IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.82 STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3156	 61.86	0	3217526..3218149	-	207	190892795	-	RHECIAT_CH0003211	-	hypothetical protein
3157	 65.67	+1	3218314..3219318	+	334	190892796	-	RHECIAT_CH0003212	-	putative methanol dehydrogenase regulator MoxR-like protein
3158	 66.34	+1	3219332..3220252	+	306	190892797	-	RHECIAT_CH0003213	-	hypothetical protein
3159	 65.28	0	3220249..3223065	+	938	190892798	-	RHECIAT_CH0003214	-	hypothetical protein
3160	 64.11	0	3223067..3225139	+	690	190892799	-	RHECIAT_CH0003215	-	hypothetical protein
3161	 65.71	+1	3225144..3225560	+	138	190892800	-	RHECIAT_CH0003216	-	putative acetyltransferase protein
3162	 63.91	0	3225555..3226061	-	168	190892801	-	RHECIAT_CH0003217	-	probable acetyltransferase protein
3163	 60.89	0	3226660..3227646	+	328	190892802	-	RHECIAT_CH0003218	-	putative glutathione S-transferase protein
3164	 62.89	0	3227653..3228129	-	158	190892803	-	RHECIAT_CH0003219	-	putative hydrolase protein, MutT/nudix family
3165	 64.43	0	3228173..3229111	+	312	190892804	-	RHECIAT_CH0003220	-	putative phosphoesterase protein
3166	 60.43	0	3229270..3229830	+	186	190892805	-	RHECIAT_CH0003221	-	hypothetical protein
3167	 66.67	+1	3230017..3230526	+	169	190892806	rpoE3	RHECIAT_CH0003222	-	RNA polymerase sigma factor protein (sigma-24)
3168	 66.55	+1	3230528..3231370	+	280	190892807	-	RHECIAT_CH0003223	-	hypothetical protein
3169	 61.39	0	3231556..3233280	-	574	190892808	leuA2	RHECIAT_CH0003224	-	2-isopropylmalate synthase protein
3170	 65.58	+1	3233625..3234824	-	399	190892809	-	RHECIAT_CH0003225	-	putative benzoate transporter protein
3171	 60.86	0	3234980..3235771	+	263	190892810	-	RHECIAT_CH0003226	-	putative short-chain dehydrogenase/reductase SDR protein
3172	 60.17	0	3235880..3236464	-	194	190892811	clpP3	RHECIAT_CH0003227	-	endopeptidase Clp protein, subunit 3
3173	 65.51	+1	3236693..3237472	+	259	190892812	-	RHECIAT_CH0003228	-	hypothetical protein
3174	 58.97	0	3237611..3238078	-	155	190892813	-	RHECIAT_CH0003229	-	probable GTP cyclohydrolase I protein
3175	 61.53	0	3238075..3238989	-	304	190892814	-	RHECIAT_CH0003230	-	probable cation efflux protein
3176	 67.40	+1	3239172..3239849	-	225	190892815	-	RHECIAT_CH0003231	-	hypothetical protein
3177	 61.67	0	3239864..3240103	-	79	190892816	-	RHECIAT_CH0003232	-	hypothetical protein
3178	 62.97	0	3240229..3242418	-	729	190892817	trpE	RHECIAT_CH0003233	-	anthranilate synthase includes: glutamine amidotransferase protein
3179	 60.47	0	3242686..3244944	-	752	190892818	-	RHECIAT_CH0003234	-	probable outer membrane iron receptor protein
3180	 64.63	0	3245197..3246180	+	327	190892819	-	RHECIAT_CH0003235	-	hypothetical protein
3181	 61.90	0	3246313..3247992	-	559	190892820	fhs	RHECIAT_CH0003236	-	formate-tetrahydrofolate ligase protein
3182	 56.50	-1	3248148..3248678	+	176	190892821	-	RHECIAT_CH0003237	-	hypothetical protein
3183	 59.24	0	3248675..3249643	-	322	190892822	-	RHECIAT_CH0003238	-	hypothetical protein
3184	 60.47	0	3249951..3250676	+	241	190892823	-	RHECIAT_CH0003239	-	probable transcriptional regulator protein, LuxR family
3185	 60.39	0	3250800..3251930	-	376	190892824	-	RHECIAT_CH0003240	-	hypothetical protein
3186	 63.13	0	3252065..3253138	-	357	190892825	-	RHECIAT_CH0003241	-	hypothetical protein
3187	 61.19	0	3253209..3253811	-	200	190892826	tdk	RHECIAT_CH0003242	-	thymidine kinase protein
3188	 60.92	0	3254048..3255004	+	318	190892827	proX	RHECIAT_CH0003243	-	proline/glycine betaine ABC transporter, substrate-binding protein
3189	 62.77	0	3255079..3255924	+	281	190892828	proW	RHECIAT_CH0003244	-	proline/glycine betaine ABC transporter, permease protein
3190	 64.77	0	3255921..3256973	+	350	190892829	proV	RHECIAT_CH0003245	-	proline/glycine betaine ABC transporter, ATP-binding protein
3191	 59.20	0	3257005..3257754	+	249	190892830	-	RHECIAT_CH0003246	-	hypothetical protein
3192	 59.75	0	3257864..3258181	+	105	190892831	nolRch	RHECIAT_CH0003247	-	transcriptional regulator protein (repressor of nodulation genes), ArsR family
3193	 61.31	0	3258447..3259772	+	441	190892832	-	RHECIAT_CH0003248	-	probable adenosylmethionine--8-amino-7-oxononanoate aminotransferase protein
3194	 58.33	-1	3259851..3260726	-	291	190892833	-	RHECIAT_CH0003249	-	putative phosphohydrolase protein
3195	 46.79	-2	3260677..3260988	-	103	190892834	-	RHECIAT_CH0003250	-	hypothetical protein
3196	 64.04	0	3261231..3262334	+	367	190892835	braC1	RHECIAT_CH0003251	-	amino acid ABC transporter, substrate-binding protein
3197	 63.43	0	3262453..3264150	+	565	190892836	adeC1	RHECIAT_CH0003252	-	adenine deaminase protein
3198	 56.72	-1	3264209..3264409	+	66	190892837	-	RHECIAT_CH0003253	-	hypothetical protein
3199	 61.93	0	3264663..3266309	-	548	190892838	-	RHECIAT_CH0003254	-	probable alpha-glucosidase protein
3200	 57.81	-1	3266593..3268173	+	526	190892839	oppA	RHECIAT_CH0003255	-	oligopeptide ABC transporter, substrate-binding protein
3201	 60.06	0	3268222..3269145	+	307	190892840	oppB	RHECIAT_CH0003256	-	oligopeptide ABC transporter, permease protein
3202	 63.40	0	3269142..3270059	+	305	190892841	oppC	RHECIAT_CH0003257	-	oligopeptide ABC transporter, permease protein
3203	 63.79	0	3270062..3271069	+	335	190892842	oppD	RHECIAT_CH0003258	-	oligopeptide ABC transporter, ATP-binding protein
3204	 64.24	0	3271062..3272048	+	328	190892843	oppF	RHECIAT_CH0003259	-	oligopeptide ABC transporter, ATP-binding protein
3205	 58.19	-1	3272393..3272734	+	113	190892844	-	RHECIAT_CH0003260	-	hypothetical protein
3206	 63.85	0	3272956..3273843	+	295	190892845	kdgK	RHECIAT_CH0003261	-	2-dehydro-3-deoxygluconokinase protein
3207	 65.10	0	3273931..3274122	-	63	190892846	gstI	RHECIAT_CH0003262	-	glutamine synthetase translation inhibitor protein
3208	 59.37	0	3274554..3275594	+	346	190892847	glnII	RHECIAT_CH0003263	-	glutamine synthetase II protein
3209	 63.28	0	3275831..3277012	+	393	190892848	-	RHECIAT_CH0003264	-	probable glycosyltransferase protein
3210	 62.03	0	3277103..3278116	-	337	190892849	-	RHECIAT_CH0003265	-	putative lipase protein
3211	 45.31	-2	3278106..3278297	+	63	190892850	-	RHECIAT_CH0003266	-	hypothetical protein
3212	 61.04	0	3278282..3278725	+	147	190892851	-	RHECIAT_CH0003267	-	probable transcriptional regulator protein, MarR family
3213	 63.43	0	3278802..3280223	-	473	190892852	engA	RHECIAT_CH0003268	-	GTP-binding protein
3214	 64.77	0	3280240..3280923	-	227	190892853	-	RHECIAT_CH0003269	-	hypothetical protein
3215	 60.51	0	3281027..3281611	-	194	190892854	-	RHECIAT_CH0003270	-	putative nitrate reductase protein
3216	 63.33	0	3281733..3282722	+	329	190892855	-	RHECIAT_CH0003271	-	hypothetical protein
3217	 55.53	-1	3282949..3284214	-	421	190892856	bacA	RHECIAT_CH0003272	-	transporter protein required for bacteroid development
3218	 68.40	+1	3284340..3285548	-	402	190892857	-	RHECIAT_CH0003273	-	putative permease protein
3219	 62.98	0	3285694..3286263	+	189	190892858	-	RHECIAT_CH0003274	-	putative transcriptional regulator protein, PadR family
3220	 59.48	0	3286510..3287859	+	449	190892859	-	RHECIAT_CH0003275	-	hypothetical protein
3221	 64.03	0	3288240..3288998	-	252	190892860	map2	RHECIAT_CH0003276	-	methionine aminopeptidase protein
3222	 64.50	0	3289036..3290097	-	353	190892861	-	RHECIAT_CH0003277	-	probable oxidoreductase protein
3223	 61.54	0	3290353..3290820	-	155	190892862	-	RHECIAT_CH0003278	-	hypothetical protein
3224	 63.57	0	3290919..3292178	-	419	190892863	-	RHECIAT_CH0003279	-	probable RNA polymerase sigma factor protein (sigma-70)
3225	 58.67	0	3292175..3292549	-	124	190892864	-	RHECIAT_CH0003280	-	hypothetical protein
3226	 64.39	0	3292691..3294184	-	497	190892865	glpKch2	RHECIAT_CH0003281	-	glycerol kinase protein
3227	 58.82	0	3294340..3295116	+	258	190892866	bdhA	RHECIAT_CH0003282	-	D-beta-hydroxybutyrate dehydrogenase protein
3228	 64.28	0	3295145..3296611	+	488	190892867	xdhA	RHECIAT_CH0003283	-	xanthine dehydrogenase protein, A subunit
3229	 62.95	0	3296827..3299166	+	779	190892868	xdhB	RHECIAT_CH0003284	-	xanthine dehydrogenase protein, B subunit
3230	 64.58	0	3299283..3300095	+	270	190892869	xdhC	RHECIAT_CH0003285	-	xanthine dehydrogenase protein, C subunit
3231	 60.51	0	3300071..3300265	-	64	190892870	-	RHECIAT_CH0003286	-	hypothetical protein
3232	 62.43	0	3300367..3301263	+	298	190892871	-	RHECIAT_CH0003287	-	probable transcriptional regulator protein, LysR family
3233	 58.26	-1	3301319..3301651	-	110	190892872	-	RHECIAT_CH0003288	-	hypothetical protein
3234	 61.43	0	3301814..3302500	-	228	190892873	-	RHECIAT_CH0003289	-	hypothetical conserved fusion protein
3235	 59.89	0	3302625..3303863	+	412	190892874	-	RHECIAT_CH0003290	-	hypothetical protein
3236	 62.55	0	3303860..3305170	+	436	190892875	guaD	RHECIAT_CH0003291	-	guanine deaminase protein
3237	 53.33	-2	3305190..3305534	+	114	190892876	-	RHECIAT_CH0003292	-	hypothetical protein
3238	 55.82	-1	3305527..3305904	+	125	190892877	-	RHECIAT_CH0003293	-	putative transcriptional regulator protein
3239	 64.22	0	3305983..3307125	+	380	190892878	lldD3	RHECIAT_CH0003294	-	L-lactate dehydrogenase (cytochrome) protein
3240	 55.37	-1	3307294..3307833	+	179	190892879	-	RHECIAT_CH0003295	-	hypothetical protein
3241	 54.33	-2	3307896..3309314	-	472	190892880	-	RHECIAT_CH0003296	-	hypothetical protein
3242	 55.60	-1	3309510..3310259	+	249	190892881	-	RHECIAT_CH0003297	-	hypothetical protein
3243	 62.84	0	3310361..3310882	-	173	190892882	-	RHECIAT_CH0003298	-	hypothetical protein
3244	 58.25	-1	3310884..3312047	-	387	190892883	-	RHECIAT_CH0003299	-	hypothetical protein
3245	 54.67	-2	3312278..3313594	-	438	190892884	-	RHECIAT_CH0003300	-	putative RNA-directed DNA polymerase (reverse transcriptase) protein
3246	 51.45	-2	3313594..3314178	-	194	190892885	-	RHECIAT_CH0003301	-	hypothetical protein
3247	 58.23	-1	3314435..3316354	-	639	190892886	-	RHECIAT_CH0003302	-	hypothetical protein
3248	 58.45	0	3316365..3318215	-	616	190892887	-	RHECIAT_CH0003303	-	hypothetical protein
3249	 55.51	-1	3318328..3318990	-	220	190892888	-	RHECIAT_CH0003304	-	hypothetical protein
3250	 62.23	0	3319246..3320349	+	367	190892889	-	RHECIAT_CH0003305	-	hypothetical protein
3251	 56.54	-1	3320641..3321213	-	190	190892890	-	RHECIAT_CH0003306	-	hypothetical protein
3252	 57.02	-1	3321244..3321606	-	120	190892891	-	RHECIAT_CH0003307	-	hypothetical protein
3253	 53.71	-2	3321836..3322792	+	318	190892892	-	RHECIAT_CH0003308	-	hypothetical protein
3254	 48.53	-2	3322905..3323108	+	67	190892893	-	RHECIAT_CH0003309	-	hypothetical protein
3255	 59.37	0	3323258..3328822	-	1854	190892894	-	RHECIAT_CH0003310	-	putative superfamily I DNA and RNA helicase protein
61.82	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.