IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1855	 58.63	0	1950120..1951475	-	451	116251623	-	RL1858	-	putative protease
1856	 58.51	0	1952152..1953942	+	596	116251624	-	RL1859	-	hypothetical protein
1857	 57.45	-1	1954004..1954795	-	263	116251625	phhA	RL1860	-	phenylalanine 4-monooxygenase
1858	 57.79	-1	1954919..1955380	+	153	116251626	-	RL1861	-	AsnC family transcriptional regulator
1859	 58.54	0	1955429..1955908	-	159	116251627	-	RL1862	-	AsnC family transcriptional regulator
1860	 58.65	0	1956039..1957148	+	369	116251628	-	RL1863	-	putative 4-hydroxyphenylpyruvate dioxygenase
1861	 59.84	0	1957210..1958571	+	453	116251629	hmgA	RL1864	-	homogentisate 1,2-dioxygenase
1862	 63.65	0	1958612..1959637	+	341	116251630	-	RL1865	-	putative hydrolase
1863	 58.77	0	1959634..1960266	+	210	116251631	-	RL1866	-	putative maleylacetoacetate isomerase
1864	 59.67	0	1960624..1961952	+	442	116251632	-	RL1867	-	hypothetical protein
1865	 59.23	0	1962155..1962988	-	277	116251633	-	RL1868	-	putative universal stress related protein
1866	 62.71	0	1963055..1965736	-	893	116251634	-	RL1869	-	putative cation-transporting ATPase
1867	 57.41	-1	1965973..1966296	+	107	116251635	dksA	RL1870	-	putative DNAK suppressor protein
1868	 63.77	0	1966325..1968187	+	620	116251636	-	RL1871	-	putative transmembrane cation ATPase transporter
1869	 61.56	0	1968184..1969005	-	273	116251637	-	RL1872	-	putative universal stress response protein
1870	 59.26	0	1969135..1969593	+	152	116251638	-	RL1873	-	putative pyridoxine oxidase protein
1871	 59.41	0	1969640..1970011	+	123	116251639	-	RL1874	-	hypothetical protein
1872	 61.00	0	1970356..1970796	+	146	116251640	-	RL1875	-	putative transmembrane protein
1873	 66.37	+1	1970878..1971873	+	331	116251641	adh	RL1876	-	putative alcohol dehydrogenase
1874	 64.16	0	1971982..1973337	+	451	116251642	-	RL1877	-	putative protease
1875	 60.65	0	1973462..1974109	+	215	116251643	-	RL1878	-	putative peptidoglycan binding protein
1876	 63.28	0	1974453..1976372	-	639	116251644	-	RL1879	-	putative nitrogen fixation two component sensor/regulator fusion transcriptional regulator
1877	 61.09	0	1976350..1977084	-	244	116251645	-	RL1880	-	CRP/FNR family transcriptional regulator
1878	 63.04	0	1977207..1977950	+	247	116251646	-	RL1881	-	putative two-component regulator response regulator transcriptional regulatory protein
1879	 59.23	0	1977913..1978356	-	147	116251647	-	RL1882	-	hypothetical protein
1880	 60.07	0	1978497..1979072	+	191	116251648	hspF	RL1883	-	putative small heat shock protein
1881	 63.27	0	1979151..1979798	-	215	116251649	-	RL1884	-	putative phospholipid binding protein
1882	 63.18	0	1980014..1981648	+	544	116251650	-	RL1885	-	putative beta-lactamase family protein
1883	 62.49	0	1981975..1983147	+	390	116251651	pduW	RL1886	-	putative propionate kinase
1884	 61.11	0	1983626..1983931	+	101	116251652	-	RL1887	-	putative transmembrane protein
1885	 66.93	+1	1983953..1984330	+	125	116251653	-	RL1888	-	hypothetical protein
1886	 67.07	+1	1984442..1985920	+	492	116251654	-	RL1889	-	putative multicopper oxidase
1887	 59.77	0	1985977..1986237	+	86	116251655	-	RL1890	-	putative transmembrane protein
1888	 63.42	0	1986230..1986907	+	225	116251656	-	RL1891	-	putative transmembrane protein
1889	 67.34	+1	1986900..1989122	+	740	116251657	-	RL1892	-	putative cation transporting P-type ATPase
1890	 63.41	0	1989134..1989655	+	173	116251658	-	RL1893	-	putative transmembrane protein
1891	 63.96	0	1989754..1990122	+	122	116251659	-	RL1894	-	hypothetical protein
1892	 64.63	0	1990257..1990649	+	130	116251660	-	RL1895	-	hypothetical protein
1893	 54.43	-2	1991107..1992111	+	334	116251661	-	RL1896	-	hypothetical protein
1894	 57.13	-1	1992151..1993974	-	607	116251662	-	RL1897	-	hypothetical protein
1895	 56.26	-1	1993971..1995017	-	348	116251663	-	RL1898	-	hypothetical protein
1896	 57.87	-1	1995014..1997263	-	749	116251664	-	RL1899	-	putative transposase related protein
1897	 58.86	0	1997268..1997984	-	238	116251665	-	RL1900	-	hypothetical protein
1898	 52.27	-2	1997998..1998129	-	43	116251666	-	RL1901	-	hypothetical protein
1899	 62.70	0	1998227..1998655	-	142	116251667	-	RL1902	-	hypothetical protein
1900	 62.48	0	1999427..2000239	-	270	116251668	-	RL1904	-	hypothetical protein
1901	 60.91	0	2000319..2000909	-	196	116251669	-	RL1905	-	hypothetical protein
1902	 58.45	0	2001387..2001800	+	137	116251670	-	RL1906	-	hypothetical protein
1903	 61.11	0	2001843..2002976	-	377	116251671	-	RL1907	-	putative transmembrane protein
1904	 64.59	0	2002978..2004900	-	640	116251672	-	RL1908	-	putative transmembrane ion channel protein
1905	 59.57	0	2004907..2005920	-	337	116251673	-	RL1909	-	putative nonspecific acid phosphataser
1906	 64.08	0	2005917..2006960	-	347	116251674	-	RL1910	-	hypothetical protein
1907	 58.32	0	2006989..2008605	-	538	116251675	-	RL1911	-	putative arylsulfatase
1908	 64.36	0	2008848..2010149	-	433	116251676	-	RL1912	-	hypothetical protein
1909	 63.96	0	2010146..2011699	-	517	116251677	-	RL1913	-	putative transmembrane protein
1910	 65.05	+1	2011696..2012685	-	329	116251678	-	RL1914	-	putative transmembrane protein
1911	 63.60	0	2012672..2013193	-	173	116251679	-	RL1915	-	hypothetical protein
1912	 64.43	0	2013193..2014131	-	312	116251680	-	RL1916	-	hypothetical protein
1913	 60.84	0	2014128..2015105	-	325	116251681	-	RL1917	-	hypothetical protein
1914	 60.55	0	2015162..2016811	-	549	116251682	-	RL1918	-	putative exported arylsulfatase protein
1915	 63.75	0	2016978..2018210	-	410	116251683	-	RL1919	-	hypothetical protein
1916	 62.94	0	2018211..2019203	-	330	116251684	-	RL1920	-	hypothetical protein
1917	 64.63	0	2019225..2021822	-	865	116251685	-	RL1921	-	hypothetical protein
1918	 64.40	0	2021906..2023627	-	573	116251686	-	RL1922	-	hypothetical protein
1919	 60.66	0	2023719..2024051	-	110	116251687	-	RL1923	-	hypothetical protein
1920	 61.65	0	2024203..2025000	+	265	116251688	-	RL1924	-	hypothetical protein
1921	 60.86	0	2025163..2026677	+	504	116251689	-	RL1925	-	hypothetical protein
1922	 57.51	-1	2026740..2027777	+	345	116251690	-	RL1926	-	hypothetical protein
1923	 64.60	0	2028304..2032176	+	1290	116251691	-	RL1927	-	putative adhesin autotransporter
1924	 57.92	-1	2032252..2032434	+	60	116251692	-	RL1928	-	hypothetical protein
1925	 59.78	0	2032564..2033187	+	207	116251693	-	RL1929	-	hypothetical protein
1926	 62.14	0	2033184..2035061	+	625	116251694	-	RL1930	-	putative ATP-dependent hydrolase protein
1927	 59.74	0	2035058..2035360	+	100	116251695	-	RL1931	-	hypothetical protein
1928	 60.57	0	2035350..2037350	-	666	116251696	-	RL1932	-	putative modification methylase
1929	 58.44	0	2037505..2038914	+	469	116251697	-	RL1933	-	hypothetical protein
1930	 60.30	0	2038918..2039451	-	177	116251698	-	RL1934	-	hypothetical protein
1931	 56.74	-1	2039564..2040631	-	355	116251699	-	RL1935	-	hypothetical protein
1932	 56.46	-1	2040618..2041430	-	270	116251700	-	RL1936	-	hypothetical protein
1933	 60.85	0	2041740..2041928	-	62	116251701	-	RL1937	-	hypothetical protein
1934	 59.83	0	2041993..2042826	-	277	116251702	-	RL1938	-	putative phosphatase
1935	 55.81	-1	2042946..2043341	+	131	116251703	-	RL1939	-	hypothetical protein
1936	 58.36	0	2043391..2044413	-	340	116251704	-	RL1940	-	hypothetical protein
1937	 53.37	-2	2045372..2045890	+	172	116251705	-	RL1941	-	hypothetical protein
1938	 60.29	0	2046069..2046680	-	203	116251706	-	RL1942	-	hypothetical protein
1939	 61.06	0	2046747..2047994	-	415	116251707	-	RL1943	-	hypothetical protein
1940	 60.13	0	2048005..2049198	-	397	116251708	-	RL1944	-	hypothetical protein
1941	 62.13	0	2049554..2053369	-	1271	116251709	-	RL1945	-	ribonucleotide-diphosphate reductase subunit alpha
1942	 48.94	-2	2053492..2053773	+	93	116251710	-	RL1946	-	hypothetical protein
1943	 58.04	-1	2054009..2054599	-	196	116251711	-	RL1947	-	hypothetical protein
1944	 61.21	0	2054896..2055390	-	164	116251712	gpt	RL1948	-	xanthine-guanine phosphoribosyltransferase
1945	 61.21	0	2055572..2056414	-	280	116251713	-	RL1949	-	putative universal stress family protein
1946	 62.29	0	2056523..2057299	-	258	116251714	-	RL1950	-	putative molybdenum cofactor biosynthesis protein
1947	 64.15	0	2057585..2058181	+	198	116251715	wrbA	RL1951	-	TrpR binding protein WrbA
1948	 58.39	0	2058772..2059206	-	144	116251716	-	RL1952	-	putative transmembrane protein
1949	 61.87	0	2059345..2060595	+	416	116251717	ilvA	RL1953	-	threonine dehydratase
1950	 58.72	0	2060633..2060959	+	108	116251718	-	RL1954	-	hypothetical protein
1951	 60.85	0	2061195..2062466	+	423	116251719	-	RL1955	-	putative transmembrane GGDEF sensory box protein
1952	 57.60	-1	2062636..2063892	+	418	116251720	-	RL1956	-	putative transmembrane protein
1953	 65.12	+1	2063951..2064727	-	258	116251721	-	RL1957	-	putative short-chain dehydrogenase/oxidoreductase
1954	 63.19	0	2064890..2065465	+	191	116251722	-	RL1958	-	TetR family transcriptional regulator
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.