IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.82 STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1199	 63.61	0	1216003..1216623	-	206	190890838	betI	RHECIAT_CH0001221	-	transcriptional regulator protein, TetR family
1200	 61.93	0	1216781..1217329	+	182	190890839	-	RHECIAT_CH0001222	-	hypothetical protein
1201	 66.26	+1	1217510..1217752	+	80	190890840	-	RHECIAT_CH0001223	-	hypothetical protein
1202	 60.59	0	1217804..1219729	+	641	190890841	-	RHECIAT_CH0001224	-	putative sensory box/GGDEF family protein
1203	 64.86	0	1219807..1220802	+	331	190890842	-	RHECIAT_CH0001225	-	probable quinone oxidoreductase protein
1204	 61.28	0	1220963..1221742	+	259	190890843	-	RHECIAT_CH0001226	-	putative methyltransferase protein
1205	 67.41	+1	1221791..1223131	-	446	190890844	-	RHECIAT_CH0001227	-	putative transporter protein
1206	 68.59	+1	1223321..1223944	+	207	190890845	-	RHECIAT_CH0001228	-	putative transcriptional regulator protein
1207	 65.02	0	1224230..1225441	-	403	190890846	-	RHECIAT_CH0001229	-	putative transporter, permease protein
1208	 65.77	+1	1225931..1226938	+	335	190890847	ansAch	RHECIAT_CH0001230	-	L-asparaginase II protein
1209	 66.93	+1	1226939..1227697	-	252	190890848	-	RHECIAT_CH0001231	-	probable transcriptional regulator protein, DeoR family
1210	 66.95	+1	1227836..1228192	+	118	190890849	-	RHECIAT_CH0001232	-	hypothetical protein
1211	 65.54	+1	1228442..1229062	+	206	190890850	gstch4	RHECIAT_CH0001233	-	glutathione S-transferase protein
1212	 64.22	0	1229108..1229515	-	135	190890851	-	RHECIAT_CH0001234	-	putative plasmid stabilization protein
1213	 65.10	0	1229515..1229769	-	84	190890852	-	RHECIAT_CH0001235	-	hypothetical protein
1214	 60.74	0	1229873..1230850	-	325	190890853	-	RHECIAT_CH0001236	-	hypothetical protein
1215	 57.95	-1	1230995..1231189	-	64	190890854	-	RHECIAT_CH0001237	-	hypothetical protein
1216	 65.22	0	1231324..1232220	+	298	190890855	-	RHECIAT_CH0001238	-	probable transcriptional regulator protein, LysR family
1217	 65.47	+1	1232327..1232992	-	221	190890856	gstch5	RHECIAT_CH0001239	-	glutathione S-transferase protein
1218	 56.75	-1	1232992..1233243	-	83	190890857	-	RHECIAT_CH0001240	-	hypothetical protein
1219	 57.92	-1	1233223..1233462	+	79	190890858	-	RHECIAT_CH0001241	-	hypothetical protein
1220	 62.80	0	1233481..1233945	+	154	190890859	-	RHECIAT_CH0001242	-	putative phosphatidylethanolamine-binding protein
1221	 65.66	+1	1234016..1235401	-	461	190890860	-	RHECIAT_CH0001243	-	hypothetical protein
1222	 64.92	0	1235615..1237909	+	764	190890861	-	RHECIAT_CH0001244	-	putative sensory box/GGDEF family protein
1223	 54.91	-1	1237922..1238644	-	240	190890862	-	RHECIAT_CH0001245	-	probable transcriptional regulator protein, LuxR family
1224	 60.25	0	1239106..1240896	+	596	190890863	mcpY	RHECIAT_CH0001246	-	methyl-accepting chemotaxis protein
1225	 63.17	0	1240915..1241886	-	323	190890864	-	RHECIAT_CH0001247	-	putative glycerophosphoryl diester phosphodiesterase protein
1226	 64.44	0	1242001..1242807	+	268	190890865	-	RHECIAT_CH0001248	-	putative peroxidase protein
1227	 65.08	0	1242854..1243864	+	336	190890866	-	RHECIAT_CH0001249	-	putative exonuclease protein involved in mRNA processing
1228	 65.01	0	1244129..1245754	+	541	190890867	-	RHECIAT_CH0001250	-	probable DNA ligase (ATP) protein
1229	 63.80	0	1245856..1246797	+	313	190890868	-	RHECIAT_CH0001251	-	putative aminopeptidase protein
1230	 60.00	0	1246846..1247070	+	74	190890869	-	RHECIAT_CH0001252	-	hypothetical protein
1231	 56.65	-1	1247125..1247823	+	232	190890870	-	RHECIAT_CH0001253	-	hypothetical protein
1232	 65.55	+1	1247922..1248728	+	268	190890871	-	RHECIAT_CH0001254	-	hypothetical protein
1233	 64.76	0	1248870..1249604	+	244	190890872	-	RHECIAT_CH0001255	-	hypothetical protein
1234	 57.62	-1	1249850..1250059	+	69	190890873	cspA2	RHECIAT_CH0001256	-	cold shock protein
1235	 59.93	0	1250232..1250513	+	93	190890874	-	RHECIAT_CH0001257	-	putative cold shock protein
1236	 60.34	0	1250567..1250803	+	78	190890875	rpsU1	RHECIAT_CH0001258	-	30S ribosomal protein S21
1237	 69.66	+2	1250885..1251118	+	77	190890876	-	RHECIAT_CH0001259	-	hypothetical protein
1238	 63.39	0	1251213..1251701	-	162	190890877	-	RHECIAT_CH0001260	-	probable transcriptional regulator protein, MarR family
1239	 64.54	0	1251937..1252359	+	140	190890878	-	RHECIAT_CH0001261	-	probable organic hydroperoxide resistance (osmotically inducible) protein
1240	 67.24	+1	1252596..1253114	-	172	190890879	-	RHECIAT_CH0001262	-	probable transcriptional regulator protein, MarR family
1241	 60.06	0	1253201..1253926	+	241	190890880	-	RHECIAT_CH0001263	-	hypothetical protein
1242	 61.32	0	1254018..1254485	+	155	190890881	-	RHECIAT_CH0001264	-	hypothetical protein
1243	 63.08	0	1254532..1255311	+	259	190890882	-	RHECIAT_CH0001265	-	putative glyoxalase protein
1244	 65.29	0	1255329..1256849	-	506	190890883	-	RHECIAT_CH0001266	-	probable ABC transporter, ATP-binding protein
1245	 67.29	+1	1257537..1259132	-	531	190890884	-	RHECIAT_CH0001267	-	probable ABC transporter, ATP-binding protein
1246	 57.75	-1	1259435..1259647	-	70	190890885	-	RHECIAT_CH0001268	-	hypothetical protein
1247	 64.81	0	1259724..1261286	-	520	190890886	-	RHECIAT_CH0001269	-	putative ATP-binding protein
1248	 66.67	+1	1261496..1261876	+	126	190890887	-	RHECIAT_CH0001270	-	hypothetical protein
1249	 63.60	0	1261990..1262445	+	151	190890888	-	RHECIAT_CH0001271	-	putative hydrolase protein
1250	 71.11	+2	1262577..1262891	+	104	190890889	-	RHECIAT_CH0001272	-	hypothetical protein
1251	 62.71	0	1262904..1264421	-	505	190890890	zwf2	RHECIAT_CH0001273	-	glucose-6-phosphate 1-dehydrogenase protein
1252	 63.42	0	1264772..1265542	-	256	190890891	tam	RHECIAT_CH0001274	-	trans-aconitate 2-methyltransferase protein
1253	 60.63	0	1265630..1266904	-	424	190890892	tlyC	RHECIAT_CH0001275	-	hemolysin protein
1254	 57.86	-1	1266912..1267331	-	139	190890893	-	RHECIAT_CH0001276	-	hypothetical protein
1255	 63.85	0	1267300..1267761	-	153	190890894	-	RHECIAT_CH0001277	-	hypothetical protein
1256	 64.43	0	1267836..1268462	-	208	190890895	-	RHECIAT_CH0001278	-	putative isochorismatase hydrolase protein
1257	 66.21	+1	1268540..1269424	+	294	190890896	-	RHECIAT_CH0001279	-	putative transcriptional regulator protein, LysR family
1258	 65.61	+1	1269598..1270638	-	346	190890897	-	RHECIAT_CH0001280	-	probable alcohol dehydrogenase protein
1259	 65.99	+1	1270889..1271776	+	295	190890898	ilvE1	RHECIAT_CH0001281	-	branched-chain amino acid aminotransferase protein
1260	 51.71	-2	1272000..1272554	-	184	190890899	-	RHECIAT_CH0001282	-	hypothetical protein
1261	 60.56	0	1272698..1273597	-	299	190890900	-	RHECIAT_CH0001283	-	probable transcriptional regulator protein, LysR family
1262	 64.98	0	1273735..1274976	+	413	190890901	-	RHECIAT_CH0001284	-	probable protein secretion protein, HlyD family
1263	 61.54	0	1275048..1276667	+	539	190890902	-	RHECIAT_CH0001285	-	probable multidrug resistance efflux system protein
1264	 65.74	+1	1276694..1277884	+	396	190890903	-	RHECIAT_CH0001286	-	probable adenylate cyclase protein
1265	 64.99	0	1278048..1278881	+	277	190890904	-	RHECIAT_CH0001287	-	probable NH(3)-dependent NAD(+)synthetase protein
1266	 63.99	0	1278891..1279562	-	223	190890905	-	RHECIAT_CH0001288	-	probable glutathione S-transferase protein
1267	 66.99	+1	1279690..1280307	+	205	190890906	-	RHECIAT_CH0001289	-	probable transcriptional regulator protein, TetR family
1268	 65.96	+1	1280269..1281543	-	424	190890907	-	RHECIAT_CH0001290	-	probable multi-drug resistance efflux system protein
1269	 59.06	0	1281657..1281998	+	113	190890908	-	RHECIAT_CH0001291	-	hypothetical protein
1270	 63.11	0	1281999..1282730	-	243	190890909	-	RHECIAT_CH0001292	-	hypothetical conserved membrane protein
1271	 64.98	0	1282790..1283443	-	217	190890910	-	RHECIAT_CH0001293	-	putative phosphatidylethanolamine N-methyltransferase protein
1272	 60.88	0	1283606..1284106	-	166	190890911	-	RHECIAT_CH0001294	-	hypothetical protein
1273	 58.71	0	1284146..1284748	+	200	190890912	sodB	RHECIAT_CH0001295	-	superoxide dismutase protein
1274	 62.41	0	1284884..1285729	+	281	190890913	-	RHECIAT_CH0001296	-	probable phosphatase protein
1275	 66.38	+1	1286115..1286807	-	230	190890914	-	RHECIAT_CH0001297	-	putative transcriptional regulator protein
1276	 63.68	0	1286938..1287573	+	211	190890915	-	RHECIAT_CH0001298	-	putative amino acid efflux protein, LysE family
1277	 62.79	0	1287690..1288592	-	300	190890916	-	RHECIAT_CH0001299	-	putative beta-lactamase family protein
1278	 63.38	0	1288717..1289325	-	202	190890917	-	RHECIAT_CH0001300	-	putative NAD-dependent epimerase/dehydratase protein
1279	 62.33	0	1289354..1290022	-	222	190890918	-	RHECIAT_CH0001301	-	putative DSBA-like thioredoxin protein
1280	 60.66	0	1290119..1291000	+	293	190890919	-	RHECIAT_CH0001302	-	putative transcriptional regulator protein, LysR family
1281	 62.61	0	1291197..1291640	+	147	190890920	cycF	RHECIAT_CH0001303	-	cytochrome C556 signal peptide protein
1282	 64.59	0	1291755..1292669	+	304	190890921	cycG	RHECIAT_CH0001304	-	diheme cytochrome c signal peptide protein
1283	 66.14	+1	1292680..1293252	-	190	190890922	-	RHECIAT_CH0001305	-	putative acetyltransferase protein
1284	 62.27	0	1293453..1293725	+	90	190890923	-	RHECIAT_CH0001306	-	hypothetical protein
1285	 63.48	0	1293744..1294748	+	334	190890924	-	RHECIAT_CH0001307	-	probable cation efflux system protein
1286	 65.54	+1	1294899..1295789	+	296	190890925	bla	RHECIAT_CH0001308	-	beta-lactamase protein
1287	 65.04	0	1296020..1298359	-	779	190890926	gcd	RHECIAT_CH0001309	-	glucose dehydrogenase (pyrroloquinoline-quinone) protein
1288	 65.67	+1	1298535..1300037	-	500	190890927	-	RHECIAT_CH0001310	-	hypothetical protein
1289	 62.84	0	1300341..1301726	+	461	190890928	-	RHECIAT_CH0001311	-	probable efflux transporter protein
1290	 61.66	0	1301808..1302326	-	172	190890929	-	RHECIAT_CH0001312	-	hypothetical protein
1291	 62.97	0	1302376..1304484	-	702	190890930	ptrB	RHECIAT_CH0001313	-	protease II protein
1292	 58.97	0	1304726..1305115	+	129	190890931	-	RHECIAT_CH0001314	-	hypothetical protein
1293	 65.01	0	1305208..1305993	+	261	190890932	-	RHECIAT_CH0001315	-	putative polysaccharide deacetylase protein
1294	 66.36	+1	1306035..1307327	-	430	190890933	-	RHECIAT_CH0001316	-	putative sarcosine oxidase protein
1295	 60.38	0	1307347..1308396	-	349	190890934	-	RHECIAT_CH0001317	-	putative transmembrane permease protein
1296	 64.32	0	1308738..1309121	+	127	190890935	-	RHECIAT_CH0001318	-	hypothetical protein
1297	 63.42	0	1309129..1310082	-	317	190890936	-	RHECIAT_CH0001319	-	putative glyoxylase protein
1298	 64.29	0	1310310..1310729	+	139	190890937	-	RHECIAT_CH0001320	-	probable universal stress protein
61.82	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.