IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.82 STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2724	 60.26	0	2769435..2771792	+	785	190892363	-	RHECIAT_CH0002776	-	putative transcriptional regulator protein
2725	 55.61	-1	2771796..2772356	+	186	190892364	-	RHECIAT_CH0002777	-	hypothetical protein
2726	 55.16	-1	2772364..2772702	+	112	190892365	-	RHECIAT_CH0002778	-	hypothetical protein
2727	 57.02	-1	2772904..2773245	+	113	190892366	-	RHECIAT_CH0002779	-	hypothetical protein
2728	 58.68	0	2773288..2774226	+	312	190892367	-	RHECIAT_CH0002780	-	hypothetical protein
2729	 60.06	0	2774367..2774699	-	110	190892368	-	RHECIAT_CH0002781	-	hypothetical protein
2730	 60.92	0	2774930..2775730	+	266	190892369	-	RHECIAT_CH0002782	-	hypothetical protein
2731	 60.94	0	2776017..2776679	+	220	190892370	-	RHECIAT_CH0002783	-	putative amino acid efflux protein, LysE family
2732	 50.33	-2	2776684..2777283	-	199	190892371	-	RHECIAT_CH0002784	-	hypothetical protein
2733	 63.65	0	2777489..2780272	-	927	190892372	-	RHECIAT_CH0002785	-	putative sensory box/GGDEF family protein
2734	 52.57	-2	2780695..2781297	+	200	190892373	-	RHECIAT_CH0002786	-	hypothetical protein
2735	 62.10	0	2781499..2782395	-	298	190892374	-	RHECIAT_CH0002787	-	putative transcriptional regulator protein, LysR family
2736	 65.78	+1	2782538..2783554	+	338	190892375	-	RHECIAT_CH0002788	-	putative dehydrogenase protein
2737	 66.58	+1	2783720..2784928	+	402	190892376	-	RHECIAT_CH0002789	-	putative transporter protein, MFS family
2738	 60.20	0	2784966..2785166	-	66	190892377	-	RHECIAT_CH0002790	-	hypothetical protein
2739	 61.69	0	2785248..2786954	+	568	190892378	cyaF1	RHECIAT_CH0002791	-	adenylate cyclase protein
2740	 59.85	0	2787040..2787699	-	219	190892379	-	RHECIAT_CH0002792	-	hypothetical protein
2741	 63.54	0	2787726..2789711	-	661	190892380	lacZ1	RHECIAT_CH0002793	-	beta-D-galactosidase protein
2742	 66.00	+1	2789875..2790921	-	348	190892381	-	RHECIAT_CH0002794	-	probable sugar ABC transporter, ATP-binding protein
2743	 62.32	0	2791058..2791909	-	283	190892382	-	RHECIAT_CH0002795	-	probable sugar ABC transporter, permease protein
2744	 61.36	0	2791909..2792793	-	294	190892383	-	RHECIAT_CH0002796	-	probable sugar ABC transporter, permease protein
2745	 61.80	0	2793024..2794298	-	424	190892384	-	RHECIAT_CH0002797	-	probable sugar ABC transporter, substrate-binding protein
2746	 68.37	+1	2794539..2795714	+	391	190892385	-	RHECIAT_CH0002798	-	probable transcriptional regulator protein, ROK family
2747	 64.00	0	2795879..2796328	-	149	190892386	-	RHECIAT_CH0002799	-	hypothetical protein
2748	 66.55	+1	2796512..2797375	-	287	190892387	-	RHECIAT_CH0002800	-	putative transporter, permease protein
2749	 65.45	+1	2797579..2798979	+	466	190892388	-	RHECIAT_CH0002801	-	putative transcriptional regulator protein, GntR family
2750	 50.17	-2	2799099..2799692	-	197	190892389	-	RHECIAT_CH0002802	-	hypothetical protein
2751	 59.95	0	2799837..2800238	-	133	190892390	-	RHECIAT_CH0002803	-	putative two-component response regulator protein
2752	 60.29	0	2800249..2801988	-	579	190892391	-	RHECIAT_CH0002804	-	putative two-component sensor histidine kinase protein
2753	 59.22	0	2802103..2802639	+	178	190892392	-	RHECIAT_CH0002805	-	putative acetyltransferase protein
2754	 65.87	+1	2802901..2803530	-	209	190892393	-	RHECIAT_CH0002806	-	hypothetical protein
2755	 73.38	+2	2803559..2804779	-	406	190892394	-	RHECIAT_CH0002807	-	hypothetical protein
2756	 64.66	0	2804896..2805693	+	265	190892395	-	RHECIAT_CH0002808	-	hypothetical protein
2757	 67.51	+1	2805699..2806052	+	117	190892396	-	RHECIAT_CH0002809	-	hypothetical protein
2758	 60.86	0	2806481..2807083	+	200	190892397	-	RHECIAT_CH0002810	-	putative DNA helicase protein
2759	 59.42	0	2807279..2807485	-	68	190892398	-	RHECIAT_CH0002811	-	hypothetical protein
2760	 67.06	+1	2807453..2808475	+	340	190892399	-	RHECIAT_CH0002812	-	probable alkanal monooxygenase (bacterial liciferase alpha chain) protein
2761	 66.11	+1	2808582..2809487	+	301	190892400	-	RHECIAT_CH0002813	-	probable transcriptional regulator protein, LysR family
2762	 67.53	+1	2809450..2810727	-	425	190892401	-	RHECIAT_CH0002814	-	putative efflux transporter protein
2763	 68.38	+1	2810724..2811365	-	213	190892402	-	RHECIAT_CH0002815	-	putative transcriptional regulator protein, ArsR family
2764	 61.40	0	2811525..2812208	+	227	190892403	-	RHECIAT_CH0002816	-	putative methyltransferase protein
2765	 66.54	+1	2812189..2813007	-	272	190892404	-	RHECIAT_CH0002817	-	probable ferrichrome ABC transporter, ATP-binding protein
2766	 65.76	+1	2813015..2814007	-	330	190892405	-	RHECIAT_CH0002818	-	probable ferrichrome ABC transporter, permease protein
2767	 68.06	+1	2814049..2815053	-	334	190892406	-	RHECIAT_CH0002819	-	probable ferrichrome ABC transporter, permease protein
2768	 62.68	0	2815073..2816050	-	325	190892407	-	RHECIAT_CH0002820	-	probable ferrichrome ABC transporter, substrate-binding protein
2769	 71.63	+2	2816190..2817278	-	362	190892408	-	RHECIAT_CH0002821	-	probable adenylate cyclase protein
2770	 58.22	-1	2817466..2817690	+	74	190892409	-	RHECIAT_CH0002822	-	hypothetical protein
2771	 67.32	+1	2817771..2818076	-	101	190892410	-	RHECIAT_CH0002823	-	hypothetical protein
2772	 66.67	+1	2818240..2818686	-	148	190892411	-	RHECIAT_CH0002824	-	hypothetical protein
2773	 64.60	0	2819164..2819598	+	144	190892412	ribH2	RHECIAT_CH0002825	-	6,7-dimethyl-8-ribityllumazine synthase protein (riboflavin synthase beta chain)
2774	 63.04	0	2819774..2820463	+	229	190892413	-	RHECIAT_CH0002826	-	putative glyoxalase protein
2775	 63.45	0	2820574..2821350	-	258	190892414	-	RHECIAT_CH0002827	-	hypothetical protein
2776	 61.13	0	2821456..2822358	-	300	190892415	-	RHECIAT_CH0002828	-	probable transcriptional regulator protein, LysR family
2777	 60.74	0	2822549..2823274	+	241	190892416	-	RHECIAT_CH0002829	-	putative 3-oxoacyl-[acyl-carrier-protein] reductase protein
2778	 66.46	+1	2823268..2823756	+	162	190892417	-	RHECIAT_CH0002830	-	putative translation initiation inhibitor protein
2779	 56.27	-1	2823817..2824326	-	169	190892418	-	RHECIAT_CH0002831	-	hypothetical protein
2780	 61.75	0	2824523..2828203	+	1226	190892419	-	RHECIAT_CH0002832	-	putative exported protein, TonB-dependent receptor
2781	 65.41	+1	2828203..2830185	+	660	190892420	cyaK	RHECIAT_CH0002833	-	adenylate cyclase protein
2782	 61.51	0	2830417..2830998	-	193	190892421	-	RHECIAT_CH0002834	-	probable transcriptional regulator protein, TetR family
2783	 61.11	0	2831139..2831696	+	185	190892422	-	RHECIAT_CH0002835	-	hypothetical protein
2784	 61.77	0	2831858..2832838	+	326	190892423	-	RHECIAT_CH0002836	-	putative mRNA-binding protein
2785	 66.00	+1	2833043..2833795	-	250	190892424	-	RHECIAT_CH0002837	-	putative nucleotidyltransferase protein
2786	 63.65	0	2834074..2834769	+	231	190892425	-	RHECIAT_CH0002838	-	probable fumarylpyruvate hydrolase protein
2787	 62.71	0	2834782..2835312	+	176	190892426	-	RHECIAT_CH0002839	-	probable acetyltransferase protein
2788	 63.42	0	2835602..2836309	-	235	190892427	-	RHECIAT_CH0002840	-	putative isoprenylcysteine methyltransferase protein
2789	 57.99	-1	2836513..2836950	-	145	190892428	-	RHECIAT_CH0002841	-	hypothetical protein
2790	 59.16	0	2837308..2837880	-	190	190892429	-	RHECIAT_CH0002842	-	hypothetical protein
2791	 60.05	0	2838072..2839295	+	407	190892430	-	RHECIAT_CH0002843	-	hypothetical protein
2792	 63.09	0	2839554..2839916	+	120	190892431	-	RHECIAT_CH0002844	-	hypothetical protein
2793	 59.90	0	2840191..2840589	-	132	190892432	zur	RHECIAT_CH0002845	-	zinc uptake transcriptional regulator protein, Fur family
2794	 65.44	+1	2840586..2841401	-	271	190892433	znuB	RHECIAT_CH0002846	-	zinc uptake ABC transporter, permease protein
2795	 64.98	0	2841394..2842344	-	316	190892434	znuC	RHECIAT_CH0002847	-	zinc uptake ABC transporter, ATP-binding protein
2796	 63.93	0	2842446..2843468	+	340	190892435	znuA	RHECIAT_CH0002848	-	zinc uptake ABC transporter, substrate-binding protein
2797	 64.84	0	2843588..2844793	+	401	190892436	-	RHECIAT_CH0002849	-	probable cobalamin biosynthesis protein
2798	 61.49	0	2844790..2844963	+	57	190892437	-	RHECIAT_CH0002850	-	hypothetical protein
2799	 61.47	0	2845304..2845630	-	108	190892438	-	RHECIAT_CH0002851	-	hypothetical protein
2800	 68.61	+1	2847683..2848915	+	410	190892439	-	RHECIAT_CH0002852	-	probable chromate transporter protein
2801	 64.84	0	2849042..2849425	+	127	190892440	-	RHECIAT_CH0002853	-	putative glyoxalase/bleomycin resistance-like protein
2802	 63.96	0	2849519..2850850	+	443	190892441	-	RHECIAT_CH0002854	-	probable hemolysin protein
2803	 63.64	0	2850851..2852272	-	473	190892442	chrA	RHECIAT_CH0002855	-	chromate transporter protein
2804	 64.34	0	2852274..2853089	-	271	190892443	chrB	RHECIAT_CH0002856	-	chromate resistance protein
2805	 64.15	0	2853117..2853713	+	198	190892444	-	RHECIAT_CH0002857	-	hypothetical protein
2806	 55.05	-1	2853991..2854386	-	131	190892445	-	RHECIAT_CH0002858	-	hypothetical protein
2807	 57.58	-1	2854396..2854692	-	98	190892446	-	RHECIAT_CH0002859	-	hypothetical protein
2808	 56.73	-1	2854752..2855576	+	274	190892447	-	RHECIAT_CH0002860	-	hypothetical protein
2809	 56.63	-1	2855770..2856357	+	195	190892448	-	RHECIAT_CH0002861	-	hypothetical protein
2810	 63.38	0	2856776..2857687	-	303	190892449	-	RHECIAT_CH0002863	-	putative phenazine antibiotic biosynthesis protein
2811	 64.20	0	2857925..2858695	-	256	190892450	-	RHECIAT_CH0002864	-	putative NTP pyrophosphohydrolase protein, MuT/nudix family
2812	 61.08	0	2858692..2859801	-	369	190892451	-	RHECIAT_CH0002865	-	putative endonuclease/exonuclease/phosphatase family protein
2813	 67.65	+1	2859922..2860941	-	339	190892452	afuC2	RHECIAT_CH0002866	-	iron(III) ABC transporter, ATP-binding protein
2814	 64.54	0	2860929..2862623	-	564	190892453	afuB2	RHECIAT_CH0002867	-	iron(III) ABC transporter, permease protein
2815	 63.60	0	2862631..2863608	-	325	190892454	afuA3	RHECIAT_CH0002868	-	iron(III) ABC transporter, substrate-binding protein
2816	 66.15	+1	2863740..2864507	-	255	190892455	-	RHECIAT_CH0002869	-	putative hydrolase protein
2817	 60.51	0	2864697..2865167	+	156	190892456	-	RHECIAT_CH0002870	-	probable transcriptional regulator protein, MarR family
2818	 63.55	0	2865361..2866419	+	352	190892457	mocA1	RHECIAT_CH0002871	-	oxidoreductase protein
2819	 61.75	0	2866740..2867960	-	406	190892458	-	RHECIAT_CH0002872	-	probable aminotransferase protein
2820	 48.44	-2	2868012..2868203	+	63	190892459	-	RHECIAT_CH0002873	-	hypothetical protein
2821	 63.76	0	2868279..2869379	+	366	190892460	ilvE2	RHECIAT_CH0002874	-	branched-chain amino acid aminotransferase protein
2822	 61.56	0	2869543..2870130	+	195	190892461	-	RHECIAT_CH0002875	-	putative SAM-dependent methyltransferase protein
2823	 54.22	-2	2870643..2871389	+	248	190892462	-	RHECIAT_CH0002876	-	putative SAM-dependent methyltransferase protein
61.82	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.