IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.51   STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1139	 61.97	0	1213204..1214502	-	432	116250906	-	RL1134	-	hypothetical protein
1140	 60.91	0	1214583..1215242	+	219	116250907	-	RL1135	-	putative transmembrane copper resistance protein
1141	 58.63	0	1215281..1215790	+	169	116250908	-	RL1136	-	hypothetical protein
1142	 59.89	0	1215808..1217268	+	486	116250909	-	RL1137	-	hypothetical protein
1143	 60.98	0	1217320..1217847	+	175	116250910	-	RL1138	-	putative ECF sigma factor
1144	 63.15	0	1217844..1218611	+	255	116250911	-	RL1139	-	putative transmembrane protein
1145	 54.99	-2	1219214..1219744	-	176	116250912	-	RL1141	-	hypothetical protein
1146	 64.88	+1	1219894..1221462	-	522	116250913	-	RL1142	-	putative adenylate cyclase
1147	 59.02	0	1221893..1222402	+	169	116250914	-	RL1144	-	hypothetical protein
1148	 55.97	-1	1222888..1223943	+	351	116250915	-	RL1145	-	putative conjugated bile salt hydrolase
1149	 61.78	0	1224087..1224782	-	231	116250916	-	RL1146	-	hypothetical protein
1150	 54.92	-2	1224769..1225185	-	138	116250917	-	RL1147	-	hypothetical protein
1151	 60.27	0	1225427..1225723	+	98	116250918	-	RL1148	-	hypothetical protein
1152	 59.93	0	1226196..1228616	+	806	116250919	-	RL1149	-	putative exported arylsulfatase
1153	 61.80	0	1228626..1229303	+	225	116250920	-	RL1150	-	hypothetical protein
1154	 57.11	-1	1229358..1230854	+	498	116250921	-	RL1151	-	hypothetical protein
1155	 60.00	0	1230985..1231344	+	119	116250922	-	RL1152	-	putative transmembrane protein
1156	 61.19	0	1231646..1232083	-	145	116250923	-	RL1154	-	hypothetical protein
1157	 65.80	+1	1232414..1233217	+	267	116250924	-	RL1155	-	putative glycosyl transferase
1158	 63.88	0	1233183..1234580	-	465	116250925	-	RL1156	-	putative two component sensor histidine kinase transcriptional regulator
1159	 64.35	0	1234567..1235256	-	229	116250926	-	RL1157	-	putative two-component response regulator transcriptional regulatory protein
1160	 61.87	0	1235723..1236118	+	131	116250927	-	RL1159	-	hypothetical protein
1161	 61.67	0	1236170..1236769	-	199	116250928	-	RL1160	-	putative cytochrome c protein
1162	 63.01	0	1236898..1237689	-	263	116250929	-	RL1161	-	hypothetical protein
1163	 55.46	-1	1237944..1238282	-	112	116250930	-	RL1162	-	putative response regulator
1164	 60.22	0	1238348..1239463	-	371	116250931	-	RL1163	-	putative two-component sensor histidine kinase transcriptional regulatory protein
1165	 68.34	+2	1239888..1240484	-	198	116250932	-	RL1164	-	hypothetical protein
1166	 57.23	-1	1240502..1240819	-	105	116250933	-	RL1165	-	hypothetical protein
1167	 58.46	0	1241165..1241554	-	129	116250934	-	RL1166	-	putative ribonuclease-L-PSP family protein
1168	 62.75	0	1241692..1242303	+	203	116250935	-	RL1167	-	TetR family transcriptional regulator
1169	 58.56	0	1242406..1242738	+	110	116250936	-	RL1168	-	HTH family transcriptional regulator
1170	 59.44	0	1242735..1243094	+	119	116250937	-	RL1169	-	hypothetical protein
1171	 56.37	-1	1243141..1243752	+	203	116250938	clpP	RL1170	-	ATP-dependent Clp protease proteolytic subunit
1172	 60.27	0	1244138..1244356	+	72	116250939	-	RL1171	-	hypothetical protein
1173	 57.60	-1	1244403..1244777	+	124	116250940	-	RL1172	-	putative transmembrane protein
1174	 60.61	0	1244937..1245332	-	131	116250941	-	RL1173	-	putative transmembrane protein
1175	 57.83	-1	1245461..1245811	-	116	116250942	-	RL1174	-	hypothetical protein
1176	 64.15	0	1246261..1247610	+	449	116250943	-	RL1175	-	putative transmembrane efflux protein
1177	 59.72	0	1247675..1247962	+	95	116250944	-	RL1176	-	hypothetical protein
1178	 65.30	+1	1247967..1248404	+	145	116250945	-	RL1177	-	putative transmembrane protein
1179	 63.52	0	1248404..1249135	+	243	116250946	-	RL1178	-	putative transmembrane efflux protein
1180	 63.12	0	1249132..1249695	+	187	116250947	-	RL1179	-	hypothetical protein
1181	 62.78	0	1249965..1251020	+	351	116250948	-	RL1180	-	hypothetical protein
1182	 57.48	-1	1251180..1251821	+	213	116250949	-	RL1181	-	hypothetical protein
1183	 57.41	-1	1251932..1252255	-	107	116250950	-	RL1182	-	hypothetical protein
1184	 65.93	+1	1252528..1253343	+	271	116250951	aacC	RL1183	-	putative aminoglycoside N(3')-acetyltransferase III
1185	 67.37	+1	1253556..1254125	-	189	116250952	-	RL1184	-	hypothetical protein
1186	 65.39	+1	1254221..1254925	-	234	116250953	-	RL1185	-	putative short-chain dehydrogenase/reductase
1187	 63.29	0	1255043..1255930	+	295	116250954	-	RL1186	-	LysR family transcriptional regulator
1188	 60.98	0	1256226..1257932	+	568	116250955	cya3	RL1187	-	putative adenylate cyclase 3
1189	 62.40	0	1258537..1259520	-	327	116250956	-	RL1188	-	putative kinase
1190	 46.90	-2	1259691..1260110	+	139	116250957	-	RL1189	-	hypothetical protein
1191	 63.77	0	1260269..1260613	-	114	116250958	-	RL1190	-	putative HTH-type transcriptional regulator
1192	 56.88	-1	1260630..1261058	-	142	116250959	-	RL1191	-	putative transmembrane protein
1193	 62.90	0	1261418..1261762	-	114	116250960	-	RL1192	-	HTH family transcriptional regulator
1194	 63.72	0	1261869..1262615	+	248	116250961	-	RL1193	-	putative short-chain reductase
1195	 61.44	0	1262712..1263266	-	184	116250962	-	RL1194	-	putative transmembrane protein
1196	 62.91	0	1263584..1266271	-	895	116250963	-	RL1196	-	putative adhesin precursor (autotransporter)
1197	 59.31	0	1266575..1267294	-	239	116250964	-	RL1197	-	putative oxidoreductase/dehydrogenase
1198	 59.21	0	1267418..1267846	-	142	116250965	-	RL1198	-	hypothetical protein
1199	 60.83	0	1267939..1269051	-	370	116250966	-	RL1199	-	hypothetical protein
1200	 61.08	0	1269017..1270180	+	387	116250967	-	RL1200	-	putative transmembrane protein
1201	 61.78	0	1270181..1273087	-	968	116250968	-	RL1201	-	putative transcriptional regulator
1202	 64.91	+1	1273376..1274341	-	321	116250969	-	RL1202	-	LysR family transcriptional regulator
1203	 65.56	+1	1274411..1275403	+	330	116250970	-	RL1203	-	metallo-beta-lactamase family methyl parathion hydrolase
1204	 64.76	0	1275918..1276808	-	296	116250971	-	RL1204	-	LysR family transcriptional regulator
1205	 63.33	0	1276913..1277782	+	289	116250972	-	RL1205	-	hypothetical protein
1206	 62.66	0	1277817..1278290	+	157	116250973	-	RL1206	-	hypothetical protein
1207	 57.08	-1	1278506..1279444	-	312	116250974	-	RL1207	-	hypothetical protein
1208	 62.91	0	1279854..1280546	-	230	116250975	-	RL1208	-	putative chaperone protein
1209	 63.13	0	1280668..1281600	+	310	116250976	-	RL1209	-	LysR family transcriptional regulator
1210	 57.60	-1	1281597..1282037	+	146	116250977	-	RL1210	-	hypothetical protein
1211	 61.07	0	1282092..1282466	-	124	116250978	-	RL1211	-	hypothetical protein
1212	 58.29	0	1282574..1283194	-	206	116250979	-	RL1212	-	putative glutathione S-transferase
1213	 58.44	0	1283187..1283672	-	161	116250980	-	RL1213	-	hypothetical protein
1214	 57.66	-1	1283665..1283997	-	110	116250981	-	RL1214	-	HTH family transcriptional regulator
1215	 64.17	0	1284137..1284457	-	106	116250982	-	RL1215	-	putative transmembrane protein
1216	 61.68	0	1284459..1284839	-	126	116250983	-	RL1216	-	hypothetical protein
1217	 62.07	0	1284958..1285566	+	202	116250984	-	RL1217	-	TetR family transcriptional regulator
1218	 65.03	+1	1285736..1286224	-	162	116250985	-	RL1218	-	hypothetical protein
1219	 65.27	+1	1286199..1286555	-	118	116250986	-	RL1219	-	putative transcriptional regulator
1220	 62.46	0	1286704..1287345	+	213	116250987	-	RL1220	-	hypothetical protein
1221	 64.12	0	1287412..1287765	+	117	116250988	-	RL1221	-	HTH family transcriptional regulator
1222	 62.63	0	1287755..1288249	+	164	116250989	-	RL1222	-	hypothetical protein
1223	 65.03	+1	1288315..1289049	-	244	116250990	-	RL1223	-	hypothetical protein
1224	 61.23	0	1289166..1291097	-	643	116250991	cya1	RL1224	-	putative adenylate/guanylate cyclase
1225	 58.12	-1	1291440..1291790	-	116	116250992	-	RL1225	-	hypothetical protein
1226	 66.32	+1	1291890..1292468	-	192	116250993	-	RL1226	-	putative transmembrane protein
1227	 64.13	0	1292663..1293292	-	209	116250994	-	RL1227	-	hypothetical protein
1228	 63.28	0	1293364..1293954	-	196	116250995	-	RL1228	-	TetR family transcriptional regulator
1229	 61.19	0	1294195..1294869	+	224	116250996	-	RL1229	-	hypothetical protein
1230	 55.14	-1	1294944..1295264	+	106	116250997	-	RL1230	-	hypothetical protein
1231	 63.89	0	1295526..1296353	-	275	116250998	-	RL1231	-	short chain dehydrogenase
1232	 61.34	0	1296433..1297371	+	312	116250999	-	RL1232	-	AraC family transcriptional regulator
1233	 66.17	+1	1297380..1297982	-	200	116251000	-	RL1233	-	TetR family transcriptional regulator
1234	 62.00	0	1298034..1298483	+	149	116251001	-	RL1234	-	putative glyxoylase
1235	 62.50	0	1298480..1298791	+	103	116251002	-	RL1235	-	hypothetical protein
1236	 57.66	-1	1299551..1301104	+	517	116251003	-	RL1236	-	putative arylsulfatase
1237	 60.63	0	1301174..1303558	+	794	116251004	-	RL1237	-	putative arylsulfatase
1238	 57.08	-1	1303712..1305223	+	503	116251005	-	RL1238	-	putative arylsulfatase
61.51	MEAN

3.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.