IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.82   STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1108	 60.83	0	1141282..1141521	+	79	190890747	-	RHECIAT_CH0001129	-	hypothetical protein
1109	 63.68	0	1141548..1141781	-	77	190890748	-	RHECIAT_CH0001130	-	hypothetical protein
1110	 65.91	+1	1141787..1142050	-	87	190890749	-	RHECIAT_CH0001131	-	hypothetical protein
1111	 63.82	0	1142348..1142698	+	116	190890750	-	RHECIAT_CH0001132	-	hypothetical protein
1112	 63.89	0	1142855..1143502	-	215	190890751	-	RHECIAT_CH0001133	-	hypothetical protein
1113	 65.38	+1	1143586..1143819	+	77	190890752	-	RHECIAT_CH0001134	-	hypothetical protein
1114	 68.91	+2	1143958..1144314	+	118	190890753	-	RHECIAT_CH0001135	-	hypothetical protein
1115	 60.16	0	1144340..1144708	+	122	190890754	-	RHECIAT_CH0001136	-	hypothetical protein
1116	 66.95	+1	1144716..1145072	+	118	190890755	-	RHECIAT_CH0001137	-	hypothetical protein
1117	 66.16	+1	1145569..1146162	+	197	190890756	-	RHECIAT_CH0001139	-	hypothetical protein
1118	 62.77	0	1146380..1146841	+	153	190890757	-	RHECIAT_CH0001140	-	hypothetical conserved membrane protein
1119	 56.01	-1	1147067..1147507	-	146	190890758	-	RHECIAT_CH0001141	-	hypothetical protein
1120	 60.03	0	1147511..1148956	-	481	190890759	-	RHECIAT_CH0001142	-	hypothetical protein
1121	 64.10	0	1148982..1153028	-	1348	190890760	-	RHECIAT_CH0001143	-	hypothetical protein
1122	 62.67	0	1153484..1153984	+	166	190890761	-	RHECIAT_CH0001144	-	putative glutathione-dependent formaldehyde-activating protein
1123	 61.95	0	1154165..1156009	+	614	190890762	-	RHECIAT_CH0001145	-	probable Di- and tricarboxylate transporter protein
1124	 66.47	+1	1156090..1157619	-	509	190890763	-	RHECIAT_CH0001146	-	probable sulfate ABC transporter, permease protein
1125	 62.84	0	1157624..1158328	-	234	190890764	-	RHECIAT_CH0001147	-	probable carbonic anhydrase protein
1126	 65.71	+1	1158659..1159285	-	208	190890765	-	RHECIAT_CH0001148	-	putative SAM-dependent methyltransferase protein
1127	 57.96	-1	1159542..1160483	+	313	190890766	-	RHECIAT_CH0001149	-	hypothetical protein
1128	 55.39	-1	1160634..1160837	+	67	190890767	-	RHECIAT_CH0001150	-	hypothetical protein
1129	 60.94	0	1161150..1161341	+	63	190890768	-	RHECIAT_CH0001151	-	hypothetical protein
1130	 60.50	0	1161913..1163145	-	410	190890769	-	RHECIAT_CH0001152	-	putative beta-lactamase protein
1131	 62.24	0	1163442..1163960	-	172	190890770	-	RHECIAT_CH0001153	-	putative transporter, permease protein
1132	 58.80	0	1163991..1164206	-	71	190890771	-	RHECIAT_CH0001154	-	hypothetical protein
1133	 60.69	0	1164211..1164963	-	250	190890772	-	RHECIAT_CH0001155	-	hypothetical protein
1134	 55.45	-1	1165284..1165604	-	106	190890773	-	RHECIAT_CH0001156	-	hypothetical protein
1135	 55.21	-1	1165691..1165882	+	63	190890774	-	RHECIAT_CH0001157	-	hypothetical protein
1136	 62.58	0	1165942..1166994	+	350	190890775	-	RHECIAT_CH0001158	-	probable ATP-dependent DNA ligase protein
1137	 48.18	-2	1167007..1167309	-	100	190890776	-	RHECIAT_CH0001159	-	putative transmembrane protein
1138	 60.14	0	1167309..1167599	-	96	190890777	-	RHECIAT_CH0001160	-	hypothetical protein
1139	 61.11	0	1167623..1167964	-	113	190890778	-	RHECIAT_CH0001161	-	hypothetical protein
1140	 61.95	0	1168211..1169419	-	402	190890779	-	RHECIAT_CH0001162	-	probable transporter, permease protein
1141	 60.96	0	1169479..1170459	-	326	190890780	-	RHECIAT_CH0001163	-	probable transcriptional regulator protein, AraC family
1142	 60.08	0	1170640..1171170	+	176	190890781	-	RHECIAT_CH0001164	-	hypothetical protein
1143	 62.12	0	1171523..1172050	+	175	190890782	-	RHECIAT_CH0001165	-	putative cytochrome c protein
1144	 62.60	0	1172125..1173279	-	384	190890783	-	RHECIAT_CH0001166	-	putative polyhydroxybutyrate depolymerase protein
1145	 61.81	0	1173597..1173884	-	95	190890784	-	RHECIAT_CH0001167	-	hypothetical protein
1146	 61.80	0	1173948..1174214	+	88	190890785	-	RHECIAT_CH0001168	-	hypothetical protein
1147	 60.20	0	1174233..1174835	-	200	190890786	-	RHECIAT_CH0001169	-	hypothetical protein
1148	 62.99	0	1175035..1175442	+	135	190890787	-	RHECIAT_CH0001170	-	hypothetical protein
1149	 57.31	-1	1175693..1176034	+	113	190890788	-	RHECIAT_CH0001171	-	hypothetical conserved membrane protein
1150	 56.52	-1	1176255..1176530	-	91	190890789	-	RHECIAT_CH0001172	-	hypothetical protein
1151	 56.11	-1	1176554..1177993	+	479	190890790	-	RHECIAT_CH0001173	-	hypothetical protein
1152	 64.06	0	1178110..1178454	-	114	190890791	-	RHECIAT_CH0001174	-	probable transcriptional regulator protein, ArsR family
1153	 67.60	+1	1178561..1179307	+	248	190890792	-	RHECIAT_CH0001175	-	probable 3-oxoacyl-[acyl-carrier protein] reductase protein
1154	 60.42	0	1179447..1180262	+	271	190890793	-	RHECIAT_CH0001176	-	hypothetical protein
1155	 47.78	-2	1180510..1181049	-	179	190890794	-	RHECIAT_CH0001177	-	hypothetical protein
1156	 60.87	0	1181158..1181502	+	114	190890795	-	RHECIAT_CH0001178	-	hypothetical protein
1157	 61.59	0	1181466..1182548	-	360	190890796	-	RHECIAT_CH0001179	-	hypothetical protein
1158	 61.54	0	1182609..1183505	+	298	190890797	-	RHECIAT_CH0001180	-	putative esterase protein
1159	 66.78	+1	1183581..1184495	+	304	190890798	aacC	RHECIAT_CH0001181	-	aminoglycoside N3'-acetyltransferase protein
1160	 67.78	+1	1184613..1184972	+	119	190890799	-	RHECIAT_CH0001182	-	hypothetical protein
1161	 70.08	+2	1185170..1185667	+	165	190890800	-	RHECIAT_CH0001183	-	hypothetical protein
1162	 60.82	0	1185753..1186607	-	284	190890801	-	RHECIAT_CH0001184	-	putative hydrolase protein
1163	 51.19	-2	1186864..1187787	+	307	190890802	-	RHECIAT_CH0001185	-	hypothetical protein
1164	 59.22	0	1187846..1188745	-	299	190890803	-	RHECIAT_CH0001186	-	putative acyltransferase protein
1165	 61.57	0	1188969..1189223	+	84	190890804	-	RHECIAT_CH0001187	-	hypothetical protein
1166	 66.45	+1	1189198..1189662	+	154	190890805	-	RHECIAT_CH0001188	-	putative phage-related lysozyme protein
1167	 65.84	+1	1189662..1190024	+	120	190890806	-	RHECIAT_CH0001189	-	hypothetical protein
1168	 65.57	+1	1190074..1190256	+	60	190890807	-	RHECIAT_CH0001190	-	hypothetical protein
1169	 62.60	0	1190256..1192097	+	613	190890808	-	RHECIAT_CH0001191	-	hypothetical protein
1170	 63.40	0	1192110..1192538	+	142	190890809	-	RHECIAT_CH0001192	-	hypothetical protein
1171	 58.60	0	1192731..1192916	+	61	190890810	-	RHECIAT_CH0001193	-	hypothetical protein
1172	 58.71	0	1193197..1193397	-	66	190890811	-	RHECIAT_CH0001194	-	hypothetical protein
1173	 60.26	0	1193570..1193803	-	77	190890812	-	RHECIAT_CH0001195	-	hypothetical protein
1174	 67.33	+1	1193847..1195352	-	501	190890813	degPch1	RHECIAT_CH0001196	-	serine protease Do protein
1175	 53.54	-2	1195391..1195588	+	65	190890814	-	RHECIAT_CH0001197	-	hypothetical protein
1176	 64.07	0	1195858..1196895	+	345	190890815	-	RHECIAT_CH0001198	-	probable transcriptional regulator protein, LacI family
1177	 64.71	0	1196998..1197918	+	306	190890816	-	RHECIAT_CH0001199	-	probable transcriptional regulator protein, LysR family
1178	 58.39	0	1197937..1198890	-	317	190890817	-	RHECIAT_CH0001200	-	hypothetical protein
1179	 64.06	0	1199218..1201515	-	765	190890818	mrcB	RHECIAT_CH0001201	-	penicillin binding protein B
1180	 59.66	0	1201620..1202261	-	213	190890819	-	RHECIAT_CH0001202	-	putative peroxiredoxin protein
1181	 56.43	-1	1202602..1202982	-	126	190890820	-	RHECIAT_CH0001203	-	hypothetical protein
1182	 60.87	0	1203168..1203512	-	114	190890821	-	RHECIAT_CH0001204	-	hypothetical protein
1183	 63.98	0	1203640..1203825	-	61	190890822	-	RHECIAT_CH0001205	-	putative 4-oxalocrotonate tautomerase protein
1184	 61.88	0	1203917..1204480	+	187	190890823	-	RHECIAT_CH0001206	-	hypothetical protein
1185	 58.58	0	1204618..1205223	-	201	190890824	-	RHECIAT_CH0001207	-	putative transcriptional regulator protein, TetR family
1186	 59.58	0	1205253..1206155	+	300	190890825	-	RHECIAT_CH0001208	-	hypothetical protein
1187	 55.43	-1	1206110..1206376	+	88	190890826	-	RHECIAT_CH0001209	-	hypothetical protein
1188	 56.50	-1	1206584..1206829	-	81	190890827	-	RHECIAT_CH0001210	-	hypothetical protein
1189	 66.67	+1	1206868..1208364	-	498	190890828	cysN	RHECIAT_CH0001211	-	sulfate adenylyltransferase protein, subunit 1 (cysteine biosynthesis protein)
1190	 62.26	0	1208366..1209319	-	317	190890829	cysD	RHECIAT_CH0001212	-	sulfate adenylyltransferase protein, subunit 2 (cysteine biosynthesis protein)
1191	 64.66	0	1209435..1210181	-	248	190890830	cysH	RHECIAT_CH0001213	-	phosphoadenosine-phosphosulfate reductase protein
1192	 62.42	0	1210600..1211046	+	148	190890831	-	RHECIAT_CH0001214	-	putative transcriptional regulator protein
1193	 63.31	0	1211149..1211535	+	128	190890832	-	RHECIAT_CH0001215	-	hypothetical protein
1194	 63.50	0	1211553..1212026	+	157	190890833	-	RHECIAT_CH0001216	-	hypothetical protein
1195	 55.92	-1	1212062..1212424	+	120	190890834	-	RHECIAT_CH0001217	-	hypothetical protein
1196	 52.67	-2	1212421..1212720	+	99	190890835	-	RHECIAT_CH0001218	-	putative plasmid stabilization protein
1197	 64.42	0	1212721..1214370	-	549	190890836	betA	RHECIAT_CH0001219	-	choline dehydrogenase (CHD) protein
1198	 64.89	0	1214538..1216001	-	487	190890837	betB	RHECIAT_CH0001220	-	betaine aldehyde dehydrogenase (BADH) protein
1199	 63.61	0	1216003..1216623	-	206	190890838	betI	RHECIAT_CH0001221	-	transcriptional regulator protein, TetR family
1200	 61.93	0	1216781..1217329	+	182	190890839	-	RHECIAT_CH0001222	-	hypothetical protein
1201	 66.26	+1	1217510..1217752	+	80	190890840	-	RHECIAT_CH0001223	-	hypothetical protein
1202	 60.59	0	1217804..1219729	+	641	190890841	-	RHECIAT_CH0001224	-	putative sensory box/GGDEF family protein
1203	 64.86	0	1219807..1220802	+	331	190890842	-	RHECIAT_CH0001225	-	probable quinone oxidoreductase protein
1204	 61.28	0	1220963..1221742	+	259	190890843	-	RHECIAT_CH0001226	-	putative methyltransferase protein
1205	 67.41	+1	1221791..1223131	-	446	190890844	-	RHECIAT_CH0001227	-	putative transporter protein
1206	 68.59	+1	1223321..1223944	+	207	190890845	-	RHECIAT_CH0001228	-	putative transcriptional regulator protein
1207	 65.02	0	1224230..1225441	-	403	190890846	-	RHECIAT_CH0001229	-	putative transporter, permease protein
61.82	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.