IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.51   STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1191	 63.77	0	1260269..1260613	-	114	116250958	-	RL1190	-	putative HTH-type transcriptional regulator
1192	 56.88	-1	1260630..1261058	-	142	116250959	-	RL1191	-	putative transmembrane protein
1193	 62.90	0	1261418..1261762	-	114	116250960	-	RL1192	-	HTH family transcriptional regulator
1194	 63.72	0	1261869..1262615	+	248	116250961	-	RL1193	-	putative short-chain reductase
1195	 61.44	0	1262712..1263266	-	184	116250962	-	RL1194	-	putative transmembrane protein
1196	 62.91	0	1263584..1266271	-	895	116250963	-	RL1196	-	putative adhesin precursor (autotransporter)
1197	 59.31	0	1266575..1267294	-	239	116250964	-	RL1197	-	putative oxidoreductase/dehydrogenase
1198	 59.21	0	1267418..1267846	-	142	116250965	-	RL1198	-	hypothetical protein
1199	 60.83	0	1267939..1269051	-	370	116250966	-	RL1199	-	hypothetical protein
1200	 61.08	0	1269017..1270180	+	387	116250967	-	RL1200	-	putative transmembrane protein
1201	 61.78	0	1270181..1273087	-	968	116250968	-	RL1201	-	putative transcriptional regulator
1202	 64.91	+1	1273376..1274341	-	321	116250969	-	RL1202	-	LysR family transcriptional regulator
1203	 65.56	+1	1274411..1275403	+	330	116250970	-	RL1203	-	metallo-beta-lactamase family methyl parathion hydrolase
1204	 64.76	0	1275918..1276808	-	296	116250971	-	RL1204	-	LysR family transcriptional regulator
1205	 63.33	0	1276913..1277782	+	289	116250972	-	RL1205	-	hypothetical protein
1206	 62.66	0	1277817..1278290	+	157	116250973	-	RL1206	-	hypothetical protein
1207	 57.08	-1	1278506..1279444	-	312	116250974	-	RL1207	-	hypothetical protein
1208	 62.91	0	1279854..1280546	-	230	116250975	-	RL1208	-	putative chaperone protein
1209	 63.13	0	1280668..1281600	+	310	116250976	-	RL1209	-	LysR family transcriptional regulator
1210	 57.60	-1	1281597..1282037	+	146	116250977	-	RL1210	-	hypothetical protein
1211	 61.07	0	1282092..1282466	-	124	116250978	-	RL1211	-	hypothetical protein
1212	 58.29	0	1282574..1283194	-	206	116250979	-	RL1212	-	putative glutathione S-transferase
1213	 58.44	0	1283187..1283672	-	161	116250980	-	RL1213	-	hypothetical protein
1214	 57.66	-1	1283665..1283997	-	110	116250981	-	RL1214	-	HTH family transcriptional regulator
1215	 64.17	0	1284137..1284457	-	106	116250982	-	RL1215	-	putative transmembrane protein
1216	 61.68	0	1284459..1284839	-	126	116250983	-	RL1216	-	hypothetical protein
1217	 62.07	0	1284958..1285566	+	202	116250984	-	RL1217	-	TetR family transcriptional regulator
1218	 65.03	+1	1285736..1286224	-	162	116250985	-	RL1218	-	hypothetical protein
1219	 65.27	+1	1286199..1286555	-	118	116250986	-	RL1219	-	putative transcriptional regulator
1220	 62.46	0	1286704..1287345	+	213	116250987	-	RL1220	-	hypothetical protein
1221	 64.12	0	1287412..1287765	+	117	116250988	-	RL1221	-	HTH family transcriptional regulator
1222	 62.63	0	1287755..1288249	+	164	116250989	-	RL1222	-	hypothetical protein
1223	 65.03	+1	1288315..1289049	-	244	116250990	-	RL1223	-	hypothetical protein
1224	 61.23	0	1289166..1291097	-	643	116250991	cya1	RL1224	-	putative adenylate/guanylate cyclase
1225	 58.12	-1	1291440..1291790	-	116	116250992	-	RL1225	-	hypothetical protein
1226	 66.32	+1	1291890..1292468	-	192	116250993	-	RL1226	-	putative transmembrane protein
1227	 64.13	0	1292663..1293292	-	209	116250994	-	RL1227	-	hypothetical protein
1228	 63.28	0	1293364..1293954	-	196	116250995	-	RL1228	-	TetR family transcriptional regulator
1229	 61.19	0	1294195..1294869	+	224	116250996	-	RL1229	-	hypothetical protein
1230	 55.14	-1	1294944..1295264	+	106	116250997	-	RL1230	-	hypothetical protein
1231	 63.89	0	1295526..1296353	-	275	116250998	-	RL1231	-	short chain dehydrogenase
1232	 61.34	0	1296433..1297371	+	312	116250999	-	RL1232	-	AraC family transcriptional regulator
1233	 66.17	+1	1297380..1297982	-	200	116251000	-	RL1233	-	TetR family transcriptional regulator
1234	 62.00	0	1298034..1298483	+	149	116251001	-	RL1234	-	putative glyxoylase
1235	 62.50	0	1298480..1298791	+	103	116251002	-	RL1235	-	hypothetical protein
1236	 57.66	-1	1299551..1301104	+	517	116251003	-	RL1236	-	putative arylsulfatase
1237	 60.63	0	1301174..1303558	+	794	116251004	-	RL1237	-	putative arylsulfatase
1238	 57.08	-1	1303712..1305223	+	503	116251005	-	RL1238	-	putative arylsulfatase
1239	 57.44	-1	1306029..1306505	+	158	116251006	-	RL1239	-	hypothetical protein
1240	 54.65	-2	1306613..1307494	-	293	116251007	-	RL1240	-	putative lipase
1241	 65.40	+1	1308035..1308271	+	78	116251008	-	RL1241	-	putative transmembrane protein
1242	 60.34	0	1308294..1308767	+	157	116251009	-	RL1242	-	hypothetical protein
1243	 57.00	-1	1308733..1309560	+	275	116251010	-	RL1243	-	hypothetical protein
1244	 61.77	0	1309577..1310005	+	142	116251011	-	RL1244	-	putative transmembrane protein
1245	 54.85	-2	1311888..1312124	-	78	116251012	-	RL1245	-	hypothetical protein
1246	 53.47	-2	1312332..1312778	-	148	116251013	-	RL1246	-	hypothetical protein
1247	 58.68	0	1313060..1313422	-	120	116251014	-	RL1247	-	hypothetical protein
1248	 57.20	-1	1313493..1313756	-	87	116251015	-	RL1248	-	hypothetical protein
1249	 57.00	-1	1313896..1314195	-	99	116251016	-	RL1249	-	hypothetical protein
1250	 59.01	0	1314500..1314904	+	134	116251017	-	RL1250	-	hypothetical protein
1251	 65.74	+1	1315488..1316993	-	501	116251018	degP	RL1251	-	putative serine protease
1252	 64.53	0	1317599..1318582	+	327	116251019	-	RL1252	-	GntR family transcriptional regulator
1253	 60.00	0	1318743..1319642	-	299	116251020	-	RL1253	-	LysR family transcriptional regulator
1254	 63.67	0	1319784..1320383	+	199	116251021	-	RL1254	-	hypothetical protein
1255	 61.78	0	1320481..1321401	+	306	116251022	-	RL1255	-	LysR family transcriptional regulator
1256	 57.44	-1	1321402..1322355	-	317	116251023	-	RL1256	-	putative nitrogen metabolite repression regulator
1257	 60.62	0	1322652..1323626	-	324	116251024	qor	RL1257	-	putative quinone oxidoreductase
1258	 61.28	0	1323672..1324562	+	296	116251025	-	RL1258	-	LysR family transcriptional regulator
1259	 57.63	-1	1324622..1325263	-	213	116251026	-	RL1259	-	hypothetical protein
1260	 65.60	+1	1325564..1327060	-	498	116251027	cysN	RL1260	-	putative sulfate adenylyltransferase
1261	 62.26	0	1327062..1328015	-	317	116251028	cysD	RL1261	-	sulfate adenylyltransferase subunit 2
1262	 64.69	0	1328143..1328901	-	252	116251029	-	RL1262	-	putative phosphoadenosine phosphosulfate reductase
1263	 61.74	0	1329322..1329768	+	148	116251030	-	RL1263	-	Rrf2 family transcriptional regulator
1264	 61.15	0	1329815..1330576	-	253	116251031	-	RL1264	-	putative alcohol dehydrogenase
1265	 58.14	-1	1330679..1331593	+	304	116251032	-	RL1265	-	LysR family transcriptional regulator
1266	 60.49	0	1331605..1332090	+	161	116251033	-	RL1266	-	hypothetical protein
1267	 64.35	0	1332110..1332583	+	157	116251034	-	RL1267	-	putative transmembrane protein
1268	 54.61	-2	1332701..1332982	+	93	116251035	-	RL1268	-	hypothetical protein
1269	 53.33	-2	1332979..1333278	+	99	116251036	-	RL1269	-	hypothetical protein
1270	 63.39	0	1333279..1334928	-	549	116251037	betA	RL1270	-	choline dehydrogenase
1271	 65.16	+1	1335148..1336611	-	487	116251038	betB	RL1271	-	betaine aldehyde dehydrogenase
1272	 63.13	0	1336608..1337258	-	216	116251039	-	RL1272	-	transcriptional regulator BetI
1273	 60.29	0	1337399..1337947	+	182	116251040	-	RL1273	-	putative transmembrane protein
1274	 65.84	+1	1338166..1338408	+	80	116251041	-	RL1274	-	hypothetical protein
1275	 60.65	0	1338522..1340399	+	625	116251042	-	RL1275	-	putative GGDEF/EAL sensory box protein
1276	 64.16	0	1340480..1341478	+	332	116251043	-	RL1276	-	putative quinone oxidoreductase
1277	 66.01	+1	1341652..1343019	-	455	116251044	-	RL1277	-	putative transmembrane transporter protein
1278	 68.09	+2	1343185..1343817	+	210	116251045	-	RL1278	-	hypothetical protein
1279	 63.12	0	1343843..1345054	-	403	116251046	-	RL1279	-	putative transmembrane MFS efflux transporter
1280	 65.87	+1	1345415..1346422	+	335	116251047	ansA	RL1280	-	putative L-asparaginase II
1281	 65.45	+1	1346549..1347286	+	245	116251048	-	RL1281	-	putative transmembrane protein
1282	 65.34	+1	1347261..1348016	-	251	116251049	-	RL1282	-	DeoR family transcriptional regulator
1283	 66.95	+1	1348159..1348515	+	118	116251050	-	RL1283	-	hypothetical protein
1284	 62.96	0	1348877..1349497	+	206	116251051	gstB	RL1284	-	putative glutathione S-transferase
1285	 61.75	0	1349482..1349847	-	121	116251052	-	RL1285	-	hypothetical protein
1286	 62.19	0	1349886..1350086	-	66	116251053	-	RL1286	-	hypothetical protein
1287	 65.66	+1	1350262..1351158	+	298	116251054	-	RL1287	-	LysR family transcriptional regulator
1288	 62.16	0	1351162..1351827	-	221	116251055	gst2b	RL1288	-	putative glutathione S-transferase
1289	 64.74	0	1351929..1353278	-	449	116251056	-	RL1289	-	hypothetical protein
1290	 65.23	+1	1353552..1355849	+	765	116251057	-	RL1290	-	sensory box GGDEF/EAL domain-containing protein
61.51	MEAN

3.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.