IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.51   STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
83	 64.12	0	106182..107201	+	339	116249849	-	RL0083	-	LacI family transcriptional regulator
84	 62.57	0	107329..109185	+	618	116249850	-	RL0084	-	hypothetical protein
85	 62.61	0	109182..110192	+	336	116249851	-	RL0085	-	putative glycerate dehydrogenase
86	 58.84	0	110281..111609	-	442	116249852	-	RL0086	-	GFO/IDH/MocA family oxidoreductase
87	 63.27	0	111710..112534	-	274	116249853	-	RL0087	-	hypothetical protein
88	 65.21	+1	112672..113835	-	387	116249854	-	RL0088	-	hypothetical protein
89	 63.10	0	113839..114987	-	382	116249855	-	RL0089	-	putative oxidoreductase
90	 61.06	0	115119..115796	-	225	116249856	-	RL0090	-	TetR family transcriptional regulator
91	 62.55	0	115995..117281	+	428	116249857	-	RL0091	-	putative ATP-binding component of ABC transporter
92	 59.27	0	117288..118247	+	319	116249858	-	RL0092	-	putative transmembrane component of ABC transporter
93	 59.50	0	118249..119127	+	292	116249859	-	RL0093	-	putative transmembrane component of ABC transporter
94	 61.92	0	119151..120224	+	357	116249860	-	RL0094	-	GFO/IDH/MocA family oxidoreductase
95	 62.67	0	120256..121332	+	358	116249861	-	RL0095	-	putative ATP-binding component of ABC transporter protein
96	 60.51	0	121601..122494	+	297	116249862	-	RL0096	-	hypothetical protein
97	 63.16	0	122495..124945	+	816	116249863	-	RL0097	-	pyruvate dehydrogenase phosphatase regulatory subunit
98	 63.92	0	125075..126532	-	485	116249864	-	RL0098	-	putative mannitol dehydrogenase
99	 64.19	0	126529..127944	-	471	116249865	-	RL0099	-	glucuronate isomerase
100	 61.43	0	128125..128334	+	69	116249866	-	RL0100	-	hypothetical protein
101	 64.84	+1	128390..129871	-	493	116249867	gabD	RL0101	-	succinate-semialdehyde dehydrogenase [NADP+] (SSDH)
102	 64.17	0	130039..131319	-	426	116249868	gabT	RL0102	-	4-aminobutyrate aminotransferase
103	 63.70	0	131486..132295	+	269	116249869	-	RL0103	-	MerR family transcriptional regulator
104	 61.08	0	132535..133161	+	208	116249870	-	RL0104	-	putative ribonuclease
105	 64.62	0	133393..134958	+	521	116249871	-	RL0105	-	hypothetical protein
106	 60.27	0	135131..136834	-	567	116249872	rpsA	RL0106	-	30S ribosomal protein S1
107	 60.96	0	137011..137658	-	215	116249873	cmk	RL0107	-	cytidylate kinase
108	 64.75	0	137731..139089	-	452	116249874	aroA	RL0108	-	3-phosphoshikimate 1-carboxyvinyltransferase
109	 55.21	-1	139366..139749	+	127	116249875	-	RL0109	-	hypothetical protein
110	 53.45	-2	140098..140430	+	110	116249876	-	RL0110	-	hypothetical protein
111	 62.93	0	140531..141253	+	240	116249877	-	RL0111	-	putative transmembrane protein
112	 61.34	0	141322..142110	+	262	116249878	-	RL0112	-	putative transmembrane protein
113	 55.07	-1	142264..142677	+	137	116249879	-	RL0113	-	hypothetical protein
114	 62.89	0	142765..143400	+	211	116249880	-	RL0114	-	putative transmembrane protein
115	 61.70	0	143477..143899	-	140	116249881	irr	RL0115	-	iron response regulator
116	 59.30	0	144197..144712	+	171	116249882	fabA	RL0116	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
117	 61.83	0	144791..145990	+	399	116249883	fabB	RL0117	-	3-oxoacyl-(acyl carrier protein) synthase I
118	 62.21	0	145998..146804	+	268	116249884	fabI	RL0118	-	enoyl-(acyl carrier protein) reductase
119	 64.70	0	146893..147909	-	338	116249885	-	RL0119	-	putative ribosomal RNA small subunit methyltransferase
120	 62.27	0	147985..150123	-	712	116249886	pnp	RL0120	-	polynucleotide phosphorylase/polyadenylase
121	 54.81	-2	150472..150741	-	89	116249887	rpsO	RL0121	-	30S ribosomal protein S15
122	 59.32	0	150895..151833	-	312	116249888	-	RL0122	-	putative oxidoreductase
123	 63.02	0	151863..152795	-	310	116249889	truB	RL0123	-	tRNA pseudouridine synthase B
124	 61.73	0	152809..153213	-	134	116249890	rbfA	RL0124	-	ribosome-binding factor A
125	 65.21	+1	153364..156117	-	917	116249891	infB	RL0125	-	translation initiation factor IF-2
126	 62.19	0	156219..156911	-	230	116249892	-	RL0126	-	hypothetical protein
127	 61.80	0	156908..158509	-	533	116249893	nusA	RL0127	-	transcription elongation factor NusA
128	 57.92	-1	158569..159174	-	201	116249894	-	RL0128	-	hypothetical protein
129	 64.23	0	159373..161052	+	559	116249895	-	RL0129	-	putative transmembrane transport protein
130	 62.32	0	161049..161531	+	160	116249896	-	RL0130	-	putative transcriptional regulator/acetyltransferase
131	 61.18	0	161538..162812	-	424	116249897	-	RL0131	-	hypothetical protein
132	 64.03	0	162809..163414	-	201	116249898	recR	RL0131A	-	recombination protein RecR
133	 61.73	0	163433..164101	+	222	116249899	-	RL0132	-	hypothetical protein
134	 62.65	0	164124..164447	-	107	116249900	-	RL0133	-	hypothetical protein
135	 65.12	+1	164470..166347	-	625	116249901	dnaX	RL0134	-	DNA polymerase III subunits gamma and tau
136	 57.06	-1	166459..166989	+	176	116249902	-	RL0135	-	hypothetical protein
137	 62.92	0	166986..167945	+	319	116249903	-	RL0136	-	putative MutT/nudix family protein
138	 65.23	+1	167950..168645	+	231	116249904	-	RL0137	-	putative transcriptional regulator
139	 61.79	0	169172..169540	+	122	116249905	-	RL0138	-	putative glyoxalase/dioxygenase
140	 60.94	0	169654..170508	-	284	116249906	-	RL0139	-	prephenate dehydratase
141	 63.10	0	170519..171274	-	251	116249907	kdsB	RL0140	-	3-deoxy-manno-octulosonate cytidylyltransferase
142	 60.11	0	171429..171992	+	187	116249908	cycM	RL0141	-	putative cytochrome c
143	 64.87	+1	172062..173009	-	315	116249909	-	RL0142	-	putative transmembrane permease protein
144	 61.53	0	173497..174489	+	330	116249910	-	RL0143	-	Pfk family kinase
145	 64.81	+1	174482..175021	-	179	116249911	-	RL0144	-	hypothetical protein
146	 64.07	0	175207..176208	+	333	116249912	gyaR	RL0145	-	putative glyoxylate reductase
147	 62.78	0	176222..176710	-	162	116249913	-	RL0146	-	putative acetyltransferase
148	 64.85	+1	176707..177531	-	274	116249914	-	RL0147	-	molybdopterin biosynthesis protein MoeB
149	 65.78	+1	177528..178652	-	374	116249915	recF	RL0148	-	recombination protein F
150	 58.74	0	179034..179399	+	121	116249916	-	RL0149	-	putative HTH-type transcriptional regulator
151	 59.20	0	179558..179758	-	66	116249917	-	RL0150	-	hypothetical protein
152	 62.94	0	180070..181197	-	375	116249918	dnaJ	RL0151	-	putative chaperone protein
153	 61.09	0	181283..183199	-	638	116249919	dnaK	RL0152	-	molecular chaperone DnaK
154	 64.61	0	183536..185872	-	778	116249920	-	RL0153	-	putative penicillin-binding transpeptidase/transglycosylase protein
155	 57.21	-1	186083..186304	-	73	116249921	-	RL0154	-	hypothetical protein
156	 61.75	0	186908..187558	-	216	116249922	-	RL0155	-	hypothetical protein
157	 50.78	-2	187564..187821	-	85	116249923	-	RL0156	-	hypothetical protein
158	 62.28	0	187987..189444	-	485	116249924	-	RL0157	-	hypothetical protein
159	 62.35	0	189588..191972	+	794	116249925	-	RL0158	-	GGDEF domain/EAL domain-containing protein
160	 64.03	0	192083..192499	-	138	116249926	-	RL0159	-	MarR family transcriptional regulator protein
161	 62.57	0	192994..196044	+	1016	116249927	polA	RL0160	-	DNA polymerase I
162	 63.55	0	196319..198664	+	781	116249928	-	RL0161	-	putative cell division DNA translocase protein
163	 59.72	0	198700..199203	-	167	116249929	-	RL0162	-	hypothetical protein
164	 65.33	+1	199223..199819	-	198	116249930	phnN	RL0163	-	putative ATP-binding phosphonate metabolism protein
165	 63.94	0	199816..200988	-	390	116249931	phnM	RL0164	-	putative phosphonate metabolism protein
166	 61.78	0	200969..201664	-	231	116249932	-	RL0165	-	hypothetical protein
167	 60.98	0	201786..203138	-	450	116249933	phoT	RL0166	-	putative permease component of phosphate uptake ABC transporter protein
168	 60.65	0	203138..204118	-	326	116249934	phoE	RL0167	-	putative permease component of phosphate uptake ABC transporter
169	 61.47	0	204187..205110	-	307	116249935	phoD	RL0168	-	putative solute-binding component of phosphate uptake ABC transporter
170	 60.02	0	205369..206436	-	355	116249936	-	RL0169	-	putative transposase for insertion element family protein
171	 63.00	0	206639..207484	-	281	116249937	phoC	RL0170	-	putative ATP-binding component of phosphate uptake ABC transporter
172	 63.27	0	207600..208217	-	205	116249938	-	RL0171	-	putative acetyltransferase
173	 64.27	0	208214..208921	-	235	116249939	-	RL0172	-	putative ATP-binding component of phosphate uptake ABC transporter
174	 65.25	+1	208948..209724	-	258	116249940	phnK	RL0173	-	phosphonates transport ATP-binding protein
175	 61.99	0	209721..210596	-	291	116249941	phnJ	RL0174	-	putative phosphonate metabolism protein
176	 65.22	+1	210593..211699	-	368	116249942	phnI	RL0175	-	putative phosphonate metabolism protein
177	 66.17	+1	211704..212312	-	202	116249943	phnH	RL0176	-	carbon-phosphorus lyase complex subunit
178	 67.51	+1	212312..212788	-	158	116249944	phnG	RL0177	-	putative phosphonate utilisation protein
179	 63.69	0	212906..213643	+	245	116249945	-	RL0178	-	GntR family transcriptional regulator
180	 63.05	0	213683..214318	-	211	116249946	gpmA	RL0179	-	phosphoglyceromutase
181	 64.85	+1	214340..215164	-	274	116249947	dapB	RL0180	-	dihydrodipicolinate reductase
182	 63.53	0	215180..216967	-	595	116249948	-	RL0181	-	putative transmembrane component of ABC transporter
61.51	MEAN

3.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.