IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.82 STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2561	 64.02	0	2616791..2617471	-	226	190892200	-	RHECIAT_CH0002612	-	hypothetical protein
2562	 55.87	-1	2617574..2618536	+	320	190892201	-	RHECIAT_CH0002613	-	putative hydrolase protein
2563	 56.60	-1	2618712..2619029	+	105	190892202	-	RHECIAT_CH0002614	-	hypothetical protein
2564	 56.53	-1	2619198..2621990	-	930	190892203	-	RHECIAT_CH0002615	-	hypothetical protein
2565	 64.12	0	2622453..2623472	+	339	190892204	-	RHECIAT_CH0002616	-	probable transcriptional regulator protein, AraC family
2566	 59.46	0	2623602..2624933	-	443	190892205	-	RHECIAT_CH0002617	-	probable two-component response regulator protein
2567	 55.13	-1	2625120..2625908	-	262	190892206	rrpX	RHECIAT_CH0002618	-	two-component response regulator protein
2568	 60.61	0	2626165..2626494	-	109	190892207	-	RHECIAT_CH0002619	-	hypothetical protein
2569	 60.45	0	2626537..2626890	+	117	190892208	-	RHECIAT_CH0002620	-	probable transcriptional regulator protein, ArsR family
2570	 62.15	0	2626887..2627417	+	176	190892209	-	RHECIAT_CH0002621	-	putative protein-tyrosine-phosphatase protein
2571	 64.81	0	2627417..2628118	+	233	190892210	-	RHECIAT_CH0002622	-	putative glycerol uptake transporter protein, MIP family
2572	 61.94	0	2628115..2628537	+	140	190892211	arsC	RHECIAT_CH0002623	-	arsenate reductase protein
2573	 64.79	0	2628545..2628811	-	88	190892212	-	RHECIAT_CH0002624	-	hypothetical protein
2574	 63.22	0	2628924..2631449	-	841	190892213	-	RHECIAT_CH0002625	-	probable mechanosensitive channel protein
2575	 63.77	0	2631573..2632124	-	183	190892214	-	RHECIAT_CH0002626	-	hypothetical protein
2576	 60.66	0	2632347..2633411	-	354	190892215	-	RHECIAT_CH0002627	-	probable two-component sensor histidine kinase protein
2577	 63.42	0	2633599..2635044	-	481	190892216	-	RHECIAT_CH0002628	-	probable transporter protein
2578	 59.73	0	2635577..2636902	+	441	190892217	-	RHECIAT_CH0002629	-	probable sugar ABC transporter, substrate-binding protein
2579	 61.40	0	2637022..2637990	+	322	190892218	-	RHECIAT_CH0002630	-	probable sugar ABC transporter, permease protein
2580	 62.89	0	2637987..2638940	+	317	190892219	-	RHECIAT_CH0002631	-	probable sugar ABC transporter, permease protein
2581	 61.03	0	2638937..2639149	+	70	190892220	-	RHECIAT_CH0002632	-	hypothetical protein
2582	 64.21	0	2639153..2640250	+	365	190892221	-	RHECIAT_CH0002633	-	probable sugar ABC transporter, ATP-binding protein
2583	 66.28	+1	2640243..2641271	+	342	190892222	-	RHECIAT_CH0002634	-	probable sugar ABC transporter, ATP-binding protein
2584	 67.16	+1	2641326..2642963	+	545	190892223	dhaK	RHECIAT_CH0002635	-	dihydroxyacetone kinase protein
2585	 66.67	+1	2643011..2643631	+	206	190892224	-	RHECIAT_CH0002636	-	probable PTS-dependent dihydroxyacetone kinase protein, ADP-binding subunit
2586	 67.92	+1	2643628..2644026	+	132	190892225	-	RHECIAT_CH0002637	-	probable PTS-dependent dihydroxyacetone kinase protein, phosphotransferase subunit
2587	 59.10	0	2644026..2644382	+	118	190892226	-	RHECIAT_CH0002638	-	probable protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (Enzyme II of the phosphotransferase system)
2588	 68.10	+1	2644366..2645970	+	534	190892227	ptsI	RHECIAT_CH0002639	-	phosphoenolpyruvate--protein phosphotransferase protein (Enzyme I of the phosphotransferase system)
2589	 62.99	0	2645972..2646379	+	135	190892228	-	RHECIAT_CH0002640	-	hypothetical protein
2590	 64.95	0	2646430..2647419	+	329	190892229	-	RHECIAT_CH0002641	-	probable PTS-dependent dihydroxyacetone kinase protein, dihydroxyacetone binding subunit
2591	 61.32	0	2647439..2648167	-	242	190892230	-	RHECIAT_CH0002642	-	hypothetical protein
2592	 63.12	0	2648164..2649123	-	319	190892231	-	RHECIAT_CH0002643	-	probable deacetylase protein
2593	 66.07	+1	2649236..2650570	+	444	190892232	-	RHECIAT_CH0002644	-	probable hydrolase protein
2594	 57.58	-1	2650598..2650993	-	131	190892233	-	RHECIAT_CH0002645	-	hypothetical protein
2595	 60.36	0	2651063..2651284	-	73	190892234	-	RHECIAT_CH0002646	-	hypothetical protein
2596	 59.08	0	2651464..2651832	-	122	190892235	-	RHECIAT_CH0002647	-	hypothetical protein
2597	 61.04	0	2651853..2652350	+	165	190892236	-	RHECIAT_CH0002648	-	probable transcriptional regulator protein, MarR family
2598	 58.82	0	2652378..2652785	+	135	190892237	-	RHECIAT_CH0002649	-	putative NTP pyrophosphohydrolase protein, MutT/nudix family
2599	 64.18	0	2652820..2653863	-	347	190892238	cyaCch	RHECIAT_CH0002650	-	adenylate cyclase protein
2600	 61.36	0	2653972..2654367	-	131	190892239	ohr	RHECIAT_CH0002651	-	organic hydroperoxide resistance protein
2601	 62.54	0	2654527..2655204	-	225	190892240	-	RHECIAT_CH0002652	-	hypothetical protein
2602	 58.05	-1	2655332..2655679	-	115	190892241	-	RHECIAT_CH0002653	-	hypothetical protein
2603	 65.46	+1	2655806..2657134	-	442	190892242	-	RHECIAT_CH0002654	-	hypothetical protein
2604	 64.94	0	2657286..2658908	-	540	190892243	mcpV	RHECIAT_CH0002655	-	methyl-accepting chemotaxis protein
2605	 65.10	0	2659376..2659759	+	127	190892244	-	RHECIAT_CH0002656	-	probable acyl-CoA hydrolase protein
2606	 59.18	0	2659785..2660372	+	195	190892245	-	RHECIAT_CH0002657	-	hypothetical protein
2607	 65.98	+1	2660717..2661889	-	390	190892246	-	RHECIAT_CH0002658	-	hypothetical protein
2608	 66.40	+1	2662016..2663527	-	503	190892247	-	RHECIAT_CH0002659	-	hypothetical protein
2609	 56.61	-1	2663649..2663996	-	115	190892248	-	RHECIAT_CH0002660	-	hypothetical protein
2610	 63.82	0	2664516..2665322	-	268	190892249	-	RHECIAT_CH0002661	-	probable SAM-dependent methyltransferase protein
2611	 65.42	+1	2665445..2666326	-	293	190892250	-	RHECIAT_CH0002662	-	hypothetical conserved membrane protein
2612	 65.68	+1	2666428..2667342	+	304	190892251	-	RHECIAT_CH0002663	-	probable transcriptional regulator protein, LysR family
2613	 59.61	0	2667468..2667722	-	84	190892252	-	RHECIAT_CH0002664	-	hypothetical protein
2614	 62.17	0	2667777..2668154	-	125	190892253	-	RHECIAT_CH0002665	-	putative two-component response regulator protein
2615	 61.48	0	2668338..2668703	-	121	190892254	-	RHECIAT_CH0002666	-	hypothetical protein
2616	 64.01	0	2668813..2669601	-	262	190892255	-	RHECIAT_CH0002667	-	hypothetical protein
2617	 65.11	0	2669810..2670646	+	278	190892256	-	RHECIAT_CH0002668	-	probable adenylate cyclase protein
2618	 54.76	-2	2670928..2671263	+	111	190892257	-	RHECIAT_CH0002669	-	hypothetical protein
2619	 52.20	-2	2671404..2671721	-	105	190892258	-	RHECIAT_CH0002670	-	hypothetical protein
2620	 56.15	-1	2671977..2672366	-	129	190892259	-	RHECIAT_CH0002671	-	hypothetical protein
2621	 61.55	0	2672822..2674561	+	579	190892260	-	RHECIAT_CH0002672	-	hypothetical protein
2622	 57.58	-1	2674626..2674988	-	120	190892261	-	RHECIAT_CH0002673	-	hypothetical protein
2623	 64.79	0	2675296..2678337	+	1013	190892262	uvrB	RHECIAT_CH0002674	-	excinuclease ABC protein, B subunit
2624	 65.12	0	2678689..2679075	+	128	190892263	-	RHECIAT_CH0002675	-	probable acetyltransferase protein
2625	 61.39	0	2679062..2679781	-	239	190892264	-	RHECIAT_CH0002676	-	hypothetical protein
2626	 60.44	0	2679901..2680623	-	240	190892265	-	RHECIAT_CH0002677	-	hypothetical protein
2627	 61.32	0	2680905..2681372	+	155	190892266	-	RHECIAT_CH0002678	-	hypothetical protein
2628	 63.08	0	2681362..2681556	+	64	190892267	-	RHECIAT_CH0002679	-	hypothetical protein
2629	 59.15	0	2681876..2682088	+	70	190892268	cspA4	RHECIAT_CH0002680	-	cold shock protein
2630	 54.47	-2	2682242..2682733	+	163	190892269	-	RHECIAT_CH0002681	-	hypothetical protein
2631	 68.12	+1	2682926..2683891	+	321	190892270	-	RHECIAT_CH0002682	-	putative tRNA-dihydrouridine synthase protein
2632	 66.46	+1	2683958..2684911	-	317	190892271	-	RHECIAT_CH0002683	-	probable serine protease protein, HtrA/DegQ family
2633	 62.96	0	2685478..2686314	+	278	190892272	-	RHECIAT_CH0002684	-	probable chloride peroxidase protein
2634	 58.19	-1	2686522..2686698	+	58	190892273	-	RHECIAT_CH0002685	-	hypothetical protein
2635	 61.57	0	2686920..2687135	+	71	190892274	-	RHECIAT_CH0002686	-	hypothetical protein
2636	 67.86	+1	2687246..2688163	-	305	190892275	-	RHECIAT_CH0002687	-	hypothetical protein
2637	 62.75	0	2688362..2688871	+	169	190892276	-	RHECIAT_CH0002688	-	hypothetical protein
2638	 65.80	+1	2690456..2691034	+	192	190892277	-	RHECIAT_CH0002689	-	hypothetical protein
2639	 65.19	0	2691131..2692075	-	314	190892278	-	RHECIAT_CH0002690	-	hypothetical protein
2640	 64.79	0	2692185..2693465	-	426	190892279	-	RHECIAT_CH0002691	-	probable two-component sensor histidine kinase protein
2641	 63.54	0	2693462..2694133	-	223	190892280	-	RHECIAT_CH0002692	-	probable two-component response regulator protein
2642	 58.20	-1	2694185..2694373	+	62	190892281	-	RHECIAT_CH0002693	-	hypothetical protein
2643	 63.98	0	2694675..2695196	-	173	190892282	-	RHECIAT_CH0002694	-	putative transcriptional regulator protein
2644	 64.64	0	2695287..2695928	+	213	190892283	-	RHECIAT_CH0002695	-	probable dihydrofolate reductase protein
2645	 52.70	-2	2695937..2696251	-	104	190892284	-	RHECIAT_CH0002696	-	hypothetical protein
2646	 64.38	0	2696479..2697924	-	481	190892285	-	RHECIAT_CH0002697	-	probable adenylate cyclase protein
2647	 58.23	-1	2698141..2698389	+	82	190892286	-	RHECIAT_CH0002698	-	hypothetical protein
2648	 65.71	+1	2698544..2699170	-	208	190892287	-	RHECIAT_CH0002699	-	probable transcriptional regulator protein, TetR family
2649	 64.98	0	2699264..2699917	+	217	190892288	-	RHECIAT_CH0002700	-	putative methyltransferase protein
2650	 63.71	0	2700211..2701023	+	270	190892289	-	RHECIAT_CH0002701	-	hypothetical protein
2651	 66.10	+1	2701435..2702139	+	234	190892290	-	RHECIAT_CH0002702	-	hypothetical protein
2652	 60.58	0	2702227..2702604	-	125	190892291	-	RHECIAT_CH0002703	-	putative transcriptional regulator protein
2653	 63.33	0	2702736..2703575	+	279	190892292	-	RHECIAT_CH0002704	-	hypothetical conserved membrane protein
2654	 55.37	-1	2703674..2704204	-	176	190892293	-	RHECIAT_CH0002705	-	hypothetical protein
2655	 58.33	-1	2704314..2704901	-	195	190892294	-	RHECIAT_CH0002706	-	hypothetical protein
2656	 63.25	0	2704963..2705430	-	155	190892295	-	RHECIAT_CH0002707	-	probable transcriptional regulator protein, AsnC family
2657	 62.22	0	2705556..2706770	+	404	190892296	argG1	RHECIAT_CH0002708	-	argininosuccinate synthase protein
2658	 60.34	0	2707404..2708177	+	257	190892297	-	RHECIAT_CH0002709	-	hypothetical protein
2659	 60.91	0	2708314..2708904	-	196	190892298	-	RHECIAT_CH0002710	-	hypothetical protein
2660	 62.10	0	2708901..2710697	-	598	190892299	-	RHECIAT_CH0002711	-	probable ABC transporter, ATP-binding protein
61.82	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.