57.57	-1	2237653..2238696	+	347	116251878	-	RL2118	-	putative transmembrane protein
2111	 52.21	-2	2239042..2239629	+	195	116251879	-	RL2119	-	hypothetical protein
2112	 59.30	0	2240197..2240970	+	257	116251880	-	RL2120	-	hypothetical protein
2113	 58.75	0	2241358..2242203	+	281	116251881	-	RL2121	-	putative transmembrane protein
2114	 55.40	-1	2242289..2243344	+	351	116251882	-	RL2122	-	putative transmembrane protein
2115	 47.22	-2	2243365..2243544	+	59	116251883	-	RL2123	-	hypothetical protein
2116	 55.06	-1	2243632..2244174	+	180	116251884	-	RL2124	-	putative transmembrane protein
2117	 51.37	-2	2244332..2244952	+	206	116251885	-	RL2125	-	hypothetical protein
2118	 59.26	0	2245152..2245340	+	62	116251886	-	RL2126	-	hypothetical protein
2119	 52.31	-2	2245494..2245925	-	143	116251887	-	RL2127	-	putative transmembrane protein
2120	 52.04	-2	2246396..2247325	+	309	116251888	-	RL2128	-	hypothetical protein
2121	 62.18	0	2247554..2248288	+	244	116251889	-	RL2129	-	hypothetical protein
2122	 61.06	0	2248300..2248959	+	219	116251890	-	RL2130	-	hypothetical protein
2123	 53.65	-2	2249238..2250551	+	437	116251891	-	RL2131	-	hypothetical protein
2124	 57.94	-1	2250685..2256162	+	1825	116251892	-	RL2132	-	hypothetical protein
2125	 53.92	-2	2256297..2256500	+	67	116251893	-	RL2133	-	hypothetical protein
2126	 57.38	-1	2256617..2256982	-	121	116251894	-	RL2134	-	hypothetical protein
2127	 64.87	+1	2256994..2257383	+	129	116251895	-	RL2135	-	putative transposase-related protein
2128	 60.45	0	2257380..2257733	+	117	116251896	-	RL2136	-	putative transposase-related protein
2129	 58.99	0	2259186..2261255	-	689	116251897	-	RL2138	-	putative transoposon resolvase
2130	 58.24	-1	2261252..2261797	-	181	116251898	-	RL2139	-	hypothetical protein
2131	 57.80	-1	2262055..2263092	+	345	116251899	-	RL2140	-	hypothetical protein
2132	 58.79	0	2263521..2264333	-	270	116251900	-	RL2141	-	hypothetical protein
2133	 61.39	0	2264345..2265253	-	302	116251901	-	RL2142	-	hypothetical protein
2134	 59.56	0	2265590..2265772	+	60	116251902	-	RL2144	-	hypothetical protein
2135	 57.41	-1	2265769..2266092	+	107	116251903	-	RL2145	-	hypothetical protein
2136	 57.76	-1	2266527..2268917	-	796	116251904	-	RL2146	-	putative transmembrane protein
2137	 58.20	-1	2269023..2269400	+	125	116251905	-	RL2147	-	hypothetical protein
2138	 61.05	0	2269384..2269650	-	88	116251906	-	RL2148	-	hypothetical protein
2139	 56.60	-1	2269842..2270129	-	95	116251907	-	RL2149	-	hypothetical protein
2140	 60.02	0	2270747..2271814	-	355	116251908	-	RL2150	-	putative transposase-related protein
2141	 58.65	0	2272138..2272374	+	78	116251909	-	RL2151	-	hypothetical protein
2142	 48.24	-2	2272525..2272779	+	84	116251910	-	RL2152	-	hypothetical protein
2143	 56.48	-1	2273066..2273281	+	71	116251911	-	RL2153	-	hypothetical protein
2144	 57.14	-1	2273578..2274060	-	160	116251912	-	RL2154	-	hypothetical protein
2145	 50.76	-2	2274008..2274334	-	108	116251913	-	RL2155	-	putative transmembrane protein
2146	 53.88	-2	2274708..2276561	-	617	116251914	-	RL2156	-	hypothetical protein
2147	 60.76	0	2276778..2277539	-	253	116251915	-	RL2157	-	hypothetical protein
2148	 58.15	-1	2277660..2279420	-	586	116251916	-	RL2158	-	hypothetical protein
2149	 57.86	-1	2279417..2279575	-	52	116251917	-	RL2159	-	hypothetical protein
2150	 56.02	-1	2279655..2280593	-	312	116251918	-	RL2160	-	hypothetical protein
2151	 59.61	0	2281039..2283504	+	821	116251919	-	RL2161	-	hypothetical protein
2152	 58.85	0	2283499..2284074	-	191	116251920	-	RL2162	-	hypothetical protein
2153	 53.23	-2	2285582..2285968	+	128	116251921	-	RL2163	-	hypothetical protein
2154	 54.01	-2	2285949..2286272	-	107	116251922	-	RL2164	-	hypothetical protein
2155	 57.10	-1	2286391..2287143	-	250	116251923	-	RL2165	-	hypothetical protein
2156	 55.22	-1	2287327..2288121	-	264	116251924	-	RL2166	-	hypothetical protein
2157	 59.40	0	2288144..2288707	+	187	116251925	-	RL2167	-	putative DNA-invertase
2158	 61.05	0	2288820..2289389	+	189	116251926	-	RL2168	-	hypothetical protein
2159	 58.13	-1	2289829..2291082	+	417	116251927	-	RL2169	-	hypothetical protein
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.