IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.82 STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2650	 63.71	0	2700211..2701023	+	270	190892289	-	RHECIAT_CH0002701	-	hypothetical protein
2651	 66.10	+1	2701435..2702139	+	234	190892290	-	RHECIAT_CH0002702	-	hypothetical protein
2652	 60.58	0	2702227..2702604	-	125	190892291	-	RHECIAT_CH0002703	-	putative transcriptional regulator protein
2653	 63.33	0	2702736..2703575	+	279	190892292	-	RHECIAT_CH0002704	-	hypothetical conserved membrane protein
2654	 55.37	-1	2703674..2704204	-	176	190892293	-	RHECIAT_CH0002705	-	hypothetical protein
2655	 58.33	-1	2704314..2704901	-	195	190892294	-	RHECIAT_CH0002706	-	hypothetical protein
2656	 63.25	0	2704963..2705430	-	155	190892295	-	RHECIAT_CH0002707	-	probable transcriptional regulator protein, AsnC family
2657	 62.22	0	2705556..2706770	+	404	190892296	argG1	RHECIAT_CH0002708	-	argininosuccinate synthase protein
2658	 60.34	0	2707404..2708177	+	257	190892297	-	RHECIAT_CH0002709	-	hypothetical protein
2659	 60.91	0	2708314..2708904	-	196	190892298	-	RHECIAT_CH0002710	-	hypothetical protein
2660	 62.10	0	2708901..2710697	-	598	190892299	-	RHECIAT_CH0002711	-	probable ABC transporter, ATP-binding protein
2661	 61.69	0	2711000..2711401	+	133	190892300	-	RHECIAT_CH0002712	-	hypothetical protein
2662	 57.38	-1	2711457..2711930	-	157	190892301	-	RHECIAT_CH0002713	-	putative 3-demethylubiquinone-9 3-O-methyltransferase protein
2663	 55.90	-1	2712128..2712712	+	194	190892302	-	RHECIAT_CH0002714	-	hypothetical protein
2664	 58.80	0	2712927..2713142	+	71	190892303	-	RHECIAT_CH0002715	-	hypothetical protein
2665	 54.70	-2	2713204..2713437	+	77	190892304	-	RHECIAT_CH0002716	-	hypothetical protein
2666	 68.73	+1	2713603..2714328	+	241	190892305	dapB2	RHECIAT_CH0002717	-	dihydrodipicolinate reductase protein
2667	 62.42	0	2714422..2715387	-	321	190892306	-	RHECIAT_CH0002718	-	probable ornithine cyclodeaminase protein
2668	 61.14	0	2715467..2715973	-	168	190892307	-	RHECIAT_CH0002719	-	probable acetyltransferase protein
2669	 56.67	-1	2716453..2716842	-	129	190892308	-	RHECIAT_CH0002720	-	hypothetical protein
2670	 62.50	0	2717019..2717834	-	271	190892309	-	RHECIAT_CH0002721	-	probable transcriptional regulator protein, AraC family
2671	 63.95	0	2717931..2718851	+	306	190892310	-	RHECIAT_CH0002722	-	putative dioxygenase protein
2672	 65.77	+1	2719168..2720511	+	447	190892311	rhbB	RHECIAT_CH0002723	-	L-2,4-diaminobutyrate decarboxylase protein
2673	 58.29	-1	2720728..2721300	+	190	190892312	-	RHECIAT_CH0002724	-	hypothetical protein
2674	 58.63	0	2721369..2721791	-	140	190892313	-	RHECIAT_CH0002725	-	hypothetical protein
2675	 51.21	-2	2721941..2722147	-	68	190892314	-	RHECIAT_CH0002726	-	hypothetical protein
2676	 63.76	0	2722150..2723733	-	527	190892315	-	RHECIAT_CH0002727	-	probable Na+/H+ antiporter protein
2677	 59.67	0	2723949..2725850	+	633	190892316	kup2	RHECIAT_CH0002728	-	potassium transporter protein
2678	 60.49	0	2725941..2726717	+	258	190892317	pcaHch	RHECIAT_CH0002729	-	protocatechuate 3,4-dioxygenase protein, beta chain
2679	 61.70	0	2726935..2727216	+	93	190892318	-	RHECIAT_CH0002730	-	putative nodulation protein
2680	 57.61	-1	2727237..2728727	-	496	190892319	plyA1	RHECIAT_CH0002731	-	polysaccharidase protein
2681	 57.56	-1	2729074..2730567	-	497	190892320	plyA2	RHECIAT_CH0002732	-	polysaccharidase protein
2682	 63.42	0	2731144..2731851	-	235	190892321	-	RHECIAT_CH0002733	-	hypothetical protein
2683	 68.76	+2	2732021..2732497	+	158	190892322	-	RHECIAT_CH0002734	-	hypothetical protein
2684	 66.22	+1	2732494..2733840	+	448	190892323	-	RHECIAT_CH0002735	-	hypothetical protein
2685	 70.39	+2	2734169..2735377	-	402	190892324	-	RHECIAT_CH0002736	-	putative membrane transporter protein
2686	 65.96	+1	2735412..2736551	-	379	190892325	-	RHECIAT_CH0002737	-	putative membrane transporter protein
2687	 63.95	0	2736548..2737246	-	232	190892326	-	RHECIAT_CH0002738	-	putative ABC transporter, ATP-binding protein
2688	 65.97	+1	2737373..2738665	-	430	190892327	-	RHECIAT_CH0002739	-	putative efflux transporter protein
2689	 63.53	0	2738890..2739942	-	350	190892328	-	RHECIAT_CH0002740	-	probable transcriptional regulator protein, AraC family
2690	 62.89	0	2740038..2740619	-	193	190892329	-	RHECIAT_CH0002741	-	hypothetical protein
2691	 60.66	0	2740728..2741093	-	121	190892330	-	RHECIAT_CH0002742	-	hypothetical conserved membrane protein
2692	 60.28	0	2741101..2741820	-	239	190892331	coxP	RHECIAT_CH0002743	-	cytochrome c oxidase protein, subunit III
2693	 63.31	0	2741832..2742545	-	237	190892332	coxO	RHECIAT_CH0002744	-	cytochrome c oxidase protein, subunit III
2694	 60.40	0	2742542..2744311	-	589	190892333	coxN	RHECIAT_CH0002745	-	cytochrome c oxidase protein, subunit I
2695	 62.76	0	2744393..2745211	-	272	190892334	coxM	RHECIAT_CH0002746	-	cytochrome c oxidase protein, subunit II
2696	 57.21	-1	2745358..2745759	-	133	190892335	-	RHECIAT_CH0002747	-	probable cytochrome c protein
2697	 64.18	0	2745920..2746843	-	307	190892336	-	RHECIAT_CH0002748	-	putative hydrolase protein
2698	 65.78	+1	2747010..2747573	-	187	190892337	-	RHECIAT_CH0002749	-	hypothetical protein
2699	 64.56	0	2747703..2748983	-	426	190892338	-	RHECIAT_CH0002750	-	putative beta-lactamase family protein
2700	 60.26	0	2749018..2749407	+	129	190892339	-	RHECIAT_CH0002751	-	hypothetical protein
2701	 65.53	+1	2749404..2749841	-	145	190892340	-	RHECIAT_CH0002752	-	hypothetical protein
2702	 63.83	0	2750061..2751083	+	340	190892341	ftsZ1	RHECIAT_CH0002753	-	cell division protein
2703	 60.18	0	2751158..2752684	-	508	190892342	-	RHECIAT_CH0002754	-	putative fusion protein: autoaggregation protein and hypothetical conserved protein
2704	 51.39	-2	2752889..2753104	-	71	190892343	-	RHECIAT_CH0002755	-	hypothetical protein
2705	 67.39	+1	2753101..2753925	-	274	190892344	-	RHECIAT_CH0002756	-	putative transcriptional regulator protein
2706	 68.13	+1	2754017..2754907	+	296	190892345	-	RHECIAT_CH0002757	-	putative polysaccharide synthesis protein (nucleoside-diphosphate-sugar epimerase)
2707	 65.24	0	2755120..2755329	-	69	190892346	-	RHECIAT_CH0002758	-	hypothetical protein
2708	 62.68	0	2755588..2756013	-	141	190892347	-	RHECIAT_CH0002759	-	hypothetical protein
2709	 61.49	0	2756118..2756291	+	57	190892348	-	RHECIAT_CH0002760	-	hypothetical protein
2710	 59.41	0	2757394..2757903	-	169	190892349	-	RHECIAT_CH0002762	-	hypothetical protein
2711	 59.09	0	2757963..2758424	+	153	190892350	-	RHECIAT_CH0002763	-	hypothetical protein
2712	 58.56	0	2758558..2759001	-	147	190892351	-	RHECIAT_CH0002764	-	hypothetical protein
2713	 56.84	-1	2759035..2759268	-	77	190892352	-	RHECIAT_CH0002765	-	hypothetical protein
2714	 61.76	0	2759265..2759957	-	230	190892353	-	RHECIAT_CH0002766	-	putative intracellular protease/amidase protein
2715	 63.07	0	2760211..2761212	+	333	190892354	-	RHECIAT_CH0002767	-	putative transcriptional regulator protein, LacI family
2716	 58.94	0	2761381..2762415	+	344	190892355	-	RHECIAT_CH0002768	-	probable desaturase protein
2717	 61.22	0	2762412..2762723	+	103	190892356	mocEch	RHECIAT_CH0002769	-	ferredoxin of the Rieseke type protein
2718	 62.01	0	2762796..2763740	+	314	190892357	mocBch1	RHECIAT_CH0002770	-	rhizopine ABC transporter, substrate-binding protein
2719	 66.09	+1	2763801..2765006	+	401	190892358	mocFch	RHECIAT_CH0002771	-	ferredoxin--NAD(+) reductase protein
2720	 62.23	0	2765003..2765836	+	277	190892359	-	RHECIAT_CH0002772	-	hypothetical protein
2721	 58.74	0	2766038..2767690	+	550	190892360	-	RHECIAT_CH0002773	-	putative sensory box/GGDEF family protein
2722	 56.71	-1	2767811..2768272	+	153	190892361	-	RHECIAT_CH0002774	-	hypothetical protein
2723	 58.52	0	2768380..2769435	+	351	190892362	-	RHECIAT_CH0002775	-	probable menaquinone biosynthesis methyltransferase protein
2724	 60.26	0	2769435..2771792	+	785	190892363	-	RHECIAT_CH0002776	-	putative transcriptional regulator protein
2725	 55.61	-1	2771796..2772356	+	186	190892364	-	RHECIAT_CH0002777	-	hypothetical protein
2726	 55.16	-1	2772364..2772702	+	112	190892365	-	RHECIAT_CH0002778	-	hypothetical protein
2727	 57.02	-1	2772904..2773245	+	113	190892366	-	RHECIAT_CH0002779	-	hypothetical protein
2728	 58.68	0	2773288..2774226	+	312	190892367	-	RHECIAT_CH0002780	-	hypothetical protein
2729	 60.06	0	2774367..2774699	-	110	190892368	-	RHECIAT_CH0002781	-	hypothetical protein
2730	 60.92	0	2774930..2775730	+	266	190892369	-	RHECIAT_CH0002782	-	hypothetical protein
2731	 60.94	0	2776017..2776679	+	220	190892370	-	RHECIAT_CH0002783	-	putative amino acid efflux protein, LysE family
2732	 50.33	-2	2776684..2777283	-	199	190892371	-	RHECIAT_CH0002784	-	hypothetical protein
2733	 63.65	0	2777489..2780272	-	927	190892372	-	RHECIAT_CH0002785	-	putative sensory box/GGDEF family protein
2734	 52.57	-2	2780695..2781297	+	200	190892373	-	RHECIAT_CH0002786	-	hypothetical protein
2735	 62.10	0	2781499..2782395	-	298	190892374	-	RHECIAT_CH0002787	-	putative transcriptional regulator protein, LysR family
2736	 65.78	+1	2782538..2783554	+	338	190892375	-	RHECIAT_CH0002788	-	putative dehydrogenase protein
2737	 66.58	+1	2783720..2784928	+	402	190892376	-	RHECIAT_CH0002789	-	putative transporter protein, MFS family
2738	 60.20	0	2784966..2785166	-	66	190892377	-	RHECIAT_CH0002790	-	hypothetical protein
2739	 61.69	0	2785248..2786954	+	568	190892378	cyaF1	RHECIAT_CH0002791	-	adenylate cyclase protein
2740	 59.85	0	2787040..2787699	-	219	190892379	-	RHECIAT_CH0002792	-	hypothetical protein
2741	 63.54	0	2787726..2789711	-	661	190892380	lacZ1	RHECIAT_CH0002793	-	beta-D-galactosidase protein
2742	 66.00	+1	2789875..2790921	-	348	190892381	-	RHECIAT_CH0002794	-	probable sugar ABC transporter, ATP-binding protein
2743	 62.32	0	2791058..2791909	-	283	190892382	-	RHECIAT_CH0002795	-	probable sugar ABC transporter, permease protein
2744	 61.36	0	2791909..2792793	-	294	190892383	-	RHECIAT_CH0002796	-	probable sugar ABC transporter, permease protein
2745	 61.80	0	2793024..2794298	-	424	190892384	-	RHECIAT_CH0002797	-	probable sugar ABC transporter, substrate-binding protein
2746	 68.37	+1	2794539..2795714	+	391	190892385	-	RHECIAT_CH0002798	-	probable transcriptional regulator protein, ROK family
2747	 64.00	0	2795879..2796328	-	149	190892386	-	RHECIAT_CH0002799	-	hypothetical protein
2748	 66.55	+1	2796512..2797375	-	287	190892387	-	RHECIAT_CH0002800	-	putative transporter, permease protein
2749	 65.45	+1	2797579..2798979	+	466	190892388	-	RHECIAT_CH0002801	-	putative transcriptional regulator protein, GntR family
61.82	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.