IslandPathversion 1.0

IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.51 STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1074	 59.21	0	1149086..1149970	-	294	116250841	-	RL1068	-	hypothetical protein
1075	 60.20	0	1150046..1153693	+	1215	116250842	-	RL1069	-	putative autotransporter
1076	 59.95	0	1153735..1154106	-	123	116250843	-	RL1070	-	hypothetical protein
1077	 65.40	+1	1154354..1154590	-	78	116250844	-	RL1071	-	hypothetical protein
1078	 66.96	+1	1154672..1155358	-	228	116250845	-	RL1072	-	putative transcriptional regulator
1079	 58.79	0	1155431..1155760	+	109	116250846	-	RL1073	-	hypothetical protein
1080	 62.68	0	1155757..1156107	+	116	116250847	-	RL1074	-	hypothetical protein
1081	 62.47	0	1156286..1157428	+	380	116250848	-	RL1075	-	putative modification methylase
1082	 60.66	0	1157595..1157960	-	121	116250849	-	RL1076	-	hypothetical protein
1083	 59.19	0	1157964..1158578	-	204	116250850	-	RL1077	-	hypothetical protein
1084	 63.41	0	1158581..1159684	-	367	116250851	mutY	RL1078	-	putative A/G-specific adenine glycosylase
1085	 65.06	+1	1159793..1160290	+	165	116250852	-	RL1079	-	hypothetical protein
1086	 62.63	0	1160408..1160605	+	65	116250853	-	RL1080	-	hypothetical protein
1087	 59.56	0	1161283..1161507	+	74	116250854	-	RL1082	-	putative plasmid stabilisation-like protein
1088	 58.91	0	1161842..1162486	+	214	116250855	-	RL1083	-	putative disulfide bond formation protein D
1089	 67.68	+1	1162583..1166044	+	1153	116250856	smc	RL1084	-	putative structural maintenance of chromosomes protein
1090	 53.20	-2	1166451..1166747	-	98	116250857	-	RL1085	-	hypothetical protein
1091	 65.23	+1	1166874..1169582	+	902	116250858	ppdK	RL1086	-	pyruvate phosphate dikinase
1092	 65.95	+1	1169620..1169898	-	92	116250859	-	RL1087	-	hypothetical protein
1093	 60.46	0	1170164..1170598	-	144	116250860	-	RL1088	-	hypothetical protein
1094	 65.65	+1	1170747..1171139	-	130	116250861	-	RL1089	-	hypothetical protein
1095	 67.65	+1	1171479..1172390	+	303	116250862	-	RL1090	-	putative transmembrane protein
1096	 66.72	+1	1173026..1174747	-	573	116250863	-	RL1091	-	hypothetical protein
1097	 61.40	0	1174744..1175199	-	151	116250864	-	RL1092	-	hypothetical protein
1098	 67.00	+1	1175233..1176144	-	303	116250865	-	RL1093	-	putative beta-lactamase family protein
1099	 52.90	-2	1176540..1177178	+	212	116250866	-	RL1094	-	hypothetical protein
1100	 50.87	-2	1177147..1177608	+	153	116250867	-	RL1095	-	hypothetical protein
1101	 57.22	-1	1177684..1178043	-	119	116250868	-	RL1096	-	hypothetical protein
1102	 55.87	-1	1178040..1179410	-	456	116250869	hsdS	RL1097	-	putative type I restriction enzyme specificity subunit
1103	 61.52	0	1179407..1179736	-	109	116250870	hsdM2	RL1098	-	putative type I restriction enzyme modification methylase subunit
1104	 60.60	0	1179706..1180941	-	411	116250871	hsdM1	RL1099	-	putative type I restriction enzyme modification methylase subunit
1105	 60.19	0	1181007..1184417	-	1136	116250872	hsdR	RL1100	-	type I restriction enzyme EcoKI subunit R
1106	 64.25	0	1184654..1184860	+	68	116250873	-	RL1101	-	hypothetical protein
1107	 55.52	-1	1184909..1185868	+	319	116250874	-	RL1102	-	hypothetical protein
1108	 55.96	-1	1185861..1186691	+	276	116250875	-	RL1103	-	hypothetical protein
1109	 65.13	+1	1186743..1187522	-	259	116250876	-	RL1104	-	putative ketoreductase
1110	 67.00	+1	1187909..1188514	-	201	116250877	-	RL1105	-	putative transcriptional regulator
1111	 67.25	+1	1188627..1189313	+	228	116250878	-	RL1106	-	PspA family regulator
1112	 55.32	-1	1189363..1189644	+	93	116250879	-	RL1107	-	putative transmembrane protein
1113	 63.78	0	1189737..1193132	+	1131	116250880	-	RL1108	-	acylglycerophosphoethanolamine acyltransferase
1114	 64.46	0	1193444..1193851	-	135	116250881	-	RL1109	-	hypothetical protein
1115	 61.78	0	1194321..1194770	-	149	116250882	-	RL1110	-	putative plasmid-stability like protein
1116	 57.46	-1	1194767..1195081	-	104	116250883	-	RL1111	-	hypothetical protein
1117	 54.68	-2	1195117..1195725	-	202	116250884	-	RL1112	-	putative transmembrane protein
1118	 67.74	+1	1195857..1196879	-	340	116250885	-	RL1113	-	putative transcriptional regulator
1119	 66.24	+1	1197748..1197981	-	77	116250886	-	RL1114	-	hypothetical protein
1120	 64.77	+1	1197993..1198256	-	87	116250887	-	RL1115	-	hypothetical protein
1121	 61.57	0	1199102..1199749	-	215	116250888	-	RL1116	-	hypothetical protein
1122	 61.62	0	1199817..1200113	+	98	116250889	-	RL1117	-	hypothetical protein
1123	 69.86	+2	1200110..1200328	+	72	116250890	-	RL1118	-	hypothetical protein
1124	 65.14	+1	1200458..1200850	+	130	116250891	-	RL1119	-	hypothetical protein
1125	 60.20	0	1200847..1201248	+	133	116250892	-	RL1120	-	hypothetical protein
1126	 64.14	0	1201214..1201609	+	131	116250893	-	RL1121	-	hypothetical protein
1127	 63.75	0	1201620..1202099	+	159	116250894	-	RL1122	-	GerE/LuxR family transcriptional regulator
1128	 65.32	+1	1202113..1202706	+	197	116250895	-	RL1123	-	hypothetical protein
1129	 55.96	-1	1202930..1203256	+	108	116250896	-	RL1124	-	hypothetical protein
1130	 59.39	0	1203757..1205295	+	512	116250897	-	RL1125	-	putative carboxylesterase
1131	 60.17	0	1205531..1206976	-	481	116250898	-	RL1126	-	hypothetical protein
1132	 63.52	0	1207465..1209369	+	634	116250899	-	RL1127	-	putative adenylate cyclase
1133	 60.77	0	1209389..1209829	+	146	116250900	-	RL1128	-	hypothetical protein
1134	 59.56	0	1209872..1210237	+	121	116250901	-	RL1129	-	hypothetical protein
1135	 64.90	+1	1210449..1210844	-	131	116250902	-	RL1130	-	hypothetical protein
1136	 65.13	+1	1211252..1212034	-	260	116250903	-	RL1131	-	putative transmembrane protein
1137	 63.75	0	1212459..1212869	-	136	116250904	-	RL1132	-	putative transmembrane protein
1138	 63.22	0	1212866..1213213	-	115	116250905	-	RL1133	-	HTH family transcriptional regulator
1139	 61.97	0	1213204..1214502	-	432	116250906	-	RL1134	-	hypothetical protein
1140	 60.91	0	1214583..1215242	+	219	116250907	-	RL1135	-	putative transmembrane copper resistance protein
1141	 58.63	0	1215281..1215790	+	169	116250908	-	RL1136	-	hypothetical protein
1142	 59.89	0	1215808..1217268	+	486	116250909	-	RL1137	-	hypothetical protein
1143	 60.98	0	1217320..1217847	+	175	116250910	-	RL1138	-	putative ECF sigma factor
1144	 63.15	0	1217844..1218611	+	255	116250911	-	RL1139	-	putative transmembrane protein
1145	 54.99	-2	1219214..1219744	-	176	116250912	-	RL1141	-	hypothetical protein
1146	 64.88	+1	1219894..1221462	-	522	116250913	-	RL1142	-	putative adenylate cyclase
1147	 59.02	0	1221893..1222402	+	169	116250914	-	RL1144	-	hypothetical protein
1148	 55.97	-1	1222888..1223943	+	351	116250915	-	RL1145	-	putative conjugated bile salt hydrolase
1149	 61.78	0	1224087..1224782	-	231	116250916	-	RL1146	-	hypothetical protein
1150	 54.92	-2	1224769..1225185	-	138	116250917	-	RL1147	-	hypothetical protein
1151	 60.27	0	1225427..1225723	+	98	116250918	-	RL1148	-	hypothetical protein
1152	 59.93	0	1226196..1228616	+	806	116250919	-	RL1149	-	putative exported arylsulfatase
1153	 61.80	0	1228626..1229303	+	225	116250920	-	RL1150	-	hypothetical protein
1154	 57.11	-1	1229358..1230854	+	498	116250921	-	RL1151	-	hypothetical protein
1155	 60.00	0	1230985..1231344	+	119	116250922	-	RL1152	-	putative transmembrane protein
1156	 61.19	0	1231646..1232083	-	145	116250923	-	RL1154	-	hypothetical protein
1157	 65.80	+1	1232414..1233217	+	267	116250924	-	RL1155	-	putative glycosyl transferase
1158	 63.88	0	1233183..1234580	-	465	116250925	-	RL1156	-	putative two component sensor histidine kinase transcriptional regulator
1159	 64.35	0	1234567..1235256	-	229	116250926	-	RL1157	-	putative two-component response regulator transcriptional regulatory protein
1160	 61.87	0	1235723..1236118	+	131	116250927	-	RL1159	-	hypothetical protein
1161	 61.67	0	1236170..1236769	-	199	116250928	-	RL1160	-	putative cytochrome c protein
1162	 63.01	0	1236898..1237689	-	263	116250929	-	RL1161	-	hypothetical protein
1163	 55.46	-1	1237944..1238282	-	112	116250930	-	RL1162	-	putative response regulator
1164	 60.22	0	1238348..1239463	-	371	116250931	-	RL1163	-	putative two-component sensor histidine kinase transcriptional regulatory protein
1165	 68.34	+2	1239888..1240484	-	198	116250932	-	RL1164	-	hypothetical protein
1166	 57.23	-1	1240502..1240819	-	105	116250933	-	RL1165	-	hypothetical protein
1167	 58.46	0	1241165..1241554	-	129	116250934	-	RL1166	-	putative ribonuclease-L-PSP family protein
1168	 62.75	0	1241692..1242303	+	203	116250935	-	RL1167	-	TetR family transcriptional regulator
1169	 58.56	0	1242406..1242738	+	110	116250936	-	RL1168	-	HTH family transcriptional regulator
1170	 59.44	0	1242735..1243094	+	119	116250937	-	RL1169	-	hypothetical protein
1171	 56.37	-1	1243141..1243752	+	203	116250938	clpP	RL1170	-	ATP-dependent Clp protease proteolytic subunit
1172	 60.27	0	1244138..1244356	+	72	116250939	-	RL1171	-	hypothetical protein
1173	 57.60	-1	1244403..1244777	+	124	116250940	-	RL1172	-	putative transmembrane protein
61.51	MEAN

3.25	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.