IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.82   STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
847	 50.83	-2	869419..871287	-	622	190890486	-	RHECIAT_CH0000864	-	hypothetical protein
848	 56.48	-1	871417..873909	+	830	190890487	-	RHECIAT_CH0000865	-	probable type I restriction-modification system protein, methyltransferase subunit
849	 55.22	-1	873906..875180	+	424	190890488	-	RHECIAT_CH0000866	-	probable type I restriction-modification system protein, specificity subunit
850	 56.57	-1	875220..878288	+	1022	190890489	-	RHECIAT_CH0000867	-	probable type I restriction-modification system protein, restriction subunit
851	 54.75	-2	878308..879012	+	234	190890490	-	RHECIAT_CH0000868	-	hypothetical protein
852	 56.79	-1	879024..879803	+	259	190890491	-	RHECIAT_CH0000869	-	hypothetical protein
853	 55.69	-1	879956..880957	-	333	190890492	-	RHECIAT_CH0000870	-	probable restriction endonuclease protein
854	 53.64	-2	882576..883220	+	214	190890493	-	RHECIAT_CH0000871	-	hypothetical protein
855	 52.89	-2	883290..884153	-	287	190890494	-	RHECIAT_CH0000872	-	hypothetical protein
856	 66.74	+1	884969..886249	+	426	190890495	ppx1	RHECIAT_CH0000874	-	exopolyphosphatase protein
857	 62.50	0	886259..886978	+	239	190890496	ftsJ	RHECIAT_CH0000875	-	ribosomal RNA methyltransferase/cell division protein
858	 63.80	0	887013..887396	+	127	190890497	-	RHECIAT_CH0000876	-	putative lactoylglutathione lyase protein
859	 64.21	0	887401..888822	-	473	190890498	-	RHECIAT_CH0000877	-	probable efflux transporter, permease protein
860	 61.83	0	889065..890057	+	330	190890499	-	RHECIAT_CH0000878	-	putative beta-lactamase family protein
861	 65.79	+1	890267..891751	+	494	190890500	guaB	RHECIAT_CH0000879	-	inosine 5'-monophosphate dehydrogenase protein
862	 60.90	0	891754..892308	+	184	190890501	-	RHECIAT_CH0000880	-	hypothetical protein
863	 62.94	0	892317..893201	-	294	190890502	-	RHECIAT_CH0000881	-	probable transcriptional regulator protein, LysR family
864	 60.45	0	893327..894082	+	251	190890503	-	RHECIAT_CH0000882	-	probable dehydrogenase protein
865	 60.67	0	894189..894605	+	138	190890504	-	RHECIAT_CH0000883	-	hypothetical protein
866	 61.99	0	895059..895700	+	213	190890505	-	RHECIAT_CH0000884	-	probable transcriptional regulator protein, TetR family
867	 64.26	0	895707..896663	-	318	190890506	-	RHECIAT_CH0000885	-	probable transcriptional regulator protein, LysR family
868	 61.00	0	896865..897164	+	99	190890507	-	RHECIAT_CH0000886	-	hypothetical protein
869	 61.90	0	897253..898134	-	293	190890508	-	RHECIAT_CH0000887	-	hypothetical protein
870	 63.46	0	898283..899656	-	457	190890509	gshA	RHECIAT_CH0000888	-	gamma-glutamylcysteine synthetase protein
871	 65.04	0	899804..900541	-	245	190890510	-	RHECIAT_CH0000889	-	hypothetical protein
872	 65.60	+1	900609..902114	-	501	190890511	-	RHECIAT_CH0000890	-	probable phosphate transport permease protein
873	 61.61	0	902177..902710	-	177	190890512	-	RHECIAT_CH0000891	-	putative NTP pyrophosphohydrolase protein, MuT/nudix family
874	 64.10	0	903022..903918	-	298	190890513	-	RHECIAT_CH0000892	-	probable transcriptional regulator protein, LysR family
875	 65.69	+1	904077..905516	+	479	190890514	glcD	RHECIAT_CH0000893	-	glycolate oxidase protein, subunit D
876	 66.17	+1	905513..906712	+	399	190890515	glcE	RHECIAT_CH0000894	-	glycolate oxidase protein, subunit E
877	 64.56	0	906834..908207	+	457	190890516	glcF	RHECIAT_CH0000895	-	glycolate oxidase protein, subunit F
878	 62.68	0	908204..908629	+	141	190890517	-	RHECIAT_CH0000896	-	hypothetical protein
879	 60.30	0	908752..909426	-	224	190890518	lpxQ	RHECIAT_CH0000897	-	lipid A oxidase (involved in formation of 2-aminogluconate) protein
880	 64.05	0	909549..910235	-	228	190890519	-	RHECIAT_CH0000898	-	hypothetical protein
881	 65.60	+1	910371..911120	-	249	190890520	-	RHECIAT_CH0000899	-	hypothetical protein
882	 60.48	0	911367..911996	+	209	190890521	tag	RHECIAT_CH0000900	-	DNA-3-methyladenine glycosylase I protein
883	 62.52	0	911993..912499	+	168	190890522	-	RHECIAT_CH0000901	-	hypothetical protein
884	 60.00	0	912581..913285	-	234	190890523	-	RHECIAT_CH0000902	-	putative hydrolase protein, HAD superfamily
885	 64.19	0	913523..914572	+	349	190890524	-	RHECIAT_CH0000903	-	putative aldo/keto reductase protein
886	 53.33	-2	914762..915121	-	119	190890525	-	RHECIAT_CH0000904	-	hypothetical protein
887	 66.67	+1	915199..915567	-	122	190890526	-	RHECIAT_CH0000905	-	hypothetical protein
888	 64.42	0	915627..916382	-	251	190890527	-	RHECIAT_CH0000906	-	hypothetical protein
889	 63.43	0	916404..918041	+	545	190890528	hisS	RHECIAT_CH0000907	-	histidyl-tRNA synthetase protein
890	 65.78	+1	918216..919337	+	373	190890529	hisZ	RHECIAT_CH0000908	-	ATP phosphoribosyltransferase involved in histidine biosynthesis protein
891	 64.66	0	919334..920029	+	231	190890530	hisG	RHECIAT_CH0000909	-	ATP phosphoribosyltransferase protein
892	 63.93	0	920110..920547	-	145	190890531	-	RHECIAT_CH0000910	-	hypothetical conserved membrane protein
893	 60.06	0	920750..921460	+	236	190890532	gstch3	RHECIAT_CH0000911	-	glutathione S-transferase protein
894	 58.64	0	921639..922049	-	136	190890533	-	RHECIAT_CH0000912	-	hypothetical protein
895	 58.16	-1	922167..922742	+	191	190890534	-	RHECIAT_CH0000913	-	hypothetical protein
896	 62.09	0	922799..924436	-	545	190890535	groELch1	RHECIAT_CH0000914	-	60 kDa chaperonin, heat shock protein
897	 60.61	0	924507..924803	-	98	190890536	groESch1	RHECIAT_CH0000915	-	10 kDa chaperonin, heat shock protein
898	 63.72	0	925138..925986	+	282	190890537	-	RHECIAT_CH0000916	-	putative hydrolase protein, HAD superfamily
899	 64.23	0	926001..926984	+	327	190890538	ribF	RHECIAT_CH0000917	-	riboflavin kinase/FMN adenylyltransferase protein
900	 57.30	-1	927011..927469	-	152	190890539	-	RHECIAT_CH0000918	-	putative plasmid stabilization protein
901	 57.58	-1	927466..927729	-	87	190890540	-	RHECIAT_CH0000919	-	hypothetical protein
902	 63.23	0	928081..930987	+	968	190890541	ileS	RHECIAT_CH0000920	-	isoleucyl-tRNA synthetase protein
903	 64.60	0	931119..931748	+	209	190890542	-	RHECIAT_CH0000921	-	hypothetical protein
904	 64.38	0	932020..932457	-	145	190890543	codAch	RHECIAT_CH0000922	-	cytosine deaminase protein
905	 69.04	+2	932548..934485	+	645	190890544	-	RHECIAT_CH0000923	-	probable RNA-pseudouridine synthase protein, ribosomal large subunit B
906	 63.28	0	934466..935026	+	186	190890545	-	RHECIAT_CH0000924	-	putative methylase protein
907	 63.49	0	935040..935921	+	293	190890546	-	RHECIAT_CH0000925	-	putative hydrolase protein
908	 62.50	0	935910..936389	-	159	190890547	-	RHECIAT_CH0000926	-	hypothetical protein
909	 62.90	0	936393..936764	-	123	190890548	-	RHECIAT_CH0000927	-	putative glyoxalase protein
910	 65.56	+1	936876..938690	-	604	190890549	kefB	RHECIAT_CH0000928	-	glutathione-regulated potassium-efflux transporter protein
911	 64.59	0	938810..940156	+	448	190890550	pmbA	RHECIAT_CH0000929	-	modulator of DNA gyrase protein
912	 66.67	+1	940246..941055	+	269	190890551	-	RHECIAT_CH0000930	-	probable inositol monophosphatase protein
913	 55.82	-1	941119..941367	+	82	190890552	-	RHECIAT_CH0000931	-	hypothetical protein
914	 64.47	0	941550..942869	+	439	190890553	kdtA	RHECIAT_CH0000932	-	3-deoxy-D-manno-octulosonic acid transferase protein
915	 63.90	0	942879..943601	+	240	190890554	-	RHECIAT_CH0000933	-	probable phosphoglycolate phosphatase protein
916	 66.67	+1	943716..944759	+	347	190890555	lpxK	RHECIAT_CH0000934	-	tetraacyldisaccharide 4'-kinase protein
917	 55.10	-1	944847..945140	+	97	190890556	-	RHECIAT_CH0000935	-	hypothetical protein
918	 61.90	0	945233..945463	-	76	190890557	-	RHECIAT_CH0000936	-	hypothetical protein
919	 67.33	+1	945531..947351	-	606	190890558	mutL	RHECIAT_CH0000937	-	DNA mismatch repair protein
920	 62.62	0	947534..949264	+	576	190890559	-	RHECIAT_CH0000938	-	probable two-component sensor histidine kinase protein
921	 61.83	0	949422..950786	+	454	190890560	-	RHECIAT_CH0000939	-	putative sensory box/GGDEF family protein
922	 62.54	0	951003..951608	-	201	190890561	-	RHECIAT_CH0000940	-	hypothetical protein
923	 62.16	0	951826..952713	-	295	190890562	-	RHECIAT_CH0000941	-	probable gluconolactonase protein
924	 66.67	+1	952718..953350	-	210	190890563	dgoA	RHECIAT_CH0000942	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase protein
925	 68.63	+1	953364..954278	-	304	190890564	dgoK	RHECIAT_CH0000943	-	2-dehydro-3-deoxygalactonokinase protein
926	 64.07	0	954278..955048	-	256	190890565	fabG1	RHECIAT_CH0000944	-	3-oxoacyl-[acyl-carrier-protein] reductase protein
927	 65.41	+1	955152..955949	+	265	190890566	-	RHECIAT_CH0000945	-	putative transcriptional regulator protein, IclR family
928	 54.50	-2	956091..956279	-	62	190890567	-	RHECIAT_CH0000946	-	hypothetical protein
929	 59.51	0	956255..956995	+	246	190890568	-	RHECIAT_CH0000947	-	putative transcriptional regulator protein, LuxR family
930	 60.33	0	957141..957503	+	120	190890569	-	RHECIAT_CH0000948	-	hypothetical protein
931	 65.91	+1	957529..958713	+	394	190890570	-	RHECIAT_CH0000949	-	hypothetical protein
932	 59.20	0	959150..960127	+	325	190890571	corAch	RHECIAT_CH0000950	-	magnesium/cobalt transporter protein
933	 62.45	0	960145..962043	+	632	190890572	kup1	RHECIAT_CH0000951	-	potassium transporter protein
934	 62.60	0	962342..963520	+	392	190890573	-	RHECIAT_CH0000952	-	putative cell wall hydrolase protein involved in spore germination
935	 59.00	0	963793..964131	+	112	190890574	atpI	RHECIAT_CH0000953	-	ATP synthase protein, subunit I
936	 57.77	-1	964194..964946	+	250	190890575	atpB	RHECIAT_CH0000954	-	ATP synthase protein, subunit A
937	 60.96	0	965014..965241	+	75	190890576	atpE	RHECIAT_CH0000955	-	ATP synthase protein, subunit C
938	 66.19	+1	965319..965942	+	207	190890577	atpF1	RHECIAT_CH0000956	-	ATP synthase protein, subunit B'
939	 62.80	0	965946..966437	+	163	190890578	atpF2	RHECIAT_CH0000957	-	ATP synthase protein, subunit B
940	 67.10	+1	966836..967525	-	229	190890579	rnhB	RHECIAT_CH0000958	-	ribonuclease HII protein
941	 64.85	0	967692..968849	-	385	190890580	-	RHECIAT_CH0000959	-	putative radical SAM domain protein
942	 66.47	+1	968989..969507	+	172	190890581	-	RHECIAT_CH0000960	-	putative glycosyltransferase protein
943	 59.54	0	969872..970264	+	130	190890582	-	RHECIAT_CH0000961	-	hypothetical protein
944	 64.67	0	970304..970855	-	183	190890583	moaB	RHECIAT_CH0000962	-	molybdenum cofactor biosynthesis protein
945	 66.89	+1	970855..971748	-	297	190890584	ispE	RHECIAT_CH0000963	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase protein
946	 64.00	0	971761..973596	-	611	190890585	-	RHECIAT_CH0000964	-	hypothetical protein
61.82	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.