IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.82 STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2954	 62.41	0	3012959..3014134	-	391	190892593	-	RHECIAT_CH0003008	-	probable sarcosine oxidase protein
2955	 64.05	0	3014146..3015291	-	381	190892594	-	RHECIAT_CH0003009	-	probable sarcosine oxidase protein
2956	 55.07	-1	3015406..3016026	-	206	190892595	-	RHECIAT_CH0003010	-	probable transglycosylase protein
2957	 61.19	0	3016289..3016963	-	224	190892596	-	RHECIAT_CH0003011	-	probable N-acetylmuramoyl-L-alanine amidase protein
2958	 58.90	0	3017047..3017754	-	235	190892597	djlA	RHECIAT_CH0003012	-	molecular chaperone protein, DnaJ family
2959	 58.10	-1	3018004..3018213	-	69	190892598	-	RHECIAT_CH0003013	-	hypothetical protein
2960	 61.63	0	3018235..3019446	+	403	190892599	pfk	RHECIAT_CH0003014	-	6-phosphofructokinase protein
2961	 62.74	0	3019504..3020139	+	211	190892600	-	RHECIAT_CH0003015	-	probable amino acid efflux protein, LysE family
2962	 61.34	0	3020595..3021476	+	293	190892601	-	RHECIAT_CH0003016	-	probable transglycosylase protein
2963	 65.75	+1	3021513..3022937	-	474	190892602	-	RHECIAT_CH0003017	-	putative 6-aminohexanoate-dimer hydrolase protein
2964	 61.45	0	3023128..3024372	+	414	190892603	btaA	RHECIAT_CH0003018	-	S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase protein
2965	 62.07	0	3024369..3025043	+	224	190892604	btaB	RHECIAT_CH0003019	-	S-adenosylmethionine:diacylgycerolhomoserine-N-methyltransferase protein
2966	 58.77	0	3025172..3025969	+	265	190892605	lyc	RHECIAT_CH0003020	-	glycoside hydrolase protein
2967	 66.99	+1	3026051..3027271	+	406	190892606	-	RHECIAT_CH0003021	-	probable membrane-bound lytic murein transglycosylase protein
2968	 64.90	0	3027411..3028316	+	301	190892607	-	RHECIAT_CH0003022	-	putative permease protein
2969	 63.46	0	3028774..3029676	-	300	190892608	metF	RHECIAT_CH0003023	-	5,10-methylenetetrahydrofolate reductase protein
2970	 64.42	0	3029678..3030703	-	341	190892609	-	RHECIAT_CH0003024	-	probable methyltransferase transcriptional regulator protein, ArsR family
2971	 61.76	0	3032308..3033957	-	549	190892610	-	RHECIAT_CH0003025	-	probable ABC transporter, ATP-binding protein
2972	 62.89	0	3034056..3034796	-	246	190892611	-	RHECIAT_CH0003026	-	probable enterobacter ribonuclease protein
2973	 63.44	0	3035023..3035952	+	309	190892612	-	RHECIAT_CH0003027	-	putative lysophospholipase protein
2974	 60.61	0	3035986..3036942	+	318	190892613	-	RHECIAT_CH0003028	-	putative transporter, permease protein
2975	 63.42	0	3036959..3038161	+	400	190892614	-	RHECIAT_CH0003029	-	putative acyl-CoA transferase/L-carnitine dehydrogenase protein
2976	 64.01	0	3038158..3039816	+	552	190892615	ilvG	RHECIAT_CH0003030	-	acetolactate synthase II protein, large subunit
2977	 61.45	0	3039856..3040200	-	114	190892616	-	RHECIAT_CH0003031	-	putative translation initiation inhibitor protein
2978	 62.54	0	3040273..3040611	-	112	190892617	-	RHECIAT_CH0003032	-	hypothetical protein
2979	 64.64	0	3040684..3041523	-	279	190892618	-	RHECIAT_CH0003033	-	hypothetical protein
2980	 64.17	0	3041882..3043282	+	466	190892619	-	RHECIAT_CH0003034	-	hypothetical protein
2981	 60.96	0	3043457..3044209	-	250	190892620	parA1	RHECIAT_CH0003035	-	chromosome partitioning protein A
2982	 62.85	0	3044384..3045535	-	383	190892621	-	RHECIAT_CH0003036	-	probable alcohol dehydrogenase protein
2983	 62.55	0	3045532..3046917	-	461	190892622	-	RHECIAT_CH0003037	-	probable aldehyde dehydrogenase protein
2984	 60.53	0	3047160..3048527	-	455	190892623	glnA3	RHECIAT_CH0003038	-	glutamine synthetase protein
2985	 60.97	0	3048674..3050236	-	520	190892624	-	RHECIAT_CH0003039	-	putative amino acid permease protein
2986	 64.06	0	3050357..3051046	-	229	190892625	-	RHECIAT_CH0003040	-	putative N-formylglutamate amidohydrolase protein
2987	 61.71	0	3051229..3052176	+	315	190892626	-	RHECIAT_CH0003041	-	probable transcriptional regulator protein, RpiR family
2988	 60.33	0	3052366..3053469	+	367	190892627	-	RHECIAT_CH0003042	-	probable ABC transporter, substrate-binding protein
2989	 60.07	0	3053543..3054436	+	297	190892628	-	RHECIAT_CH0003043	-	probable ABC transporter, permease protein
2990	 60.96	0	3054433..3055221	+	262	190892629	-	RHECIAT_CH0003044	-	probable ABC transporter, permease protein
2991	 61.58	0	3055234..3056295	+	353	190892630	-	RHECIAT_CH0003045	-	probable ABC transporter, ATP-binding protein
2992	 63.47	0	3056370..3057371	-	333	190892631	-	RHECIAT_CH0003046	-	probable sugar ABC transporter, ATP-binding protein
2993	 62.81	0	3057382..3058443	-	353	190892632	-	RHECIAT_CH0003047	-	probable oxidoreductase protein
2994	 62.14	0	3058440..3059279	-	279	190892633	-	RHECIAT_CH0003048	-	probable sugar ABC transporter, permease protein
2995	 60.23	0	3059289..3060236	-	315	190892634	-	RHECIAT_CH0003049	-	probable sugar ABC transporter, permease protein
2996	 60.40	0	3060454..3061713	-	419	190892635	-	RHECIAT_CH0003050	-	probable sugar ABC transporter, substrate-binding protein
2997	 57.55	-1	3061776..3062093	+	105	190892636	-	RHECIAT_CH0003051	-	hypothetical protein
2998	 64.18	0	3062244..3063128	+	294	190892637	-	RHECIAT_CH0003052	-	putative N-acetylglucosamine kinase protein
2999	 66.80	+1	3063125..3063889	+	254	190892638	-	RHECIAT_CH0003053	-	probable transcriptional regulator protein
3000	 54.35	-2	3063909..3064184	-	91	190892639	-	RHECIAT_CH0003054	-	hypothetical protein
3001	 57.69	-1	3064210..3064443	-	77	190892640	-	RHECIAT_CH0003055	-	hypothetical protein
3002	 63.11	0	3064784..3068578	-	1264	190892641	metH	RHECIAT_CH0003056	-	5-methyltetrahydrofolate--homocysteine S-methyltransferase protein
3003	 64.05	0	3068835..3070094	+	419	190892642	-	RHECIAT_CH0003057	-	putative N-acylglucosamine 2-epimerase protein
3004	 63.03	0	3070137..3070631	-	164	190892643	-	RHECIAT_CH0003058	-	hypothetical protein
3005	 62.09	0	3070721..3071332	-	203	190892644	-	RHECIAT_CH0003059	-	putative flavin reductase protein
3006	 66.40	+1	3071336..3072079	-	247	190892645	-	RHECIAT_CH0003060	-	probable hydantoin racemase protein
3007	 61.68	0	3072081..3072902	-	273	190892646	-	RHECIAT_CH0003061	-	probable spermidine/putrescine ABC transporter, permease protein
3008	 60.49	0	3072904..3073809	-	301	190892647	-	RHECIAT_CH0003062	-	probable spermidine/putrescine ABC transporter, permease protein
3009	 61.35	0	3074109..3075407	-	432	190892648	-	RHECIAT_CH0003063	-	probable spermidine/putrescine ABC transporter, substrate-binding protein
3010	 64.46	0	3075459..3076547	-	362	190892649	-	RHECIAT_CH0003064	-	probable spermidine/putrescine ABC transporter, ATP-binding protein
3011	 64.84	0	3076816..3077526	+	236	190892650	-	RHECIAT_CH0003065	-	probable transcriptional regulator protein, GntR family
3012	 61.80	0	3077550..3078083	+	177	190892651	-	RHECIAT_CH0003066	-	hypothetical protein
3013	 61.46	0	3078198..3078581	-	127	190892652	-	RHECIAT_CH0003067	-	hypothetical protein
3014	 60.87	0	3078932..3079138	+	68	190892653	-	RHECIAT_CH0003068	-	hypothetical protein
3015	 65.83	+1	3079165..3079404	+	79	190892654	-	RHECIAT_CH0003069	-	hypothetical protein
3016	 59.60	0	3079789..3079986	+	65	190892655	-	RHECIAT_CH0003070	-	hypothetical protein
3017	 57.31	-1	3080675..3081016	+	113	190892656	-	RHECIAT_CH0003071	-	hypothetical protein
3018	 59.77	0	3080985..3081767	+	260	190892657	cinR	RHECIAT_CH0003072	-	autoinducer transcriptional regulator protein
3019	 61.71	0	3081989..3082654	+	221	190892658	cinI	RHECIAT_CH0003073	-	autoinducer synthesis protein
3020	 56.77	-1	3082651..3082842	+	63	190892659	-	RHECIAT_CH0003074	-	hypothetical protein
3021	 60.70	0	3082963..3083331	-	122	190892660	-	RHECIAT_CH0003075	-	probable two-component response regulator protein
3022	 66.67	+1	3084742..3085014	-	90	190892661	-	RHECIAT_CH0003077	-	hypothetical protein
3023	 52.94	-2	3085298..3085552	-	84	190892662	-	RHECIAT_CH0003078	-	hypothetical protein
3024	 61.67	0	3085654..3085893	+	79	190892663	-	RHECIAT_CH0003079	-	hypothetical protein
3025	 59.38	0	3086021..3086473	+	150	190892664	-	RHECIAT_CH0003080	-	hypothetical protein
3026	 58.50	0	3086470..3086763	+	97	190892665	-	RHECIAT_CH0003081	-	hypothetical protein
3027	 55.79	-1	3086804..3087235	+	143	190892666	-	RHECIAT_CH0003082	-	hypothetical protein
3028	 58.63	0	3087298..3087546	+	82	190892667	-	RHECIAT_CH0003083	-	hypothetical protein
3029	 52.20	-2	3087621..3088484	-	287	190892668	-	RHECIAT_CH0003084	-	hypothetical protein
3030	 58.66	0	3088595..3091018	-	807	190892669	-	RHECIAT_CH0003085	-	hypothetical fusion protein
3031	 52.99	-2	3091299..3092117	+	272	190892670	-	RHECIAT_CH0003086	-	hypothetical protein
3032	 61.62	0	3092215..3092709	-	164	190892671	-	RHECIAT_CH0003087	-	hypothetical protein
3033	 56.38	-1	3092874..3093437	-	187	190892672	-	RHECIAT_CH0003088	-	hypothetical protein
3034	 67.25	+1	3093434..3093949	-	171	190892673	-	RHECIAT_CH0003089	-	hypothetical protein
3035	 61.67	0	3093946..3094425	-	159	190892674	-	RHECIAT_CH0003090	-	hypothetical protein
3036	 59.55	0	3094572..3095780	-	402	190892675	-	RHECIAT_CH0003091	-	hypothetical protein
3037	 56.93	-1	3096064..3096474	-	136	190892676	-	RHECIAT_CH0003092	-	hypothetical protein
3038	 54.26	-2	3096529..3096810	+	93	190892677	-	RHECIAT_CH0003093	-	hypothetical protein
3039	 59.69	0	3097207..3097464	-	85	190892678	-	RHECIAT_CH0003094	-	hypothetical protein
3040	 57.57	-1	3097464..3098639	-	391	190892679	-	RHECIAT_CH0003095	-	hypothetical protein
3041	 61.39	0	3098626..3099042	-	138	190892680	-	RHECIAT_CH0003096	-	hypothetical protein
3042	 55.72	-1	3099201..3100406	-	401	190892681	-	RHECIAT_CH0003097	-	hypothetical protein
3043	 51.99	-2	3100687..3101340	+	217	190892682	-	RHECIAT_CH0003098	-	hypothetical protein
3044	 57.76	-1	3101887..3102369	-	160	190892683	-	RHECIAT_CH0003099	-	hypothetical protein
3045	 63.87	0	3102466..3102894	-	142	190892684	-	RHECIAT_CH0003100	-	hypothetical protein
3046	 63.82	0	3103450..3104187	+	245	190892685	-	RHECIAT_CH0003101	-	hypothetical conserved membrane protein
3047	 69.28	+2	3104618..3104962	-	114	190892686	-	RHECIAT_CH0003102	-	hypothetical protein
3048	 68.30	+1	3105189..3105494	-	101	190892687	-	RHECIAT_CH0003103	-	hypothetical protein
3049	 64.96	0	3105676..3106143	-	155	190892688	-	RHECIAT_CH0003104	-	hypothetical protein
3050	 63.70	0	3106187..3106792	-	201	190892689	-	RHECIAT_CH0003105	-	hypothetical protein
3051	 59.35	0	3106986..3107231	+	81	190892690	-	RHECIAT_CH0003106	-	hypothetical protein
3052	 61.65	0	3107279..3107677	-	132	190892691	-	RHECIAT_CH0003107	-	hypothetical protein
3053	 65.95	+1	3107773..3108465	-	230	190892692	-	RHECIAT_CH0003108	-	hypothetical protein
61.82	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.