IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.82 STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2418	 62.77	0	2481056..2481337	-	93	190892057	-	RHECIAT_CH0002469	-	probable acylphosphatase protein
2419	 62.37	0	2481427..2481984	-	185	190892058	-	RHECIAT_CH0002470	-	hypothetical protein
2420	 63.23	0	2482000..2482698	-	232	190892059	rpiA	RHECIAT_CH0002471	-	ribose 5-phosphate isomerase protein
2421	 63.01	0	2482932..2483642	+	236	190892060	gph2	RHECIAT_CH0002472	-	phosphoglycolate phosphatase protein
2422	 62.06	0	2483967..2485877	-	636	190892061	-	RHECIAT_CH0002473	-	hypothetical protein
2423	 62.21	0	2486298..2487689	+	463	190892062	fumC	RHECIAT_CH0002474	-	fumarate hydratase protein, class II
2424	 52.26	-2	2487831..2488871	-	346	190892063	-	RHECIAT_CH0002475	-	putative exopolysaccharide production acyltransferase protein
2425	 54.23	-2	2489115..2489942	-	275	190892064	rapB2	RHECIAT_CH0002476	-	autoaggregation protein (adhering protein)
2426	 61.94	0	2490197..2491804	+	535	190892065	fumB	RHECIAT_CH0002477	-	fumarate hydratase protein, class I
2427	 57.22	-1	2491838..2492017	-	59	190892066	-	RHECIAT_CH0002478	-	hypothetical protein
2428	 60.58	0	2492362..2493429	+	355	190892067	-	RHECIAT_CH0002479	-	putative sensory box/GGDEF family protein
2429	 62.25	0	2493436..2494047	-	203	190892068	-	RHECIAT_CH0002480	-	putative pyridoxine biosynthesis protein
2430	 65.85	+1	2494084..2495064	-	326	190892069	-	RHECIAT_CH0002481	-	hypothetical protein
2431	 62.39	0	2495112..2495579	+	155	190892070	-	RHECIAT_CH0002482	-	probable transcriptional regulator protein, MarR family
2432	 62.64	0	2495583..2496773	-	396	190892071	-	RHECIAT_CH0002483	-	hypothetical conserved membrane protein
2433	 61.46	0	2496803..2497186	-	127	190892072	-	RHECIAT_CH0002484	-	hypothetical protein
2434	 61.99	0	2497360..2498406	+	348	190892073	moaA	RHECIAT_CH0002485	-	molybdenum cofactor biosynthesis protein
2435	 60.23	0	2498965..2499741	-	258	190892074	-	RHECIAT_CH0002486	-	probable ubiquinone/menaquinone biosynthesis methyltransferase protein
2436	 60.69	0	2499866..2501002	+	378	190892075	-	RHECIAT_CH0002487	-	putative iron ABC transporter, substrate-binding protein
2437	 64.52	0	2501009..2502079	+	356	190892076	-	RHECIAT_CH0002488	-	putative iron ABC transporter, permease protein
2438	 63.75	0	2502073..2502825	+	250	190892077	-	RHECIAT_CH0002489	-	putative iron ABC transporter, ATP-binding protein
2439	 62.25	0	2503141..2504091	-	316	190892078	-	RHECIAT_CH0002490	-	probable transcriptional regulator protein
2440	 62.78	0	2504113..2505579	-	488	190892079	glpKch1	RHECIAT_CH0002491	-	glycerol kinase protein
2441	 61.96	0	2505650..2506606	-	318	190892080	tktA	RHECIAT_CH0002492	-	transketolase protein, C-terminal subunit
2442	 58.82	0	2506606..2507319	-	237	190892081	tktB	RHECIAT_CH0002493	-	transketolase protein, N-terminal subunit
2443	 62.69	0	2507629..2508609	+	326	190892082	rbsCch2	RHECIAT_CH0002494	-	ribose ABC transporter, permease protein
2444	 60.22	0	2508726..2509655	+	309	190892083	rbsBch2	RHECIAT_CH0002495	-	ribose ABC transporter, substrate-binding protein
2445	 60.99	0	2509684..2511162	+	492	190892084	rbsAch2	RHECIAT_CH0002496	-	ribose ABC transporter, ATP-binding protein
2446	 60.96	0	2511185..2511973	+	262	190892085	-	RHECIAT_CH0002497	-	probable short chain dehydrogenase protein
2447	 62.45	0	2512211..2512993	+	260	190892086	-	RHECIAT_CH0002498	-	probable short chain dehydrogenase protein
2448	 64.06	0	2513019..2513786	-	255	190892087	-	RHECIAT_CH0002499	-	probable short chain dehydrogenase protein
2449	 56.55	-1	2513680..2513946	+	88	190892088	-	RHECIAT_CH0002500	-	hypothetical protein
2450	 63.34	0	2514138..2515010	+	290	190892089	-	RHECIAT_CH0002501	-	hypothetical conserved membrane protein
2451	 64.99	0	2515125..2515661	+	178	190892090	mobA	RHECIAT_CH0002502	-	molybdopterin-guanine dinucleotide biosynthesis protein
2452	 63.97	0	2515658..2516176	+	172	190892091	mobB	RHECIAT_CH0002503	-	molybdopterin-guanine dinucleotide biosynthesis protein
2453	 61.56	0	2516173..2518248	-	691	190892092	-	RHECIAT_CH0002504	-	putative two-component sensor histidine kinase protein
2454	 58.99	0	2518232..2519743	-	503	190892093	-	RHECIAT_CH0002505	-	probable protein kinase protein
2455	 61.41	0	2519861..2520754	-	297	190892094	-	RHECIAT_CH0002506	-	probable transcriptional regulator protein, LysR family
2456	 64.39	0	2520925..2521320	+	131	190892095	-	RHECIAT_CH0002507	-	hypothetical protein
2457	 61.62	0	2521333..2522322	+	329	190892096	-	RHECIAT_CH0002508	-	putative aldo-keto reductase protein
2458	 64.94	0	2522482..2523117	-	211	190892097	-	RHECIAT_CH0002509	-	putative maleylpyruvate isomerase protein
2459	 64.03	0	2523289..2523705	-	138	190892098	-	RHECIAT_CH0002510	-	probable stress-induced OsmC-like protein
2460	 63.79	0	2523895..2525217	-	440	190892099	-	RHECIAT_CH0002511	-	probable two-component sensor histidine kinase protein
2461	 63.29	0	2525214..2525954	-	246	190892100	-	RHECIAT_CH0002512	-	probable two-component response regulator protein
2462	 60.30	0	2526075..2527127	-	350	190892101	-	RHECIAT_CH0002513	-	probable epoxide hydrolase protein
2463	 64.24	0	2527313..2529250	+	645	190892102	-	RHECIAT_CH0002514	-	putative cytochrome c biogenesis protein
2464	 62.45	0	2529305..2530063	+	252	190892103	-	RHECIAT_CH0002515	-	putative hydrolase protein
2465	 65.74	+1	2530157..2532325	-	722	190892104	-	RHECIAT_CH0002516	-	putative outer membrane protein, OmpA family
2466	 58.27	-1	2532657..2533430	+	257	190892105	-	RHECIAT_CH0002517	-	probable amino acid ABC transporter, substrate-binding protein
2467	 60.22	0	2533544..2534350	+	268	190892106	-	RHECIAT_CH0002518	-	probable amino acid ABC transporter, permease protein
2468	 61.37	0	2534347..2535177	+	276	190892107	-	RHECIAT_CH0002519	-	probable amino acid ABC transporter, permease protein
2469	 59.18	0	2535341..2535607	+	88	190892108	-	RHECIAT_CH0002520	-	putative phosphoribosylanthranilate isomerase subunit Usg protein
2470	 60.58	0	2535608..2536330	-	240	190892109	-	RHECIAT_CH0002521	-	hypothetical conserved membrane protein
2471	 63.00	0	2536461..2537279	+	272	190892110	-	RHECIAT_CH0002522	-	putative methyltransferase protein
2472	 61.28	0	2537384..2538070	+	228	190892111	gstch9	RHECIAT_CH0002523	-	glutathione S-transferase protein
2473	 66.37	+1	2538067..2538408	+	113	190892112	-	RHECIAT_CH0002524	-	probable transcriptional regulator protein, ArsR family
2474	 61.22	0	2538405..2538881	+	158	190892113	-	RHECIAT_CH0002525	-	hypothetical protein
2475	 61.90	0	2538998..2539438	-	146	190892114	-	RHECIAT_CH0002526	-	hypothetical protein
2476	 63.68	0	2539485..2539952	-	155	190892115	-	RHECIAT_CH0002527	-	hypothetical protein
2477	 59.37	0	2540226..2540636	-	136	190892116	-	RHECIAT_CH0002528	-	hypothetical protein
2478	 61.73	0	2540633..2540956	-	107	190892117	-	RHECIAT_CH0002529	-	probable transcriptional regulator protein, ArsR family
2479	 66.67	+1	2541173..2541547	-	124	190892118	-	RHECIAT_CH0002530	-	hypothetical protein
2480	 62.18	0	2541708..2542577	+	289	190892119	-	RHECIAT_CH0002531	-	probable 3-hydroxyisobutyrate dehydrogenase protein
2481	 61.93	0	2542717..2543223	+	168	190892120	-	RHECIAT_CH0002532	-	hypothetical protein
2482	 57.52	-1	2543501..2543806	-	101	190892121	-	RHECIAT_CH0002533	-	hypothetical protein
2483	 57.31	-1	2543825..2544262	+	145	190892122	-	RHECIAT_CH0002534	-	putative inosine-5'-monophosphate dehydrogenase protein
2484	 57.82	-1	2544532..2544870	+	112	190892123	-	RHECIAT_CH0002535	-	hypothetical protein
2485	 61.25	0	2544864..2545214	-	116	190892124	-	RHECIAT_CH0002536	-	putative transcriptional regulator protein, LysR family
2486	 58.71	0	2545473..2546540	-	355	190892125	ropAch2	RHECIAT_CH0002537	-	porin outer membrane protein
2487	 50.60	-2	2546594..2546929	+	111	190892126	-	RHECIAT_CH0002538	-	hypothetical protein
2488	 56.03	-1	2547256..2547744	-	162	190892127	-	RHECIAT_CH0002539	-	probable transcriptional regulator protein, AsnC family
2489	 64.93	0	2547814..2548446	-	210	190892128	-	RHECIAT_CH0002540	-	probable uracil-DNA glycosylase protein
2490	 67.38	+1	2548451..2549008	-	185	190892129	-	RHECIAT_CH0002541	-	putative succinoglycan biosynthesis protein
2491	 61.65	0	2549115..2550650	+	511	190892130	-	RHECIAT_CH0002542	-	probable two-component sensor histidine kinase protein
2492	 57.81	-1	2550652..2551035	-	127	190892131	dgkA	RHECIAT_CH0002543	-	diacylglycerol kinase protein
2493	 67.16	+1	2551177..2552193	-	338	190892132	cobU	RHECIAT_CH0002544	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase protein
2494	 66.92	+1	2552367..2553149	+	260	190892133	cobV	RHECIAT_CH0002545	-	cobalamin (5'-phosphate) synthase protein
2495	 64.32	0	2553168..2553380	+	70	190892134	-	RHECIAT_CH0002546	-	hypothetical protein
2496	 62.68	0	2553380..2554081	+	233	190892135	-	RHECIAT_CH0002547	-	hypothetical protein
2497	 62.07	0	2554129..2555412	-	427	190892136	-	RHECIAT_CH0002548	-	putative multidrug resistance transporter protein
2498	 64.96	0	2555850..2556260	+	136	190892137	-	RHECIAT_CH0002549	-	hypothetical protein
2499	 54.55	-2	2556284..2556547	-	87	190892138	-	RHECIAT_CH0002550	-	hypothetical protein
2500	 63.02	0	2556787..2557719	+	310	190892139	-	RHECIAT_CH0002551	-	probable transcriptional regulator protein, LysR family
2501	 63.36	0	2557670..2558485	-	271	190892140	-	RHECIAT_CH0002552	-	probable short-chain dehydrogenase protein
2502	 58.14	-1	2558514..2559275	-	253	190892141	hndJ	RHECIAT_CH0002553	-	multidrug ABC transporter, permease protein
2503	 60.73	0	2559272..2560198	-	308	190892142	hndI	RHECIAT_CH0002554	-	multidrug ABC transporter, ATP-binding protein
2504	 58.96	0	2560499..2560978	-	159	190892143	-	RHECIAT_CH0002555	-	putative acetyltransferase protein
2505	 62.83	0	2561447..2563060	-	537	190892144	xynA	RHECIAT_CH0002556	-	beta-xylosidase protein
2506	 61.53	0	2563215..2564246	-	343	190892145	-	RHECIAT_CH0002557	-	probable oxidoreductase protein
2507	 63.76	0	2564478..2565611	-	377	190892146	-	RHECIAT_CH0002558	-	probable oxidoreductase protein
2508	 60.50	0	2565620..2566381	-	253	190892147	-	RHECIAT_CH0002559	-	putative xylose isomerase domain protein
2509	 60.53	0	2566420..2568879	-	819	190892148	manB2	RHECIAT_CH0002560	-	beta-mannosidase protein
2510	 60.89	0	2569160..2570266	-	368	190892149	-	RHECIAT_CH0002561	-	probable sugar ABC transporter, ATP-binding protein
2511	 58.45	0	2570271..2571098	-	275	190892150	-	RHECIAT_CH0002562	-	probable sugar ABC transporter, permease protein
2512	 57.62	-1	2571208..2572113	-	301	190892151	-	RHECIAT_CH0002563	-	probable sugar ABC transporter, permease protein
2513	 62.37	0	2572287..2573519	-	410	190892152	-	RHECIAT_CH0002564	-	probable sugar ABC transporter, substrate-binding protein
2514	 64.66	0	2573973..2575016	+	347	190892153	-	RHECIAT_CH0002565	-	probable transcriptional regulator protein, LacI family
2515	 63.58	0	2575367..2575981	+	204	190892154	-	RHECIAT_CH0002566	-	hypothetical protein
2516	 65.37	+1	2576016..2577092	+	358	190892155	ddlA	RHECIAT_CH0002567	-	D-alanine-D-alanine ligase protein
2517	 65.70	+1	2577129..2577746	-	205	190892156	-	RHECIAT_CH0002568	-	hypothetical protein
61.82	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.