IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.82 STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2518	 60.32	0	2577821..2578009	+	62	190892157	-	RHECIAT_CH0002569	-	hypothetical protein
2519	 61.71	0	2578028..2579479	-	483	190892158	gnd	RHECIAT_CH0002570	-	6-phosphogluconate dehydrogenase (decarboxylating) protein
2520	 67.55	+1	2579689..2580480	+	263	190892159	-	RHECIAT_CH0002571	-	probable transcriptional regulator protein, AraC family
2521	 60.40	0	2580550..2580948	+	132	190892160	-	RHECIAT_CH0002572	-	hypothetical protein
2522	 60.56	0	2580949..2581308	+	119	190892161	-	RHECIAT_CH0002573	-	putative glyoxalase protein
2523	 61.88	0	2581315..2582025	-	236	190892162	-	RHECIAT_CH0002574	-	hypothetical protein
2524	 63.13	0	2582192..2583124	-	310	190892163	msbB	RHECIAT_CH0002575	-	lipid A lauroyl acyltransferase protein
2525	 63.75	0	2583131..2584159	-	342	190892164	-	RHECIAT_CH0002576	-	probable alcohol dehydrogenase protein
2526	 66.12	+1	2584311..2585597	-	428	190892165	-	RHECIAT_CH0002577	-	probable 3-oxoacyl-[acyl-carrier-protein] synthase protein
2527	 65.84	+1	2585608..2586813	-	401	190892166	-	RHECIAT_CH0002578	-	putative 3-oxoacyl-[acyl-carrier-protein] synthase II protein
2528	 63.98	0	2586810..2587292	-	160	190892167	-	RHECIAT_CH0002579	-	probable hydroxymyristoyl-[acyl-carrier-protein] dehydratase protein
2529	 50.93	-2	2587409..2587783	-	124	190892168	acpXL	RHECIAT_CH0002580	-	acyl-carrier-protein
2530	 62.64	0	2588061..2588780	+	239	190892169	fnrNch	RHECIAT_CH0002581	-	transcriptional regulator protein, Fnr/CRP family
2531	 60.84	0	2588921..2589349	-	142	190892170	-	RHECIAT_CH0002582	-	hypothetical protein
2532	 57.92	-1	2589500..2589739	-	79	190892171	-	RHECIAT_CH0002583	-	hypothetical protein
2533	 65.85	+1	2589792..2590772	-	326	190892172	cobD	RHECIAT_CH0002584	-	cobalamin biosynthesis protein, adenosylcobinamide-phosphate synthase protein
2534	 64.27	0	2590769..2591854	-	361	190892173	cobC	RHECIAT_CH0002585	-	cobalamin biosynthesis protein, pyridoxal-phosphate-dependent aminotransferase protein
2535	 66.67	+1	2591851..2593158	-	435	190892174	cobB	RHECIAT_CH0002586	-	cobalamin biosynthesis protein, cobyrinic acid A,C-diamide synthase protein
2536	 66.55	+1	2593155..2593994	-	279	190892175	cobA	RHECIAT_CH0002587	-	uroporphyrin-III C-methyltransferase protein
2537	 63.91	0	2594296..2595201	-	301	190892176	iunH2	RHECIAT_CH0002588	-	inosine-adenosine-guanosine preferring nucleoside hydrolase protein
2538	 65.00	0	2595316..2595735	-	139	190892177	-	RHECIAT_CH0002589	-	probable precorrin-3B C17-methyltransferase protein
2539	 64.12	0	2595834..2596619	+	261	190892178	-	RHECIAT_CH0002590	-	hypothetical conserved membrane protein
2540	 59.75	0	2596642..2597277	-	211	190892179	cobO	RHECIAT_CH0002591	-	cob(I)alamin adenosyltransferase protein
2541	 65.65	+1	2597294..2601226	-	1310	190892180	cobN	RHECIAT_CH0002592	-	cobalamin biosynthesis protein, cobaltochelatase protein
2542	 63.23	0	2601231..2602277	-	348	190892181	cobW	RHECIAT_CH0002593	-	cobalamin biosynthesis protein
2543	 63.98	0	2602282..2602803	-	173	190892182	cobP	RHECIAT_CH0002594	-	cobP
2544	 66.48	+1	2602800..2603333	-	177	190892183	-	RHECIAT_CH0002595	-	hypothetical protein
2545	 63.32	0	2603730..2605520	+	596	190892184	clc	RHECIAT_CH0002596	-	chloride channel protein
2546	 61.25	0	2605525..2606613	-	362	190892185	-	RHECIAT_CH0002597	-	probable adenylate cyclase protein
2547	 64.95	0	2607067..2608521	-	484	190892186	cobQ	RHECIAT_CH0002598	-	cobalamin biosynthesis protein, cobyric acid synthase protein
2548	 49.82	-2	2608787..2609071	-	94	190892187	-	RHECIAT_CH0002599	-	hypothetical protein
2549	 59.70	0	2609162..2610166	+	334	190892188	-	RHECIAT_CH0002600	-	putative amino acid ABC transporter, substrate-binding protein
2550	 59.32	0	2610199..2610552	+	117	190892189	-	RHECIAT_CH0002601	-	hypothetical protein
2551	 60.90	0	2610657..2610812	-	51	190892190	ecnB	RHECIAT_CH0002602	-	entericidin B signal peptide protein
2552	 63.16	0	2610913..2611854	-	313	190892191	-	RHECIAT_CH0002603	-	probable transcriptional regulator protein, LysR family
2553	 58.60	0	2611860..2612144	+	94	190892192	-	RHECIAT_CH0002604	-	hypothetical protein
2554	 62.73	0	2612261..2612869	-	202	190892193	-	RHECIAT_CH0002605	-	probable amino acid efflux protein, LysE family
2555	 60.75	0	2612969..2613898	+	309	190892194	-	RHECIAT_CH0002606	-	probable transcriptional regulator protein, LysR family
2556	 60.66	0	2614013..2614495	-	160	190892195	greB	RHECIAT_CH0002607	-	transcription elongation factor protein, GreA/GreB family
2557	 61.92	0	2614736..2615452	+	238	190892196	-	RHECIAT_CH0002608	-	putative cation transporter protein
2558	 60.22	0	2615470..2615655	-	61	190892197	-	RHECIAT_CH0002609	-	hypothetical protein
2559	 60.64	0	2615687..2615968	-	93	190892198	-	RHECIAT_CH0002610	-	hypothetical protein
2560	 57.26	-1	2615950..2616183	-	77	190892199	-	RHECIAT_CH0002611	-	hypothetical protein
2561	 64.02	0	2616791..2617471	-	226	190892200	-	RHECIAT_CH0002612	-	hypothetical protein
2562	 55.87	-1	2617574..2618536	+	320	190892201	-	RHECIAT_CH0002613	-	putative hydrolase protein
2563	 56.60	-1	2618712..2619029	+	105	190892202	-	RHECIAT_CH0002614	-	hypothetical protein
2564	 56.53	-1	2619198..2621990	-	930	190892203	-	RHECIAT_CH0002615	-	hypothetical protein
2565	 64.12	0	2622453..2623472	+	339	190892204	-	RHECIAT_CH0002616	-	probable transcriptional regulator protein, AraC family
2566	 59.46	0	2623602..2624933	-	443	190892205	-	RHECIAT_CH0002617	-	probable two-component response regulator protein
2567	 55.13	-1	2625120..2625908	-	262	190892206	rrpX	RHECIAT_CH0002618	-	two-component response regulator protein
2568	 60.61	0	2626165..2626494	-	109	190892207	-	RHECIAT_CH0002619	-	hypothetical protein
2569	 60.45	0	2626537..2626890	+	117	190892208	-	RHECIAT_CH0002620	-	probable transcriptional regulator protein, ArsR family
2570	 62.15	0	2626887..2627417	+	176	190892209	-	RHECIAT_CH0002621	-	putative protein-tyrosine-phosphatase protein
2571	 64.81	0	2627417..2628118	+	233	190892210	-	RHECIAT_CH0002622	-	putative glycerol uptake transporter protein, MIP family
2572	 61.94	0	2628115..2628537	+	140	190892211	arsC	RHECIAT_CH0002623	-	arsenate reductase protein
2573	 64.79	0	2628545..2628811	-	88	190892212	-	RHECIAT_CH0002624	-	hypothetical protein
2574	 63.22	0	2628924..2631449	-	841	190892213	-	RHECIAT_CH0002625	-	probable mechanosensitive channel protein
2575	 63.77	0	2631573..2632124	-	183	190892214	-	RHECIAT_CH0002626	-	hypothetical protein
2576	 60.66	0	2632347..2633411	-	354	190892215	-	RHECIAT_CH0002627	-	probable two-component sensor histidine kinase protein
2577	 63.42	0	2633599..2635044	-	481	190892216	-	RHECIAT_CH0002628	-	probable transporter protein
2578	 59.73	0	2635577..2636902	+	441	190892217	-	RHECIAT_CH0002629	-	probable sugar ABC transporter, substrate-binding protein
2579	 61.40	0	2637022..2637990	+	322	190892218	-	RHECIAT_CH0002630	-	probable sugar ABC transporter, permease protein
2580	 62.89	0	2637987..2638940	+	317	190892219	-	RHECIAT_CH0002631	-	probable sugar ABC transporter, permease protein
2581	 61.03	0	2638937..2639149	+	70	190892220	-	RHECIAT_CH0002632	-	hypothetical protein
2582	 64.21	0	2639153..2640250	+	365	190892221	-	RHECIAT_CH0002633	-	probable sugar ABC transporter, ATP-binding protein
2583	 66.28	+1	2640243..2641271	+	342	190892222	-	RHECIAT_CH0002634	-	probable sugar ABC transporter, ATP-binding protein
2584	 67.16	+1	2641326..2642963	+	545	190892223	dhaK	RHECIAT_CH0002635	-	dihydroxyacetone kinase protein
2585	 66.67	+1	2643011..2643631	+	206	190892224	-	RHECIAT_CH0002636	-	probable PTS-dependent dihydroxyacetone kinase protein, ADP-binding subunit
2586	 67.92	+1	2643628..2644026	+	132	190892225	-	RHECIAT_CH0002637	-	probable PTS-dependent dihydroxyacetone kinase protein, phosphotransferase subunit
2587	 59.10	0	2644026..2644382	+	118	190892226	-	RHECIAT_CH0002638	-	probable protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (Enzyme II of the phosphotransferase system)
2588	 68.10	+1	2644366..2645970	+	534	190892227	ptsI	RHECIAT_CH0002639	-	phosphoenolpyruvate--protein phosphotransferase protein (Enzyme I of the phosphotransferase system)
2589	 62.99	0	2645972..2646379	+	135	190892228	-	RHECIAT_CH0002640	-	hypothetical protein
2590	 64.95	0	2646430..2647419	+	329	190892229	-	RHECIAT_CH0002641	-	probable PTS-dependent dihydroxyacetone kinase protein, dihydroxyacetone binding subunit
2591	 61.32	0	2647439..2648167	-	242	190892230	-	RHECIAT_CH0002642	-	hypothetical protein
2592	 63.12	0	2648164..2649123	-	319	190892231	-	RHECIAT_CH0002643	-	probable deacetylase protein
2593	 66.07	+1	2649236..2650570	+	444	190892232	-	RHECIAT_CH0002644	-	probable hydrolase protein
2594	 57.58	-1	2650598..2650993	-	131	190892233	-	RHECIAT_CH0002645	-	hypothetical protein
2595	 60.36	0	2651063..2651284	-	73	190892234	-	RHECIAT_CH0002646	-	hypothetical protein
2596	 59.08	0	2651464..2651832	-	122	190892235	-	RHECIAT_CH0002647	-	hypothetical protein
2597	 61.04	0	2651853..2652350	+	165	190892236	-	RHECIAT_CH0002648	-	probable transcriptional regulator protein, MarR family
2598	 58.82	0	2652378..2652785	+	135	190892237	-	RHECIAT_CH0002649	-	putative NTP pyrophosphohydrolase protein, MutT/nudix family
2599	 64.18	0	2652820..2653863	-	347	190892238	cyaCch	RHECIAT_CH0002650	-	adenylate cyclase protein
2600	 61.36	0	2653972..2654367	-	131	190892239	ohr	RHECIAT_CH0002651	-	organic hydroperoxide resistance protein
2601	 62.54	0	2654527..2655204	-	225	190892240	-	RHECIAT_CH0002652	-	hypothetical protein
2602	 58.05	-1	2655332..2655679	-	115	190892241	-	RHECIAT_CH0002653	-	hypothetical protein
2603	 65.46	+1	2655806..2657134	-	442	190892242	-	RHECIAT_CH0002654	-	hypothetical protein
2604	 64.94	0	2657286..2658908	-	540	190892243	mcpV	RHECIAT_CH0002655	-	methyl-accepting chemotaxis protein
2605	 65.10	0	2659376..2659759	+	127	190892244	-	RHECIAT_CH0002656	-	probable acyl-CoA hydrolase protein
2606	 59.18	0	2659785..2660372	+	195	190892245	-	RHECIAT_CH0002657	-	hypothetical protein
2607	 65.98	+1	2660717..2661889	-	390	190892246	-	RHECIAT_CH0002658	-	hypothetical protein
2608	 66.40	+1	2662016..2663527	-	503	190892247	-	RHECIAT_CH0002659	-	hypothetical protein
2609	 56.61	-1	2663649..2663996	-	115	190892248	-	RHECIAT_CH0002660	-	hypothetical protein
2610	 63.82	0	2664516..2665322	-	268	190892249	-	RHECIAT_CH0002661	-	probable SAM-dependent methyltransferase protein
2611	 65.42	+1	2665445..2666326	-	293	190892250	-	RHECIAT_CH0002662	-	hypothetical conserved membrane protein
2612	 65.68	+1	2666428..2667342	+	304	190892251	-	RHECIAT_CH0002663	-	probable transcriptional regulator protein, LysR family
2613	 59.61	0	2667468..2667722	-	84	190892252	-	RHECIAT_CH0002664	-	hypothetical protein
2614	 62.17	0	2667777..2668154	-	125	190892253	-	RHECIAT_CH0002665	-	putative two-component response regulator protein
2615	 61.48	0	2668338..2668703	-	121	190892254	-	RHECIAT_CH0002666	-	hypothetical protein
2616	 64.01	0	2668813..2669601	-	262	190892255	-	RHECIAT_CH0002667	-	hypothetical protein
2617	 65.11	0	2669810..2670646	+	278	190892256	-	RHECIAT_CH0002668	-	probable adenylate cyclase protein
61.82	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.