IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1885	 66.93	+1	1983953..1984330	+	125	116251653	-	RL1888	-	hypothetical protein
1886	 67.07	+1	1984442..1985920	+	492	116251654	-	RL1889	-	putative multicopper oxidase
1887	 59.77	0	1985977..1986237	+	86	116251655	-	RL1890	-	putative transmembrane protein
1888	 63.42	0	1986230..1986907	+	225	116251656	-	RL1891	-	putative transmembrane protein
1889	 67.34	+1	1986900..1989122	+	740	116251657	-	RL1892	-	putative cation transporting P-type ATPase
1890	 63.41	0	1989134..1989655	+	173	116251658	-	RL1893	-	putative transmembrane protein
1891	 63.96	0	1989754..1990122	+	122	116251659	-	RL1894	-	hypothetical protein
1892	 64.63	0	1990257..1990649	+	130	116251660	-	RL1895	-	hypothetical protein
1893	 54.43	-2	1991107..1992111	+	334	116251661	-	RL1896	-	hypothetical protein
1894	 57.13	-1	1992151..1993974	-	607	116251662	-	RL1897	-	hypothetical protein
1895	 56.26	-1	1993971..1995017	-	348	116251663	-	RL1898	-	hypothetical protein
1896	 57.87	-1	1995014..1997263	-	749	116251664	-	RL1899	-	putative transposase related protein
1897	 58.86	0	1997268..1997984	-	238	116251665	-	RL1900	-	hypothetical protein
1898	 52.27	-2	1997998..1998129	-	43	116251666	-	RL1901	-	hypothetical protein
1899	 62.70	0	1998227..1998655	-	142	116251667	-	RL1902	-	hypothetical protein
1900	 62.48	0	1999427..2000239	-	270	116251668	-	RL1904	-	hypothetical protein
1901	 60.91	0	2000319..2000909	-	196	116251669	-	RL1905	-	hypothetical protein
1902	 58.45	0	2001387..2001800	+	137	116251670	-	RL1906	-	hypothetical protein
1903	 61.11	0	2001843..2002976	-	377	116251671	-	RL1907	-	putative transmembrane protein
1904	 64.59	0	2002978..2004900	-	640	116251672	-	RL1908	-	putative transmembrane ion channel protein
1905	 59.57	0	2004907..2005920	-	337	116251673	-	RL1909	-	putative nonspecific acid phosphataser
1906	 64.08	0	2005917..2006960	-	347	116251674	-	RL1910	-	hypothetical protein
1907	 58.32	0	2006989..2008605	-	538	116251675	-	RL1911	-	putative arylsulfatase
1908	 64.36	0	2008848..2010149	-	433	116251676	-	RL1912	-	hypothetical protein
1909	 63.96	0	2010146..2011699	-	517	116251677	-	RL1913	-	putative transmembrane protein
1910	 65.05	+1	2011696..2012685	-	329	116251678	-	RL1914	-	putative transmembrane protein
1911	 63.60	0	2012672..2013193	-	173	116251679	-	RL1915	-	hypothetical protein
1912	 64.43	0	2013193..2014131	-	312	116251680	-	RL1916	-	hypothetical protein
1913	 60.84	0	2014128..2015105	-	325	116251681	-	RL1917	-	hypothetical protein
1914	 60.55	0	2015162..2016811	-	549	116251682	-	RL1918	-	putative exported arylsulfatase protein
1915	 63.75	0	2016978..2018210	-	410	116251683	-	RL1919	-	hypothetical protein
1916	 62.94	0	2018211..2019203	-	330	116251684	-	RL1920	-	hypothetical protein
1917	 64.63	0	2019225..2021822	-	865	116251685	-	RL1921	-	hypothetical protein
1918	 64.40	0	2021906..2023627	-	573	116251686	-	RL1922	-	hypothetical protein
1919	 60.66	0	2023719..2024051	-	110	116251687	-	RL1923	-	hypothetical protein
1920	 61.65	0	2024203..2025000	+	265	116251688	-	RL1924	-	hypothetical protein
1921	 60.86	0	2025163..2026677	+	504	116251689	-	RL1925	-	hypothetical protein
1922	 57.51	-1	2026740..2027777	+	345	116251690	-	RL1926	-	hypothetical protein
1923	 64.60	0	2028304..2032176	+	1290	116251691	-	RL1927	-	putative adhesin autotransporter
1924	 57.92	-1	2032252..2032434	+	60	116251692	-	RL1928	-	hypothetical protein
1925	 59.78	0	2032564..2033187	+	207	116251693	-	RL1929	-	hypothetical protein
1926	 62.14	0	2033184..2035061	+	625	116251694	-	RL1930	-	putative ATP-dependent hydrolase protein
1927	 59.74	0	2035058..2035360	+	100	116251695	-	RL1931	-	hypothetical protein
1928	 60.57	0	2035350..2037350	-	666	116251696	-	RL1932	-	putative modification methylase
1929	 58.44	0	2037505..2038914	+	469	116251697	-	RL1933	-	hypothetical protein
1930	 60.30	0	2038918..2039451	-	177	116251698	-	RL1934	-	hypothetical protein
1931	 56.74	-1	2039564..2040631	-	355	116251699	-	RL1935	-	hypothetical protein
1932	 56.46	-1	2040618..2041430	-	270	116251700	-	RL1936	-	hypothetical protein
1933	 60.85	0	2041740..2041928	-	62	116251701	-	RL1937	-	hypothetical protein
1934	 59.83	0	2041993..2042826	-	277	116251702	-	RL1938	-	putative phosphatase
1935	 55.81	-1	2042946..2043341	+	131	116251703	-	RL1939	-	hypothetical protein
1936	 58.36	0	2043391..2044413	-	340	116251704	-	RL1940	-	hypothetical protein
1937	 53.37	-2	2045372..2045890	+	172	116251705	-	RL1941	-	hypothetical protein
1938	 60.29	0	2046069..2046680	-	203	116251706	-	RL1942	-	hypothetical protein
1939	 61.06	0	2046747..2047994	-	415	116251707	-	RL1943	-	hypothetical protein
1940	 60.13	0	2048005..2049198	-	397	116251708	-	RL1944	-	hypothetical protein
1941	 62.13	0	2049554..2053369	-	1271	116251709	-	RL1945	-	ribonucleotide-diphosphate reductase subunit alpha
1942	 48.94	-2	2053492..2053773	+	93	116251710	-	RL1946	-	hypothetical protein
1943	 58.04	-1	2054009..2054599	-	196	116251711	-	RL1947	-	hypothetical protein
1944	 61.21	0	2054896..2055390	-	164	116251712	gpt	RL1948	-	xanthine-guanine phosphoribosyltransferase
1945	 61.21	0	2055572..2056414	-	280	116251713	-	RL1949	-	putative universal stress family protein
1946	 62.29	0	2056523..2057299	-	258	116251714	-	RL1950	-	putative molybdenum cofactor biosynthesis protein
1947	 64.15	0	2057585..2058181	+	198	116251715	wrbA	RL1951	-	TrpR binding protein WrbA
1948	 58.39	0	2058772..2059206	-	144	116251716	-	RL1952	-	putative transmembrane protein
1949	 61.87	0	2059345..2060595	+	416	116251717	ilvA	RL1953	-	threonine dehydratase
1950	 58.72	0	2060633..2060959	+	108	116251718	-	RL1954	-	hypothetical protein
1951	 60.85	0	2061195..2062466	+	423	116251719	-	RL1955	-	putative transmembrane GGDEF sensory box protein
1952	 57.60	-1	2062636..2063892	+	418	116251720	-	RL1956	-	putative transmembrane protein
1953	 65.12	+1	2063951..2064727	-	258	116251721	-	RL1957	-	putative short-chain dehydrogenase/oxidoreductase
1954	 63.19	0	2064890..2065465	+	191	116251722	-	RL1958	-	TetR family transcriptional regulator
1955	 62.93	0	2065513..2066127	-	204	116251723	acpD	RL1959	-	putative acyl carrier protein phosphodiesterase
1956	 62.33	0	2066267..2067235	+	322	116251724	-	RL1960	-	LysR family transcriptional regulator
1957	 61.45	0	2067278..2069290	-	670	116251725	cpdB	RL1961	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
1958	 62.66	0	2069446..2070168	+	240	116251726	-	RL1962	-	putative transmembrane protein
1959	 58.77	0	2070138..2070542	-	134	116251727	-	RL1963	-	hypothetical protein
1960	 59.98	0	2070628..2071509	-	293	116251728	-	RL1964	-	putative transmembrane protein
1961	 59.09	0	2071689..2072150	-	153	116251729	-	RL1965	-	AsnC family transcriptional regulator
1962	 65.33	+1	2072307..2073425	+	372	116251730	ald	RL1966	-	putative alanine dehydrogenase
1963	 58.19	-1	2073556..2074581	+	341	116251731	-	RL1967	-	AraC family transcriptional regulator
1964	 55.28	-1	2074610..2074732	+	40	116251732	-	RL1968	-	hypothetical protein
1965	 59.07	0	2074736..2075485	+	249	116251733	-	RL1969	-	putative short-chain dehydrogenase/reductase
1966	 57.74	-1	2075552..2076100	+	182	116251734	-	RL1970	-	putative flavin reductase
1967	 60.00	0	2076164..2076448	+	94	116251735	-	RL1971	-	hypothetical protein
1968	 62.70	0	2076502..2077005	-	167	116251736	-	RL1972	-	hypothetical protein
1969	 60.02	0	2077277..2078344	-	355	116251737	-	RL1973	-	putative transposase for insertion sequence element
1970	 59.64	0	2078881..2079705	+	274	116251738	-	RL1974	-	hypothetical protein
1971	 59.56	0	2079730..2079954	+	74	116251739	-	RL1975	-	hypothetical protein
1972	 60.96	0	2079985..2080545	-	186	116251740	-	RL1976	-	hypothetical protein
1973	 64.71	0	2080551..2081420	-	289	116251741	sseA	RL1977	-	putative 3-mercaptopyruvate sulfurtransferase
1974	 62.33	0	2082183..2083220	-	345	116251742	cysB	RL1979	-	cysteine synthase A
1975	 63.48	0	2083447..2084106	+	219	116251743	-	RL1980	-	putative transcriptional regulator
1976	 61.15	0	2084206..2085039	+	277	116251744	-	RL1981	-	putative short-chain dehydrogenase/oxiroreductase
1977	 60.32	0	2085040..2086173	-	377	116251745	cfa	RL1982	-	putative cyclopropane-fatty-acyl-phospholipid synthase
1978	 62.32	0	2086499..2087350	-	283	116251746	-	RL1983	-	hypothetical protein
1979	 61.50	0	2087347..2088681	-	444	116251747	-	RL1984	-	hypothetical protein
1980	 62.05	0	2088678..2090129	-	483	116251748	phr	RL1985	-	putative deoxyribodipyrimidine photo-lyase
1981	 62.29	0	2090280..2090576	-	98	116251749	-	RL1986	-	hypothetical protein
1982	 61.01	0	2090819..2091136	+	105	116251750	-	RL1987	-	hypothetical protein
1983	 62.54	0	2091250..2091927	+	225	116251751	-	RL1988	-	putative glycerol phosphatase
1984	 63.92	0	2091965..2094622	-	885	116251752	nasA	RL1989	-	putative assimilatory nitrate reductase
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.